Palmitoylation of Exocytic Proteins: Role in Membrane Compartmentalization, Intracellular Trafficking, and Function
Lead Research Organisation:
University of Strathclyde
Department Name: Inst of Pharmacy and Biomedical Sci
Abstract
Certain cells contain small sacs or ‘vesicles‘ filled with important cargo, such as hormones or neurotransmitters. Appropriate stimuli trigger the fusion of these vesicles with the cell membrane, resulting in cargo secretion from the cell. A large number of proteins are required for membrane fusion, and it is essential to determine how these various proteins are regulated. Interestingly, we have shown that the attachment of palmitate (a fatty acid) to certain proteins modifies their localisation in the cell membrane and regulates their ability to support membrane fusion. This proposal will precisely determine how palmitate addition regulates the activity of proteins that mediate membrane fusion, and identify whether dynamic addition/removal of palmitate is important for fusion activity. Furthermore, we will determine how palmitate regulates the sorting of proteins to specific locations in the cell. These analyses will provide valuable and novel information on the regulation of membrane fusion by palmitate, and will also serve as an important paradigm to understand how palmitate regulates the sorting and membrane distribution of proteins in general. The results generated from this study will hopefully contribute to the design of treatments for conditions such as epilepsy and other brain disorders, and metabolic disorders such as diabetes.
Technical Summary
The fusion of intracellular secretory vesicles with the plasma membrane (exocytosis) mediates cellular secretion of essential molecules such as neurotransmitters and hormones. Exocytosis in neuronal cells is dependent upon the interaction of the plasma membrane SNAREs, SNAP25 and syntaxin 1A, with the vesicle SNARE, VAMP2. Indeed, the formation of this ‘SNARE complex‘ may directly catalyze membrane fusion. A large number of other proteins function in exocytosis, including the chaperone cysteine-string protein (CSP). Despite a good understanding of the proteins and protein-protein interactions that mediate exocytosis, far less is known about how lipid modifications, such as protein palmitoylation, regulate this process.
We identified a relationship between the number of potential palmitoylation sites in SNAP25, or its ubiquitous homologue SNAP23, and the extent of exocytosis. These effects of palmitoylation on exocytosis may be mediated by compartmentalisation of SNAP25/23 into specific micro-domains of the plasma membrane. To extend upon these novel observations, we will utilise mass spectrometry to analyze the extent of SNAP25/23 palmitoylation, and whether differentially palmitoylated pools of these proteins are present in cells. Immunogold labelling will then be used to precisely map the micro-localisation of SNAP25/23 at the plasma membrane, and determine how this is modulated by palmitoylation. Furthermore, we will examine the activity-dependent regulation of SNAP25/23 palmitoylation, and of other cellular proteins, and determine the importance of this for exocytosis. Finally, total internal reflection microscopy and amperometry will be used to pinpoint the aspect(s) of exocytosis that is modulated by specific SNAP25/23 cysteine mutants or palmitoylating enzymes.
In addition to regulating micro-localization and function of SNAP25/23, we propose that palmitoylation also regulates the intracellular sorting of SNAP25 and CSP. Indeed, recent work has highlighted an important role for palmitoylation in the intracellular trafficking of certain proteins. However, little is known about how palmitoylated proteins that lack identifiable primary membrane targeting determinants, such as SNAP25 and CSP, are trafficked within the cell. To address this, we will use a combination of confocal imaging, fractionation and inhibitor studies to identify the intracellular trafficking pathways of SNAP25 and CSP, and determine how trafficking and correct sorting is regulated by palmitoylation. In addition, we will determine how palmitoylation code regulates correct intracellular sorting to specific pre/post-synaptic sites in neurons. Finally, the role of palmitoylation in regulating the exocytic function of CSP will be tested.
Overall, these analyses will provide novel data on the role of palmitoylation in regulating protein trafficking, micro-localization and function.
We identified a relationship between the number of potential palmitoylation sites in SNAP25, or its ubiquitous homologue SNAP23, and the extent of exocytosis. These effects of palmitoylation on exocytosis may be mediated by compartmentalisation of SNAP25/23 into specific micro-domains of the plasma membrane. To extend upon these novel observations, we will utilise mass spectrometry to analyze the extent of SNAP25/23 palmitoylation, and whether differentially palmitoylated pools of these proteins are present in cells. Immunogold labelling will then be used to precisely map the micro-localisation of SNAP25/23 at the plasma membrane, and determine how this is modulated by palmitoylation. Furthermore, we will examine the activity-dependent regulation of SNAP25/23 palmitoylation, and of other cellular proteins, and determine the importance of this for exocytosis. Finally, total internal reflection microscopy and amperometry will be used to pinpoint the aspect(s) of exocytosis that is modulated by specific SNAP25/23 cysteine mutants or palmitoylating enzymes.
In addition to regulating micro-localization and function of SNAP25/23, we propose that palmitoylation also regulates the intracellular sorting of SNAP25 and CSP. Indeed, recent work has highlighted an important role for palmitoylation in the intracellular trafficking of certain proteins. However, little is known about how palmitoylated proteins that lack identifiable primary membrane targeting determinants, such as SNAP25 and CSP, are trafficked within the cell. To address this, we will use a combination of confocal imaging, fractionation and inhibitor studies to identify the intracellular trafficking pathways of SNAP25 and CSP, and determine how trafficking and correct sorting is regulated by palmitoylation. In addition, we will determine how palmitoylation code regulates correct intracellular sorting to specific pre/post-synaptic sites in neurons. Finally, the role of palmitoylation in regulating the exocytic function of CSP will be tested.
Overall, these analyses will provide novel data on the role of palmitoylation in regulating protein trafficking, micro-localization and function.
Organisations
- University of Strathclyde, United Kingdom (Fellow, Lead Research Organisation)
- Washington University in St Louis, United States (Collaboration)
- University of Edinburgh, United Kingdom (Collaboration)
- University of Bristol, United Kingdom (Collaboration)
- University of British Columbia, Canada (Collaboration)
- University of Glasgow, United Kingdom (Collaboration)
- National Institute for Physiological Sciences (Collaboration)
- University of Dundee, United Kingdom (Collaboration)
- King's College London, United Kingdom (Collaboration)
People |
ORCID iD |
Luke Haydn Chamberlain (Principal Investigator / Fellow) |
Publications

Bournazos S
(2009)
Association of FcgammaRIIa (CD32a) with lipid rafts regulates ligand binding activity.
in Journal of immunology (Baltimore, Md. : 1950)

Chamberlain LH
(2013)
Palmitoylation and the trafficking of peripheral membrane proteins.
in Biochemical Society transactions

Gorleku OA
(2011)
Endoplasmic reticulum localization of DHHC palmitoyltransferases mediated by lysine-based sorting signals.
in The Journal of biological chemistry

Gorleku OA
(2010)
Palmitoylation and testis-enriched expression of the cysteine-string protein beta isoform.
in Biochemistry

Greaves J
(2010)
Regulation of SNAP-25 trafficking and function by palmitoylation.
in Biochemical Society transactions

Greaves J
(2010)
S-acylation by the DHHC protein family.
in Biochemical Society transactions

Greaves J
(2008)
Palmitoylation and membrane interactions of the neuroprotective chaperone cysteine-string protein.
in The Journal of biological chemistry

Greaves J
(2011)
Differential palmitoylation regulates intracellular patterning of SNAP25.
in Journal of cell science

Greaves J
(2010)
Palmitoylation of the SNAP25 protein family: specificity and regulation by DHHC palmitoyl transferases.
in The Journal of biological chemistry

Greaves J
(2007)
Palmitoylation-dependent protein sorting.
in The Journal of cell biology

Greaves J
(2009)
The fat controller: roles of palmitoylation in intracellular protein trafficking and targeting to membrane microdomains (Review).
in Molecular membrane biology

Greaves J
(2009)
The hydrophobic cysteine-rich domain of SNAP25 couples with downstream residues to mediate membrane interactions and recognition by DHHC palmitoyl transferases.
in Molecular biology of the cell

Greaves J
(2011)
The palmitoyl transferase DHHC2 targets a dynamic membrane cycling pathway: regulation by a C-terminal domain.
in Molecular biology of the cell

Greaves J
(2012)
Palmitoylation-induced aggregation of cysteine-string protein mutants that cause neuronal ceroid lipofuscinosis.
in The Journal of biological chemistry

Greaves J
(2011)
DHHC palmitoyl transferases: substrate interactions and (patho)physiology.
in Trends in biochemical sciences

Greenshields KN
(2009)
The neuropathic potential of anti-GM1 autoantibodies is regulated by the local glycolipid environment in mice.
in The Journal of clinical investigation

Kouskou M
(2018)
Disruption of the Zdhhc9 intellectual disability gene leads to behavioural abnormalities in a mouse model.
in Experimental neurology

Lemonidis K
(2014)
The Golgi S-acylation machinery comprises zDHHC enzymes with major differences in substrate affinity and S-acylation activity.
in Molecular biology of the cell

Lemonidis K
(2015)
Identification of a Novel Sequence Motif Recognized by the Ankyrin Repeat Domain of zDHHC17/13 S-Acyltransferases
in Journal of Biological Chemistry

Medine CN
(2007)
Munc18-1 prevents the formation of ectopic SNARE complexes in living cells.
in Journal of cell science

Prescott GR
(2011)
Regional and developmental brain expression patterns of SNAP25 splice variants.
in BMC neuroscience

Prescott GR
(2009)
Palmitoylation of the synaptic vesicle fusion machinery.
in Journal of neurochemistry

Rickman C
(2010)
t-SNARE protein conformations patterned by the lipid microenvironment.
in The Journal of biological chemistry

Salaun C
(2010)
The intracellular dynamic of protein palmitoylation.
in The Journal of cell biology

Sutherland L
(2018)
LIF-dependent survival of embryonic stem cells is regulated by a novel palmitoylated Gab1 signalling protein.
in Journal of cell science
Description | Analysis of the substrate network and neurodevelopmental functions of the intellectual disability enzyme, zDHHC9 |
Amount | £472,115 (GBP) |
Funding ID | MR/S011080/1 |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 04/2019 |
End | 04/2022 |
Description | British Heart Foundation Project Grant |
Amount | £249,000 (GBP) |
Funding ID | 29782. CRM:0001933 |
Organisation | British Heart Foundation (BHF) |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 01/2013 |
End | 12/2015 |
Description | Diabetes UK studentship |
Amount | £82,700 (GBP) |
Organisation | Diabetes UK |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2011 |
End | 09/2014 |
Description | MRC project grant |
Amount | £543,378 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 06/2011 |
End | 07/2014 |
Description | Responsive mode |
Amount | £460,841 (GBP) |
Funding ID | BB/L022087/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 08/2014 |
End | 09/2017 |
Description | Responsive mode research grants |
Amount | £405,771 (GBP) |
Funding ID | MR/R011842/1 |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 04/2018 |
End | 05/2021 |
Description | Wellcome Trust project grant |
Amount | £264,655 (GBP) |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2011 |
End | 06/2015 |
Description | responsive mode |
Amount | £396,454 (GBP) |
Funding ID | BB/J006432/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 11/2012 |
End | 11/2015 |
Title | Azide and alkyne derivatives of fatty acids for analysis of S-acylation by click chemistry |
Description | Azide/alkyne derivatives of different fatty acids have been developed to assay the fatty acid selectivity of enzymes involves in S-acylation. |
Type Of Material | Technology assay or reagent |
Year Produced | 2015 |
Provided To Others? | Yes |
Impact | manuscripts in preparation |
Title | CSP Isoform Antibodies |
Description | Cysteine-string protein (CSP) plays an essential neuroprotective function in the brain. Recently, two novel isoforms (CSPb and CSPg) were identified. We have successfully generated isoform-specific antibodies against these proteins. |
Type Of Material | Antibody |
Year Produced | 2012 |
Provided To Others? | Yes |
Impact | manuscript published: 20499929 |
Title | DHHC2 |
Description | Novel antibodies against DHHC2 have been generated in rabbits |
Type Of Material | Antibody |
Year Produced | 2012 |
Provided To Others? | Yes |
Impact | manuscript published: 21471008 |
Title | SNAP25a and SNAP25b antibodies |
Description | SNAP25a and SNAP25b play essential but non-overlapping functions in brain physiology. The proteins are highly similar at the amino acid level and several research groups had failed to develop specific antibodies. We have now generated and characterised antibodies that specifically recognise SNAP25a and SNAP25b. These tools will allow a careful assessment of the gross localisation and microlocalisation of these proteins in the brain. |
Type Of Material | Antibody |
Year Produced | 2012 |
Provided To Others? | Yes |
Impact | manuscript published: 21526988 |
Description | BDSRA application |
Organisation | King's College London |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Prepared a grant application for submission based on previous work from the group on DNAJC5 |
Collaborator Contribution | Provided expertise to support application |
Impact | biochemistry, cell biology and in vivo biology |
Start Year | 2013 |
Description | DHHC substrate specificity |
Organisation | National Institute for Physiological Sciences |
Country | Japan |
Sector | Academic/University |
PI Contribution | Designed assays to map the substrate specificities of this important enzyme family. |
Collaborator Contribution | Supply of a cloned DNA encoding a family of 23 DHHC palmitoyl transferases. These have been essential for 2 recent publications. |
Impact | PMID: 18596047 PMID: 19158383 |
Start Year | 2006 |
Description | GM1 Antibodies |
Organisation | University of Glasgow |
Department | Institute of Biomedical and Life Sciences |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Expertise in the analysis of lipid rafts. |
Collaborator Contribution | Shared publication of a mansucript. |
Impact | PMID: 19221437 |
Start Year | 2007 |
Description | Neuronal Ceroid Lipofuscinosis |
Organisation | Washington University in St Louis |
Department | Department of Psychiatry |
Country | United States |
Sector | Academic/University |
PI Contribution | My research team was the major partner in this research collaboration. We identified a novel interplay between genetic mutations and post-translational modifications in the induction of protein aggregation linked with neurodegeneration. We initiated interaction with the partner to obtain human brain samples to further this investigation. |
Collaborator Contribution | Supply of human brain tissue from patients with neuronal ceroid lipofuscinosis. |
Impact | Greaves J., Lemonidis K., Gorleku O.A., Cruchaga C., Grefen C., and Chamberlain L.H. (2012). Palmitoylation-induced aggregation of cysteine-string protein mutants that cause neuronal ceroid lipofuscinosis. Journal of Biological Chemistry 2012 Aug 19. |
Start Year | 2011 |
Description | Raft Association of CD32a |
Organisation | University of Edinburgh |
Department | MRC Centre for Inflammation Research |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Expertise in the analysis of protein palmitoylation and targeting of proteins to lipid rafts. Design of experiments and drafting of mansucript. |
Collaborator Contribution | Joint publication of a manuscript on palmitoylation and raft targeting of CD32a. |
Impact | PMID: 19494328 |
Start Year | 2008 |
Description | Regulation of Potassium Channels by Palmitoylation |
Organisation | University of Edinburgh |
Department | Centre for Integrative Physiology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Expertise in the use of radiolabelling to detect palmitoylation of BK channels. Contributed to experimental design and drafting of manuscript. |
Collaborator Contribution | Shared publication on regulation of BK potassium channels by palmitoylation. |
Impact | PMID: 19098106 |
Start Year | 2008 |
Description | SNARE Protein Trafficking |
Organisation | University of Edinburgh |
Department | Centre for Integrative Physiology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Shared expertise in subject area and helped with design of experiments |
Collaborator Contribution | This joint study resulted in a publication describing how SNARE proteins traffic to the plasma membrane and complementing our other independent studies in this area (i.e. PMID: 19158383 ). |
Impact | PMID: 18057031 |
Start Year | 2007 |
Description | Tetherin |
Organisation | University of Bristol |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Performed palmitoylation assays on tetherin proteins |
Collaborator Contribution | Performed assays looking at raft association and localisation of tetherin proteins |
Impact | PMC3828773 |
Start Year | 2012 |
Description | partnership application |
Organisation | University of Dundee |
Department | College of Life Sciences |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I have established a research alliance between scientists interested in protein palmitoylation. The aim of this alliance is to establish and develop techniques and reagents to advance the study of palmitoylation. A preliminary application for a partnership grant was put to the MRC, and we have been invited to submit a full application for funding. |
Collaborator Contribution | The research partners were involved in drafting a full application for MRC funding. |
Impact | none yet |
Start Year | 2010 |
Description | partnership application |
Organisation | University of Glasgow |
Department | Institute of Molecular Cell and Systems Biology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I have established a research alliance between scientists interested in protein palmitoylation. The aim of this alliance is to establish and develop techniques and reagents to advance the study of palmitoylation. A preliminary application for a partnership grant was put to the MRC, and we have been invited to submit a full application for funding. |
Collaborator Contribution | The research partners were involved in drafting a full application for MRC funding. |
Impact | none yet |
Start Year | 2010 |
Description | partnership in analysis of zDHHC9 function in neuronal physiology |
Organisation | University of British Columbia |
Country | Canada |
Sector | Academic/University |
PI Contribution | Back-crossing and supply of ZDHHC9 knockout mice |
Collaborator Contribution | Analysis of neuronal function in knockout mice. |
Impact | In preparation |
Start Year | 2017 |
Description | kickstart |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | Yes |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | A small group (5-6 students) from low-achieving schools. We discussed with the students our work and science in general, encouraging them to apply for University places. none |
Year(s) Of Engagement Activity | 2009,2010 |
Description | school science project |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | 12 school pupils (age 15-16) and their teacher visited our laboratory to learn more about our research related to neurodegeneration. There was both a theoretical and a practical component. Several pupils reported an interest in pursuing a higher degree in biology-related subjects and this was reinforced by the visit. The school has also reported that they would be interested in participating in this event again. |
Year(s) Of Engagement Activity | 2016 |