Applying epigenetic modifying drugs to treat Friedreich's Ataxia
Lead Research Organisation:
Medical Research Council
Department Name: UNLISTED
Abstract
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Technical Summary
We have recently shown that the GAA-triplet-repeat that pathologically expands and silences the frataxin (FXN) gene in the commonest autosomal recessive ataxia, Friedreich's Ataxia (FRDA), mediates transgene silencing in a manner reminiscent of chromatin-mediated silencing (Saveliev et al., 2003). This has led to the development of HDAC inhibitors (HDACis) which can upregulate frataxin (Festenstein, 2006; Herman et al., 2006) and are therefore potential treatments for this, as yet, untreatable and devastating condition. This proposal is to take forward a particular HDACi, known as compound z (due to patent restrictions), which we have found to be effective in up-regulating frataxin greater than 2-fold in lymphoblastoid cell lines and primary cells from patients with FRDA. Direct comparison with the HDACi, 4b, shows it to be more effective and it is certainly less toxic. As compound z has already been shown to have an excellent safety profile in humans and to cross the blood brain barrier, it has clear potential as a therapy for FRDA. We will now investigate its effects in humanised mouse models of FRDA. Thus, we will treat mice with the inhibitor and analyse the tissues that are characteristically affected by FRDA, such studies are clearly not possible in humans. Tissues will be analysed for FXN expression, FXN chromatin structure and for pathological changes. The mice will also be crossed to epigenetic-modifier mice to further dissect the mechanism of silencing and mechanism of action of this and other potential novel treatments at the chromatin/transcriptional level. FRDA can therefore be seen as a prototypic disease in which gene-silencing is the cause. We are well-placed to undertake this study as all the necessary techniques are already well established in the lab. Moreover, the CSC has a critical mass of researchers interested in epigenetics making this an ideal environment to pursue these studies. Compound z has a real possibility to become a treatment for FRDA, this study will go a long way to developing this potential.
Organisations
- Medical Research Council (Lead Research Organisation)
- Ataxia UK (Collaboration)
- Pfizer Ltd (Collaboration)
- University Hospital Aachen (Collaboration)
- European Friedreich's Ataxia Consortium for Translational Studies (EFACTS) (Collaboration)
- Findacure (Collaboration)
- Wellcome Trust (Collaboration)
- National Hospital for Neurology and Neurosurgery (Collaboration)
- IMPERIAL COLLEGE LONDON (Collaboration)
People |
ORCID iD |
Richard Festenstein (Principal Investigator) |
Publications
Chan PK
(2013)
Heterochromatinization induced by GAA-repeat hyperexpansion in Friedreich's ataxia can be reduced upon HDAC inhibition by vitamin B3.
in Human molecular genetics
Festenstein R
(2012)
Context is everything: activators can also repress.
in Nature structural & molecular biology
Festenstein R.
(2015)
OVERCOMING TRIPLET REPEAT-MEDIATED EPIGENETIC SILENCING IN HUMANS
in JOURNAL OF INTELLECTUAL DISABILITY RESEARCH
Kadirvelu B
(2023)
A wearable motion capture suit and machine learning predict disease progression in Friedreich's ataxia.
in Nature medicine
Kathiresu Nageshwaran Sathiji
(2017)
Epigenetic transcriptional regulation in Friedreich's Ataxia
Libri V
(2014)
Epigenetic and neurological effects and safety of high-dose nicotinamide in patients with Friedreich's ataxia: an exploratory, open-label, dose-escalation study.
in Lancet (London, England)
Nageshwaran S
(2015)
Epigenetics and Triplet-Repeat Neurological Diseases.
in Frontiers in neurology
Reetz K
(2019)
Protocol of a randomized, double-blind, placebo-controlled, parallel-group, multicentre study of the efficacy and safety of nicotinamide in patients with Friedreich ataxia (NICOFA).
in Neurological research and practice
Description | FindaCure project to fund rare disease research |
Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Participation in a guidance/advisory committee |
Description | A randomized double-blind placebo-controlled parallel-group multi-centre study of the efficacy and safety of nicotinamide in patients with Friedreich's ataxia (NICOFA) |
Amount | € 1,700,000 (EUR) |
Organisation | E-Rare |
Sector | Public |
Country | France |
Start | 09/2017 |
End | 10/2020 |
Description | BRC Imperial |
Amount | £140,000 (GBP) |
Organisation | National Institute for Health Research |
Department | NIHR Imperial Biomedical Research Centre |
Sector | Public |
Country | United Kingdom |
Start | 06/2013 |
End | 12/2014 |
Description | EC FP7 (EFACTS) |
Amount | £513,746 (GBP) |
Funding ID | 242193 |
Organisation | European Commission |
Department | Seventh Framework Programme (FP7) |
Sector | Public |
Country | European Union (EU) |
Start | 04/2010 |
End | 04/2015 |
Description | Efficacy and Mechanism Evaluation Programme NIHR/MRC EME Project:The UK arm of a multi-centre study of the efficacy and safety of nicotinamide in patients with Friedreich's ataxia (NICOFA) |
Amount | £900,000 (GBP) |
Funding ID | EME Project:17/90/01 |
Organisation | NIHR Evaluation, Trials and Studies Coordinating Centre (NETSCC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2019 |
End | 10/2022 |
Description | GMEC Rare Disease Consortium Pfizer |
Amount | £275,000 (GBP) |
Organisation | Pfizer Inc |
Sector | Private |
Country | United States |
Start | 03/2015 |
End | 03/2018 |
Description | Research Grant |
Amount | $50,000 (USD) |
Organisation | Friedreich's Ataxia Research Alliance |
Sector | Charity/Non Profit |
Country | United States |
Start | 12/2016 |
End | 12/2018 |
Description | Response mode project grant |
Amount | £863,446 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 08/2012 |
End | 09/2016 |
Description | Rutherford Innovation Fellowship |
Amount | £250,000 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 11/2017 |
End | 11/2019 |
Description | Translational Project Grant Freidreich's ataxia |
Amount | £118,000 (GBP) |
Organisation | Ataxia UK |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 03/2011 |
End | 12/2013 |
Description | Wellcome Trust Clinical Training Fellowship |
Amount | £247,000 (GBP) |
Funding ID | P48395 |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2013 |
End | 10/2016 |
Title | FRDA cohort |
Description | Set-up database for patients suffering from Friedreich's ataxia |
Type Of Material | Model of mechanisms or symptoms - human |
Provided To Others? | No |
Impact | Obtained PBLs, chromatin and RNA inorder to perform epigenotype/phenotype correlations. |
Title | Motion Capture Suit analytics |
Description | Developing methodology to analyse behaviourmetric data in Friedreich's ataxia |
Type Of Material | Data analysis technique |
Provided To Others? | No |
Impact | The main impact promises to shorten the length of clinical trials by providing a more robust biomarker for disease progression by measuring movements during everyday living. |
Description | Ataxia UK |
Organisation | Ataxia UK |
Country | United Kingdom |
Sector | Charity/Non Profit |
PI Contribution | Performed Pilot study funded by Ataxia UK together with NIHR. Involved in PPP to design current clinical trial and contribute to patient travel costs. Took part in meetings with patients to discuss research. Webnairs jointly organised with FARA. |
Collaborator Contribution | Organised patient responses to trial design |
Impact | EME grant for clinical efficacy of nicotinamide in Friedreich's ataxia |
Start Year | 2012 |
Description | Clinical Study on FRDA |
Organisation | National Hospital for Neurology and Neurosurgery |
Country | United Kingdom |
Sector | Hospitals |
PI Contribution | Established a proof-of-concept clinical study (funded by Ataxia UK) following our DPFS grant which demonstrated proof-of-concept in model systems. The clinical study is to establish whether an HDACi can upregulate the aberrantly silenced Frataxin gene in Friedreich's ataxia |
Collaborator Contribution | Provided staff, facilities and expertise of the Wellcome Trust Clinical Research Facility at the Hammersmith Hospital |
Impact | Ongoing clinical study, not yet complete |
Start Year | 2011 |
Description | Clinical Study on FRDA |
Organisation | Wellcome Trust |
Department | Wellcome Trust Clinical Research Facility |
Country | United Kingdom |
Sector | Charity/Non Profit |
PI Contribution | Established a proof-of-concept clinical study (funded by Ataxia UK) following our DPFS grant which demonstrated proof-of-concept in model systems. The clinical study is to establish whether an HDACi can upregulate the aberrantly silenced Frataxin gene in Friedreich's ataxia |
Collaborator Contribution | Provided staff, facilities and expertise of the Wellcome Trust Clinical Research Facility at the Hammersmith Hospital |
Impact | Ongoing clinical study, not yet complete |
Start Year | 2011 |
Description | EFACTS |
Organisation | European Friedreich's Ataxia Consortium for Translational Studies (EFACTS) |
Country | European Union (EU) |
Sector | Charity/Non Profit |
PI Contribution | The current project emerged from this EU Network of excellence. Several of the members across europe continue to participate in the study which grew out of a natural history study on Friedreich's ataxia. |
Collaborator Contribution | Members contribute to the clinical project through E-rare funding stream. NICOFA Trial is coordinated in Germany (Aachen). We pro |
Impact | The protocol for NICOFA was published 2019 - included in publications |
Start Year | 2012 |
Description | Findacure |
Organisation | Findacure |
Country | United Kingdom |
Sector | Charity/Non Profit |
PI Contribution | Investigation with Findacure to calculate the cost benefits of reversing pathology in Friedreich's ataxia in order to make the case for funding a clinical trial of a novel disease modifying strategy in this disease |
Collaborator Contribution | Our collaborators provided methodology to model the economics of costs for looking after patients with Friedreich's ataxia |
Impact | This is a mutli-disciplinary projkect pulling together economics and health researchers |
Start Year | 2016 |
Description | GMEC Rare Disease Consortium |
Organisation | Pfizer Ltd |
Country | United Kingdom |
Sector | Private |
PI Contribution | Friedreich's ataxia research on novel therapeutics |
Collaborator Contribution | Collaboration between Oxford University, UCL and Imperial on clinical and basic research aspects of Friedreich's ataxia |
Impact | Mitochondrial funcction, FXN gene regulation, epigenetics |
Start Year | 2015 |
Description | Imperial College Clinical Research Facility |
Organisation | Imperial College London |
Department | NIHR/Wellcome Trust Imperial Clinical Research Facility |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Conducted pilot study which seeded present study for clinical efficacy of nicotinamide in Friedreich's ataxia |
Collaborator Contribution | Enabled patients to be studied contribution of infrastructure for this complex study into clinical efficacy of nicotinamide in Friedreich's ataxia |
Impact | Libri et al Lancet 2014 - see publications. NIHR/MRC EME grant funding |
Start Year | 2012 |
Description | NICOFA -E-rare funding for randomised controlled study for nicotinamide in Friedreich's ataxia |
Organisation | University Hospital Aachen |
Country | Germany |
Sector | Hospitals |
PI Contribution | We have discovered that the aberrant gene silencing that occurs in Friedreich's ataxia causing the disease can be overcome in patients. This suggests that long-term treatment with nicotinamide would be expected to ameliorate disease progression in this frequently devastating and, so far, incurable disease. This study which was published in the Lancet has seeded further collaborations across EUrope to secure enough patients for a placebo controlled study. |
Collaborator Contribution | The partners have secured funding from a transnational E-rare funded collaboration. We are seeking funding from the MRC/NIHR EME scheme to fund the UK arm of the controlled trial. |
Impact | E-rare funding granted. EME proposal - full proposal invited. |
Start Year | 2016 |
Description | UCLH NICOFA arm |
Organisation | National Hospital for Neurology and Neurosurgery |
Country | United Kingdom |
Sector | Hospitals |
PI Contribution | Demonstrated that nicotinamide could upregulate the aberrantly silenced Frataxin gene in Friedreich's ataxia (Lancet 2014). |
Collaborator Contribution | Provision of patients, design of protocol. |
Impact | Pilot study (Lancet 2014) and Human Mol. Genet paper (2013) seeded EME NICOFA study for clinical efficacy of nicotinamide in slowing progression of Friedreich's ataxia |
Start Year | 2012 |
Title | Identified potential therapeutic targets and therapies for Friedreich's ataxia |
Description | We have found that particular histone deacetylase inhibitors can upregulate the aberrantly silenced Frataxin gene which is repressed in Friedreich's ataxia. |
IP Reference | |
Protection | Protection not required |
Year Protection Granted | 2008 |
Licensed | No |
Impact | This has resulted in ourselves and opthers developing novel therapeutics which are undergoing testing in mouse models for Friedreich's ataxia. |
Title | HDACi therapy for FRDA |
Description | Identification of an HDAC inhibitor that can upregulate Frataxin in cells from patients with Friedreich's ataxia |
Type | Therapeutic Intervention - Drug |
Current Stage Of Development | Initial development |
Year Development Stage Completed | 2012 |
Development Status | Under active development/distribution |
Impact | Potential as a therapeutic for Friedreich's ataxia which is currently incurable |
Description | "Key Role for HUSH in Triplet-Repeat Silencing in Disease?" GRC conference presentation |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | High level meeting recognising significance of work and enabling collaborations |
Year(s) Of Engagement Activity | 2019 |
URL | https://www.grc.org/epigenetics-conference/2019/ |
Description | International ataxia research conference presentation |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Using induced pluripotent stem cell derived cardiomyocytes as a model to study Friedreich's ataxia - Poster presentation. Considerable interest from the audience which consisted of internationally recognised scientists and their teams as well as the leading charities supporting ataxia research |
Year(s) Of Engagement Activity | 2022 |
URL | https://ataxiacongress.org/abstracts.htm |
Description | Invited Speaker at Ataxia Telangectasia meeting Napoli |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Excellent Scientific and clinical meeting on this subject - I gave a talk on machine learning analysis of movement in patients and was invited to take part in funding strategy meetin |
Year(s) Of Engagement Activity | 2018 |
URL | http://www.centercongressi.com/ATconference2018/ |
Description | Symposium on epigenetics and disease |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | Yes |
Type Of Presentation | Keynote/Invited Speaker |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | approx. 250 people attended a vibrant and fascinating meeting on the interface between epigenetics and understanding disease Experts in the field holding an open scientific meeting fostering science and public engagement |
Year(s) Of Engagement Activity | 2013 |
URL | http://www.college-de-france.fr/site/en-jean-louis-mandel/seminar-2013-05-21-09h00.htm |
Description | TV documentary |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Type Of Presentation | Keynote/Invited Speaker |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Interviewed for EU funded TV documentarty on Epigenetics Communicated key ideas to a large lay audience |
Year(s) Of Engagement Activity | 2009 |
Description | TV-interview Dublin |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Type Of Presentation | Keynote/Invited Speaker |
Geographic Reach | National |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Interviewed at International conference for Friedreich's Ataxia Raised the profile of the need for research in triplet-repeat diseases |
Year(s) Of Engagement Activity | 2008 |
Description | Webinar Ataxia UK |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Participants in your research and patient groups |
Results and Impact | Triggered many questions and comments relating to the next stage of our research After the webinar I was given advice from experts on how to conduct a clinical trial for efficay of our novel treatment for Friedreich's ataxia |
Year(s) Of Engagement Activity | 2014 |
Description | Webinar Friedreich's ataxia research alliancce |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Supporters |
Results and Impact | Feedback following publication of Lancet paper on epigenetic therapy for Friedreich's ataxia |
Year(s) Of Engagement Activity | 2014 |