📣 Help Shape the Future of UKRI's Gateway to Research (GtR)

We're improving UKRI's Gateway to Research and are seeking your input! If you would be interested in being interviewed about the improvements we're making and to have your say about how we can make GtR more user-friendly, impactful, and effective for the Research and Innovation community, please email gateway@ukri.org.

Optimisation-centric Generalisations of Bayesian Inference

Lead Research Organisation: UNIVERSITY COLLEGE LONDON
Department Name: Statistical Science

Abstract

Large scale black box statistical models are ubiquitous in modern society; and aimed at providing a way to examine the behaviour of complex systems. For example, Improbable has helped design such models as part of the RAMP initiative to help the UK government predict the spread of the COVID-19 virus. In engineering, so-called 'digital twins' of real-world physical phenomena or assets are commonly used to conduct virtual stress tests and predict the behaviour of critical systems in the presence of exogenous shocks.

An important concern for these models is the nature of our uncertainty about their predictions and recommendations. Unlike for more traditional statistical analysis, the underlying models are often highly complex, not immediately interpretable, and often misspecified. As a consequence, standard Bayesian methods of uncertainty quantification derived under the assumptions of the traditional paradigm for statistical analysis are often inappropriate. More specifically, they often result in over-confidence and a lack of robustness.

To tackle this issue, generalised forms of Bayesian uncertainty quantification have recently been developed. Such methods can ensure robustness and reduce the computational burden relative to standard Bayesian methods. This makes them ideal for applications in simulation-based modelling scenarios---such as COVID-19 modelling or digital twins. Yet, to date they have not been used in this context and primarily enjoyed success in time-ordered problems (such as on-line learning, changepoint detection, or filtering and smoothing) as well as in Bayesian Deep Learning applications (such as Bayesian neural networks or deep Gaussian Processes). In spite of their promise however, both their foundational theoretical properties as well as their computation are under-explored topics of research.

In this fellowship, I will advance the theory, methodology, and application of generalised Bayesian posteriors that are defined implicitly through an optimisation problem. While such generalised Bayesian methods have shown great promise, a thorough investigation of this kind will be required if they are to be adopted more widely. As part of this, I will investigate the fundamental question of how one should choose between different generalised posteriors. Complementing this, I will devise methodology for Bayesian computation geared towards the special properties of these posteriors. I will then leverage the advances made as part of this research to apply them on two classes of high-impact problems that traditional Bayesian methods struggle with: models revolving around intractable likelihoods, and simulator-based inference. For the applied component of this research programme, I will draw on the expertise of my project partners and use generalised posteriors for better uncertainty quantification in 'digital twins', as well as applications of importance for national security---such as modelling the COVID-19 pandemic.

Publications

10 25 50
 
Description Bayesian inference has been thoroughly modernised & advanced, and made fit for purpose for a range of machine learning applications
Exploitation Route Some outcomes of this grant are already powering production code of tech companies, e.g. Meta's Bayesian Optimisation team and MTU's quality control team which is involved with building jet engines. Our methods have also been used by Idoven (for cardiac healthcare) and Matterhorn Studios (for self-driving lab design).
There are also many other ways to apply this work.
Sectors Aerospace

Defence and Marine

Digital/Communication/Information Technologies (including Software)

Healthcare

 
Description This is already elaboraetd upon in key findings. Used in various companies' live production code.
Sector Aerospace, Defence and Marine,Digital/Communication/Information Technologies (including Software),Healthcare
 
Description 2017 Enrichment Scheme
Amount £1 (GBP)
Funding ID TU/D/000009 
Organisation Alan Turing Institute 
Sector Academic/University
Country United Kingdom
Start 09/2017 
End 09/2018
 
Description Bloomberg PhD Fellowship
Amount $150,000 (USD)
Organisation Bloomberg 
Sector Private
Country United States
Start 09/2024 
End 10/2025
 
Title Generalised Bayesian Inference for Discrete Intractable Likelihood 
Description Discrete state spaces represent a major computational challenge to statistical inference, since the computation of normalisation constants requires summation over large or possibly infinite sets, which can be impractical. This paper addresses this computational challenge through the development of a novel generalised Bayesian inference procedure suitable for discrete intractable likelihood. Inspired by recent methodological advances for continuous data, the main idea is to update beliefs about model parameters using a discrete Fisher divergence, in lieu of the problematic intractable likelihood. The result is a generalised posterior that can be sampled from using standard computational tools, such as Markov chain Monte Carlo, circumventing the intractable normalising constant. The statistical properties of the generalised posterior are analysed, with sufficient conditions for posterior consistency and asymptotic normality established. In addition, a novel and general approach to calibration of generalised posteriors is proposed. Applications are presented on lattice models for discrete spatial data and on multivariate models for count data, where in each case the methodology facilitates generalised Bayesian inference at low computational cost. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
URL https://tandf.figshare.com/articles/dataset/Generalised_Bayesian_Inference_for_Discrete_Intractable_...
 
Title Generalised Bayesian Inference for Discrete Intractable Likelihood 
Description Discrete state spaces represent a major computational challenge to statistical inference, since the computation of normalisation constants requires summation over large or possibly infinite sets, which can be impractical. This paper addresses this computational challenge through the development of a novel generalised Bayesian inference procedure suitable for discrete intractable likelihood. Inspired by recent methodological advances for continuous data, the main idea is to update beliefs about model parameters using a discrete Fisher divergence, in lieu of the problematic intractable likelihood. The result is a generalised posterior that can be sampled from using standard computational tools, such as Markov chain Monte Carlo, circumventing the intractable normalising constant. The statistical properties of the generalised posterior are analysed, with sufficient conditions for posterior consistency and asymptotic normality established. In addition, a novel and general approach to calibration of generalised posteriors is proposed. Applications are presented on lattice models for discrete spatial data and on multivariate models for count data, where in each case the methodology facilitates generalised Bayesian inference at low computational cost. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
URL https://tandf.figshare.com/articles/dataset/Generalised_Bayesian_Inference_for_Discrete_Intractable_...
 
Description Chris Oates / Takuo Matsuara 
Organisation Newcastle University
Country United Kingdom 
PI Contribution theory and development of methodology (focus on generalised Bayes)
Collaborator Contribution theory and development of methodology (focus on kernel methods)
Impact JRSSB publication JASA publication
Start Year 2021
 
Description David Dunson 
Organisation Duke University
Country United States 
Sector Academic/University 
PI Contribution expertise on generalised Bayes
Collaborator Contribution resources; expertise on statistical sciences
Impact Publication at the Journal of American Statistical Association in 2025 ('Robustifying likelihoods by optimistically re-weighting data')
Start Year 2023
 
Description David Frazier 
Organisation Monash University
Country Australia 
Sector Academic/University 
PI Contribution expertise in generalised Bayesian methodology
Collaborator Contribution expertise in Bayesian asymptotics
Impact Paper on asymptotics of generalised Bayesian methods with estimated losses
Start Year 2023
 
Description Dino Sejdinovic 
Organisation University of Adelaide
Country Australia 
Sector Academic/University 
PI Contribution expertise on generalised / post-Bayesian methodology
Collaborator Contribution PhD student (Veit Wild), resources (travel expenses paid), and expertise on kernel methods / functional analysis
Impact NeurIPS oral paper led by Veit Wild JMLR submission led by Veit Wild
Start Year 2023
 
Description Edwin Fong 
Organisation University of Hong Kong
Country Hong Kong 
Sector Academic/University 
PI Contribution Expertise in generalised Bayesian inference
Collaborator Contribution Expertise in nonparametric Bayesian statistics & Martingale posteriors
Impact Biometrika submission on the predictive influence of the so-called learning rate parameter
Start Year 2023
 
Description FX 
Organisation University College London
Country United Kingdom 
Sector Academic/University 
PI Contribution Expertise in generalised Bayesian methods
Collaborator Contribution Expertise on kernel methods and Gaussian process
Impact 6 papers to date
Start Year 2021
 
Description Creation of Post-Bayesian seminar series 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact fortnightly international remote seminar series on the advances in post-Bayesian analysis. High profile lectures by leaders in the field.(https://postbayes.github.io/seminar/)
Year(s) Of Engagement Activity 2025
URL https://postbayes.github.io/seminar/
 
Description Inaugural post-Bayesian workshop @ UCL 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact first workshop on post-Bayesian methods; 2-day event organised 15./16. of May 2025.
Year(s) Of Engagement Activity 2025
URL https://postbayes.github.io/workshop2025/
 
Description Workshop on robust Bayesian methods @ BayesComp Singapore 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact 2-day satellite workshop on robust Bayesian methods at BayesComp, the biannual meeting of the Section on Bayesian Computation of the International Soceity of Bayesian analysis
Year(s) Of Engagement Activity 2025