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EPSRC Digital Health Hub for Antimicrobial Resistance

Lead Research Organisation: UNIVERSITY COLLEGE LONDON
Department Name: London Centre for Nanotechnology

Abstract

The Digital Health Hub for Antimicrobial Resistance (AMR) aims to harness innovative digital technologies to ultimately transform antimicrobial one-health surveillance and antimicrobial stewardship, recognising the interconnectedness of AMR between humans, animals and the environment.

The World Health Organization declared AMR - also known as the 'silent pandemic' - a top 10 global public health threat facing humanity. AMR also ranks on the UK Cabinet Office Risk Register and yet despite this recognition, there remains alarmingly low levels of attention and funding for AMR prevention. The 2016 O'Neill Review on Antimicrobial Resistance highlights that by 2050, 10 million lives a year and a cumulative US$100 trillion of economic output are at risk unless action is taken to reduce AMR. Resistant pathogens from animals, humans and food can be cross-transmitted and environmental reservoirs are a potentially important domain in which the mobilisation and transfer of resistant genes occur. Thus, an integrated One Health approach to AMR surveillance and public health action is needed. Moreover, there is growing concern that climate change could increase the risk of emerging and re-emerging infectious diseases.

There is growing recognition of the importance of data science and digital health technologies in the fight against AMR, though the field remains in its infancy. The COVID-19 pandemic has dramatically accelerated advances in digital health technologies, driven by unprecedented need, and there is a huge opportunity to leverage these advances for AMR. However, there remain many challenges: poor understanding of one-health needs; data linkage, silos and gaps hinder surveillance; the lack of rapid tests, the lack of public awareness of AMR; digital interventions often do not prioritise user-led design and are not grounded in behaviour change; data privacy, security and ethical issues of bringing together large datasets; health inequalities and the digital divide; the disconnect between early stage research and AMR needs, and lack of understanding of how digital technologies can be commercialised, regulated and integrated into health systems and patient pathways.

The Digital Health Hub for AMR brings together a critical mass of Co-Is working across traditional disciplines for AMR, including computer science, biomedical engineering, behavioural social science, environmental science, data visualisation, and clinical and public health research, from five universities, NHS, UK Health Security Agency, Centre for Ecology and Hydrology, charities and industry partners. Our hub vision will be achieved through five objectives:

1. Systems-level needs: To nurture a new culture of cross-sector engagement to accelerate the creation and adoption of digital health innovations for AMR one-health surveillance and antimicrobial stewardship.
2. Skills and Capacity: To grow interdisciplinary skills, capacity, knowledge sharing and leadership needed to deliver a world-leading digital health strategy for combatting AMR.
3. Grand Challenges: To co-create digital health solutions for two AMR grand challenges:
i) Digital one-health surveillance of antibiotic use and AMR, linking human, animal and environmental data
ii) Digital antimicrobial stewardship via decision support algorithms, digital diagnostics wearables and sensors
4. Partnership Fund: To grow critical mass and a hub of innovation by seeding interdisciplinary pilot studies between industry, academia, health and social care.
5. Impact and Engagement: To maximise hub impact and EPSRC's investment through our communications strategy, patient and public engagement, biannual conferences and events.
 
Title Artistic play -Andrew Singer 
Description A cutting-edge play about a brilliant scientist who creates an infectious vaccine that could save humanity from a future pandemic! 
Type Of Art Performance (Music, Dance, Drama, etc) 
Year Produced 2024 
Impact Helped audience understand the complexities of infections and antibiotics 
URL https://www.thecockpit.org.uk/show/panacea
 
Description EPSRC Digital Health Hub for AMR Digital Epidemiology Course-UKHSA
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
 
Description MedTech Device Innovation and Commercialisation for Digital Health and AMR
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
 
Description Training course on R for AMR for Epidemiologists
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
Impact UKHSA are clinicians use open-source methods of data analysis using R as a main tool in automated data processes, bespoke analysis, and in sharing our methods widely. Many university courses where our staff gain their training are based on traditional statistical packages that are both expensive and limited in ability to interact with our new data platforms: this course is a fantastic opportunity for them to learn new ways to transform, shape, and analyse our large-scale data with newer packages that are commonplace across the globe.
URL https://www.digitalamr.org/blog/ygv3kg8hw1kqsczmnbi9q09jsc2gxs
 
Description Centre for Doctoral Training in Real-Time Digital Water-Based Systems for Environmental Health Protection (RED-ALERT CDT)
Amount £892,104 (GBP)
Funding ID NE/Y006380/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 08/2024 
End 09/2030
 
Description EPSRC Centre for Doctoral Training iN digGital heAlth technoloGiEs (ENGAGE)
Amount £9,090,059 (GBP)
Funding ID EP/Y034929/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 03/2024 
End 09/2032
 
Description EPSRC and BBSRC Centre for Doctoral Training in Engineering Solutions for Antimicrobial Resistance
Amount £6,641,473 (GBP)
Funding ID EP/Y035658/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 05/2024 
End 09/2032
 
Description IET AF Harvey Engineering Research Prize 2023
Amount £350,000 (GBP)
Funding ID n/a 
Organisation Institution of Engineering and Technology 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2024 
End 12/2026
 
Description Inspiring Futures for Zero Carbon Mobility (INFUZE)
Amount £6,295,780 (GBP)
Funding ID EP/Z531273/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 06/2024 
End 07/2029
 
Description Plate reader for Lab at £40K
Amount £40,000 (GBP)
Organisation University College London 
Sector Academic/University
Country United Kingdom
Start 01/2024 
End 07/2024
 
Description Quantum Biomedical Sensing Research Hub (Q-BIOMED): Delivering the quantum enabled future of early disease diagnosis and treatment
Amount £20,961,490 (GBP)
Organisation United Kingdom Research and Innovation 
Sector Public
Country United Kingdom
Start 12/2024 
End 11/2029
 
Description Streamlining the development of lateral flow immunoassays to accelerate the path to market
Amount £42,725 (GBP)
Organisation University of Oxford 
Sector Academic/University
Country United Kingdom
Start 04/2024 
End 10/2025
 
Description UCL Computing Science Fellowship for Magnus Ross
Amount £23,604 (GBP)
Organisation University College London 
Sector Academic/University
Country United Kingdom
Start 02/2025 
End 07/2025
 
Description Arup 
Organisation Arup Group
Country United Kingdom 
Sector Private 
PI Contribution Engaged with Arup on wastewater via a stakeholder group
Collaborator Contribution Venue and hosting the event for stakeholder waste water event. Also, collaborate on papers
Impact Publications and dashboard
Start Year 2023
 
Description Collaboration between Bangor University and Arup to hold a Water Sector Workshop in AMR 
Organisation Arup Group
Country United Kingdom 
Sector Private 
PI Contribution We have actively contributed to the collaboration on the workshop through multiple meetings with the Arup to develop a proposal and curation of the workshop. We have provided expertise on the workshop's theme, agenda, and key objectives, including a review of the workshop poster designed by Arup. We have engaged with stakeholders from the water sector, including governmental and environmental agencies, representatives from the water industry, and research institutions, to raise awareness and promote the workshop. And as a result, we have compiled a list of invitees.
Collaborator Contribution Arup have contributed to the workshop by allocating the necessary budget, and being responsible for the design and curation of the workshop including the advert poster, and managing communication with the invited participants.
Impact The outcome of this collaboration is the successful organisation of a workshop, scheduled to take place on the 20th May 2025.
Start Year 2024
 
Description Edinburgh University 
Organisation University of Edinburgh
Country United Kingdom 
Sector Academic/University 
PI Contribution Edinburgh University - Andrew Singer is forming a new cross-sector collaboration with Professor David Gally (University of Edinburgh) together with John Redshaw (Scottish Environmental Protection Agency) Prof David Aanensen (University of Oxford), Jaime Martinez-Urtaza (Cefas), Gordon Shaw Blair (UKCEH), Alwyn Hart (Environment Agency). together with Hub members Andrew Singer (UK CEH) and James Hetherington (UCL), UK CEH and Edinburgh to develop machine learning-informed source/host apportionment pipeline for human pathogenic bacteria (e.g, E. coli). A Partnership project is awarded.
Collaborator Contribution Together with Hub members Andrew Singer (UK CEH) and James Hetherington (UCL), UK CEH and Edinburgh to develop machine learning-informed source/host apportionment pipeline for human pathogenic bacteria (e.g, E. coli). A Partnership project is awarded.
Impact The fund will feed into the Grand Challenge 1.1 on TRE and also a upcoming stakeholder event in Environment
Start Year 2024
 
Description Environment Agency 
Organisation Environment Agency
Country United Kingdom 
Sector Public 
PI Contribution Professor David Gally (University of Edinburgh) and John Redshaw (Scottish Environmental Protection Agency) Prof David Aanensen (University of Oxford), Jaime Martinez-Urtaza (Cefas), Gordon Shaw Blair (UKCEH), Alwyn Hart (Environment Agency). together with Hub members Andrew Singer (UK CEH) and James Hetherington (UCL)
Collaborator Contribution UK CEH and Edinburgh to develop machine learning-informed source/host apportionment pipeline for human pathogenic bacteria (e.g. E. coli) with Alywyn Hart at Environment Agency
Impact A Partnership Proposal was awarded for £37K at 80%.
Start Year 2024
 
Description Great Ormond Street Hospital 
Organisation Great Ormond Street Hospital (GOSH)
Country United Kingdom 
Sector Hospitals 
PI Contribution Great Ormond Street Hospital, Professor Nastouli is collaborating with GOSH to expand to another clinical site and ICH, III (M Bajaj and J Standing)
Collaborator Contribution Eleni will expand her research to this hospital which will widen the impact that was described in the research proposal.
Impact Larger datasets, more publications and also case studies
Start Year 2024
 
Description HSCNI 
Organisation Health and Social Care in Northern Ireland (HSCNI)
Country United Kingdom 
Sector Public 
PI Contribution Public Health Agency Northern Ireland - we are partnering with Magda Buholc lead epidemiologist at the Public Health Agency Northern Ireland on new training programmes.
Collaborator Contribution Magda also joined one of our Launch panel discussions and is inviting staff across the devolved nations to attend.
Impact Training course for Epidemiologists at HSCNI and future involvement on panels and workshops from their staff
Start Year 2024
 
Description Health Data Research UK 
Organisation Health Data Research UK
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution We partner with HDRUK on the Black Internship Programme by funding positions and identify projects at host organizations, facilitated by the AMR Hub.
Collaborator Contribution We partner with HDRUK on the Black Internship Programme by funding positions, identify projects at host organizations, and facilitated the interviewing and onboarding process.
Impact Internship posts in the Black Internship Programme. Future involvement on training oppotunities and workshops from HDRUK.
Start Year 2024
 
Description Imperial College 
Organisation Imperial College London
Country United Kingdom 
Sector Academic/University 
PI Contribution Imperial College - Dr Tim Rawson gave a lecture as part of our new Digital Health Hub skills programme. Prof Molly Stevens is collaborating with Prof. Ruth Misener (Imperial College, UK) to develop machine learning tools to predict lateral flow assay performance from data generated from high-throughput screening techniques.
Collaborator Contribution This collaboration has led to the successful funding of a £48K pump priming grant ('Improving Equitable Access to Healthcare').
Impact n/a yet
Start Year 2024
 
Description Major strategic collaboration between Bangor University and Verily on wastewater-based epidemiology 
Organisation Verily Life Sciences LLC
Country United States 
Sector Private 
PI Contribution Davey Jones' group at Bangor has agreed a major strategic collaboration with Verily to work on wastewater-based epidemiology. It is a commercial and R&D collaborative partnership. We will be processing samples for Verily as well as developing new research avenues. This relates to AMR as well as other pathogens and biomarkers in wastewater.
Collaborator Contribution Set up and installation of lab and lab equipment at Bangor University, and ongoing commercialisation and R&D.
Impact Ongoing commercialisation and R&D for wastewater-based epidemiology.
Start Year 2024
 
Description Roche 
Organisation Roche Pharmaceuticals
Country Global 
Sector Private 
PI Contribution Roche can apply for Fellowships and Partnership Funds
Collaborator Contribution Contribution of workshops and webinars which ECRs and PhDs can attend
Impact None yet
Start Year 2023
 
Title RDT Reader Mobile App 
Description Android app for reading rapid diagnostic tests using deep learning models. This app is still in development and its first version is expected to be released in autumn this year. 
Type Of Technology Webtool/Application 
Year Produced 2024 
Impact - The models deployed in the app help users to capture images of rapid diagnostic tests and classify them as positive/negative, reducing the probability of false positives and false negatives. Especially when the test lines are faint. - The app is able to run model inference on the device without requiring internet connection 
 
Description 4 Nations Workshop 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact 4 Nations Worksop (2 days) to discuss harmonisation of wastewater based epidemiology across the UK.
Year(s) Of Engagement Activity 2025
 
Description AMR & One Health: What aren't we doing, and where would we like to go next?-Colin Brown 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact Transatlantic Taskforce on Antimicrobial Resistance (TATFAR) Working Group, April 2024, Online
Year(s) Of Engagement Activity 2024
URL https://www.niaid.nih.gov/research/tatfar
 
Description Cardiff Science Society (invited talk) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact talk on wastewater based surviellance of AMR and other pathogens in hospitals and the wider community.
Year(s) Of Engagement Activity 2025
 
Description Careers event 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact Wales Ecology & Evolution Network (WEEN) 29th Nov -1st Dec. Early career researchers develop networks, learn from senior staff and new collaborations
Year(s) Of Engagement Activity 2024
URL https://ween.wales/event/ween/
 
Description Citizen Science Event: Conwy River Water Quality 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Citizen Science sampling event to monitor wastewater pollution in the River Conwy
Year(s) Of Engagement Activity 2025
 
Description Designing Innovative Materials for Enhanced Healing and Early Disease Detection (Vienna)-Molly Stevens 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact Landsteiner Lecture, Vienna Austria 11-14 May 2024
Year(s) Of Engagement Activity 2024
URL https://www.eu-life.eu/newsroom/events/17h-cemm-landsteiner-lecture
 
Description Designing bioinspired materials to heal the body and detect diseases earlier-Molly Stevens 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Other audiences
Results and Impact 12th World Biomaterials Congress (WBC), Daegu, South Korea, May 26-31, 2024
Year(s) Of Engagement Activity 2024
URL https://www.wbc2024.com/index.php?GP=information/overview
 
Description Development of pre-emptive data driven wastewater-based tools to predict the risk posed by norovirus and AMR-Davey Jones 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact London, March 19th, 2024
Year(s) Of Engagement Activity 2024
 
Description Diagnostics for LMIC 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Speakers from Africa CDC, Malawi Liverpool Wellcome Programme, and the Africa Health Research Institute, plus a joint session with Oxford International Pandemic Sciences Institute.UCL students from South Africa, Gambia, Malawi, Nigeria, Morocco, India, Indonesia, Argentina, Russia, Iran, Chile and Malaysia. UCL student attendee:

"Thanks to you for this wonderful opportunity. I thoroughly enjoyed every aspect of the conference. As a chemical engineer, it was enlightening to learn from different perspectives, which broadened my horizons."

Blog on Digital Health Hub website and Reuben College

UCL Provost sent video congratulating students and Digital Health Hub for AMR
Year(s) Of Engagement Activity 2024
URL https://www.digitalamr.org/blog/diagnostics-for-antimicrobial-resistance-in-low-and-middle-income-co...
 
Description EPSRC Digital Health Hub for AMR launch event -March 2024 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Cross sector attendees spanning Academica, NHS, UKHSA, DEFRA, Veterinary Medicines Directive, Environment Agency, devolved nations (Wales, Scotland, Northern Ireland) industry: Roche, ARUP, Faculty. Senior attendee and previous government Chief Scientist
"Fabulous content and audience networking Brilliant launch - many congratulations! I even woke up dreaming of AMR (positively) this morning. Great prospects for this AMR solutions agenda ahead of us now."

We are also including our stakeholder events as a form of training, through knowledge dissemination and discussions.
Year(s) Of Engagement Activity 2024
URL https://www.digitalamr.org/blog/roger-b28cc-ylfyj
 
Description Going viral: Harnessing Deep Learning and Quantum Materials for Early Disease Diagnosis (AMR hub presented)-Rachel McKendry 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact Cornforth Annual Prize Lecture, January 2024
Year(s) Of Engagement Activity 2024
URL https://www.sussex.ac.uk/broadcast/read/63140
 
Description Harnessing Digital and Quantum Technologies for Future Diagnostics -Rachel McKendry 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact Diagnostics for Low- and Middle-Income Countries Conference Reuben College Oxford, joint session with the Pandemic Sciences Institute. 2-3rd July 2024, Session on Diagnostics for AMR in Africa co-funded by the Digital Health Hub for AMR-Invited talk 2nd July 2024
Year(s) Of Engagement Activity 2024
URL https://www.digitalamr.org/blog/diagnostics-for-antimicrobial-resistance-in-low-and-middle-income-co...
 
Description Harnessing Quantum Technologies for Health: opportunities and challenges-Rachel McKendry 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact Invited talk 19th June 2024-National Physical Laboratory Quantum for Life Sciences; 19th June 2024
Year(s) Of Engagement Activity 2024
 
Description Hopital AMR wastewater meeting 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact Met with the North Wales sustainabilty team to discuss AMR in wastewater discharged from the hospital
Year(s) Of Engagement Activity 2025
 
Description International perspective - the UK experience with AMR-Colin Brown 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact How can Denmark help slow down the silent tsunami - antibiotic resistance? September 2024, Copenhagen
Year(s) Of Engagement Activity 2024
 
Description Launch of EPSRC Digital Health Hub for AMR-Rachel McKendry 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact The EPSRC AMR Hub was launched and industry and academics attended. There was also two panels of experts in AMR
Year(s) Of Engagement Activity 2023
URL https://www.digitalamr.org/blog/roger-b28cc-ylfyj
 
Description Meeting with BCUHB hospitals clinical infection teams in North Wales 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Meeting to discuss the use of wastewater data for AMR surveillance
Year(s) Of Engagement Activity 2025
 
Description Optimising antimicrobial stewardship education and training: a systematic review and strategic behavioural analysis-Fabiana Lorencatto 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact 3-6th Sept International European Health Psychology Society annual conference, Lisbon, Portugal.
Year(s) Of Engagement Activity 2024
URL https://2024.ehps.net/
 
Description Wastewater-based epidemiology COVID-19 and beyond-Davey Jones 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact Chinese Agricultural University, Beijing, 24th April 2024
Year(s) Of Engagement Activity 2024
URL https://chinascholarshipcouncil.com/china-agricultural-university/
 
Description Wastewater-based epidemiology-Davey Jones 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact 10-11th October, EU-WISH, Lisbon
Year(s) Of Engagement Activity 2024
URL https://www.eu-wish.eu/get-involved/events
 
Description What can urban wastewater tell us about human behaviour and health in Wales?-Molly Stevens 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact Wales Health Science Conference, Cardiff, 8th March, 2024
Year(s) Of Engagement Activity 2024
URL https://heiw.nhs.wales/files/wales-health-science-conference-2024-agenda/
 
Description Working across and beyond traditional scientific disciplines: the i-sense 10-year lecture (AMR hub presented)-Rachel McKendry 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact Sensors in Medicine Keynote lecture
Year(s) Of Engagement Activity 2024
URL https://medilinksouthwest.com/events/sensors-in-medicine-2024