Bridging the gap between theory and experiment in paramagnetic NMR analysis
Lead Research Organisation:
University of Bath
Department Name: Chemistry
Abstract
The goal of the proposed research project is to innovate the paramagnetic NMR data analysis by integrating high-level quantum chemistry, improved models of pNMR shift and relaxation and machine learning. The proposed benchmark study would be able to define accuracy of different approaches tailored to range of systems. The employment of machine learning in this project would make a step forward to the automation of pNMR data analysis applied to wide variety of molecules.
In the modern world, the biggest challenges often appear in the smallest scale of a single molecule or even a single atom. Hence, obtaining information about systems on that scale becoming more and more important. There are number of analytical techniques, such as X-Ray diffraction, that allow us to get a glimpse of molecular structure but majority of them require samples in the solid state. Identification of molecular structure and its dynamic properties in solution is often done by Nuclear Magnetic Resonance (NMR) spectroscopy. Advances in NMR data analysis for simple diamagnetic organic molecules have reached a milestone of a complete automation several years ago, when major NMR software producers released their Computer-Assisted Structure Elucidation (CASE) products. Now, with a hit of a button a user can assign all the peaks in the NMR spectra and get a molecular structure of species in the sample.
When it comes to paramagnetic molecules or so-called pNMR, the contrast in analytic capabilities is striking. There are still debates in the scientific community on what equations describe pNMR peaks positions and linewidths. pNMR data analysis is currently at a similar stage as X-Ray diffraction crystallography in the beginning of XX century, when characterisation of one molecule could be published as a separate manuscript. Yet, paramagnetic molecules form an important class of compounds. In particular, paramagnetic metal complexes, which are employed as tags for protein structure and dynamics elucidation - information that forms the basis for modern drug design. They are also used as contrast agents or property responsive probes for magnetic resonance diagnostics.
In the modern world, the biggest challenges often appear in the smallest scale of a single molecule or even a single atom. Hence, obtaining information about systems on that scale becoming more and more important. There are number of analytical techniques, such as X-Ray diffraction, that allow us to get a glimpse of molecular structure but majority of them require samples in the solid state. Identification of molecular structure and its dynamic properties in solution is often done by Nuclear Magnetic Resonance (NMR) spectroscopy. Advances in NMR data analysis for simple diamagnetic organic molecules have reached a milestone of a complete automation several years ago, when major NMR software producers released their Computer-Assisted Structure Elucidation (CASE) products. Now, with a hit of a button a user can assign all the peaks in the NMR spectra and get a molecular structure of species in the sample.
When it comes to paramagnetic molecules or so-called pNMR, the contrast in analytic capabilities is striking. There are still debates in the scientific community on what equations describe pNMR peaks positions and linewidths. pNMR data analysis is currently at a similar stage as X-Ray diffraction crystallography in the beginning of XX century, when characterisation of one molecule could be published as a separate manuscript. Yet, paramagnetic molecules form an important class of compounds. In particular, paramagnetic metal complexes, which are employed as tags for protein structure and dynamics elucidation - information that forms the basis for modern drug design. They are also used as contrast agents or property responsive probes for magnetic resonance diagnostics.
Organisations
People |
ORCID iD |
| Elizaveta Suturina (Principal Investigator) |
Publications
Gigli L
(2024)
Machine Learning-Enhanced Quantum Chemistry-Assisted Refinement of the Active Site Structure of Metalloproteins
in Inorganic Chemistry
Lou D
(2024)
Self-Assembled Tetranuclear Square Complex of Chromium(III) Bridged by Radical Pyrazine: A Molecular Model for Metal-Organic Magnets.
in Journal of the American Chemical Society
| Description | In the past year we have successfully trained a PDRA who has created a new software tool for pNMR analysis available though the GitLab. We have also generated a good amount of benchmarking data for hyperfine coupling constants that will form the basis of upcoming research publication. We have started several collaborations and got access to experimental pNMR data for small metal complexes and metalloproteins in solution. |
| Exploitation Route | Making pNMR analysis as accessible as current NMR analysis of diamagnetic molecules would have a huge impact on the academic community and industrial researchers. The availability of NMR spectrometers and ease of acquiring pNMR spectra should be matched by the ease in data analy-sis. While the project is focused on fundamental research, if successful, it could contribute to the wide variety of fields including Healthcare (by improving design and characterisation of new MRI contrast agents, and better characterisation of metalloproteins), Materials (better understanding and design of new molecular magnetic materials) and other key sectors of RCUK investment. |
| Sectors | Chemicals Digital/Communication/Information Technologies (including Software) Pharmaceuticals and Medical Biotechnology |
| Description | This work is still ongoing there was only minor purely academic impact regarding the academic community perception of pNMR |
| First Year Of Impact | 2023 |
| Sector | Chemicals,Digital/Communication/Information Technologies (including Software),Pharmaceuticals and Medical Biotechnology |
| Impact Types | Cultural |
| Description | Springboard Programme for bilateral UK-France ECR partnership grants |
| Amount | £6,352 (GBP) |
| Organisation | British Council |
| Sector | Charity/Non Profit |
| Country | United Kingdom |
| Start | 03/2024 |
| End | 12/2024 |