Proposal to enhance linked research in human fat metabolism & pathophysiology between MRC HNR, MRC MDU and MRC EU
Lead Research Organisation:
MRC Human Nutrition Research Group
Abstract
According to statistics reported by Diabetes UK in 2010, since 1996 the number of people diagnosed with diabetes has increased from 1.4 million to 2.6 million, and is set to rise to four million people by 2025. The majority of these cases are associated with type 2 diabetes (T2DM), with the increased prevalence arising from an increasingly aged population and the rise in overweight and obese people. However, there is increasing realisation that T2DM is not a homogenous disease and can arise from a number of different pathways related to diet, life style and genetic influences. Because of this there is increasing realisation that ‘one size’ does not fit all in terms of treatment. Indeed, certain individuals may particularly benefit from targeted diet and drug interventions as part of an approach referred to as ‘personalised medicine.’ This initiative sets out to understand the underlying pathways that influence why an individual might develop T2DM using analytical chemistry approaches to define patient groups according to their metabolism. We plan to use metabolic changes, termed biomarkers, to better identify patient groups who would benefit from particular treatments. This personalised medicine approach should improve health of individuals as well as providing a significant financial saving to the healthcare system.
Technical Summary
With the increasing burden that type 2 diabetes (T2DM) and aspects of the metabolic syndrome place on the National Health Service and the wider economy there is a drive to stratify patients into treatment groups to maximise response to interventions to prevent insulin resistance (IR) be it through diet, physical activity or drug intervention. By its very definition the metabolic syndrome is a cluster of disorders. It is also now a widely held view that T2DM is a heterogeneous collection of pathological disorders all sharing the common outcome of hyperglycaemia. There is a growing realisation that effective treatments for complex disorders such as T2DM and dyslipidaemia will require “deep phenotyping” of the individuals to allow the implementation of personalised medicine and nutritional interventions.
This drive towards personalised medicine and nutrition has been impaired by the lack of personalised diagnosis. The limited development and validation of relatively few biomarkers hampers real stratification of individuals, and the majority of the current markers used for the diagnosis of the metabolic syndrome and T2DM are associated with the effects of the clinical endpoint or the clinical endpoint itself. One reason for this lack of translation is the difficulties of performing controlled intervention studies in humans to validate molecular mechanisms of a potential diagnostic biomarker alongside the biomarker discovery studies. As part of the MRC/Wellcome Trust funded Cambridge Initiative in Obesity and Metabolic Disease we are applying human intervention studies in order to better understand the mechanistic basis underpinning potential biomarkers developed within the groups led by Griffin and Bluck as well as collaborators at MRC Units and the University of Cambridge that make up the rest of the Initiative. To achieve this we are applying our world-class specialisms in high resolution mass spectrometry of lipids and stable isotope analysis for kinetic measurement of substrate flux to measure biomarkers and flux changes in well controlled human physiological interventions.
The current focus is in the understanding of the contribution of de novo lipogenesis (DNL) to fatty liver disease in those that are either considered healthy or have mild IR. From our previous work in lipodystrophic patients we know that triglycerides associated with DNL are increased in blood plasma and the activity of the pathway is raised as measured by stable isotope studies. We are currently conducting studies to directly measure DNL alongside blood plasma triglycerides using a combination of stable isotope techniques and high resolution mass spectrometry in different patient groups and at risk individuals.
This drive towards personalised medicine and nutrition has been impaired by the lack of personalised diagnosis. The limited development and validation of relatively few biomarkers hampers real stratification of individuals, and the majority of the current markers used for the diagnosis of the metabolic syndrome and T2DM are associated with the effects of the clinical endpoint or the clinical endpoint itself. One reason for this lack of translation is the difficulties of performing controlled intervention studies in humans to validate molecular mechanisms of a potential diagnostic biomarker alongside the biomarker discovery studies. As part of the MRC/Wellcome Trust funded Cambridge Initiative in Obesity and Metabolic Disease we are applying human intervention studies in order to better understand the mechanistic basis underpinning potential biomarkers developed within the groups led by Griffin and Bluck as well as collaborators at MRC Units and the University of Cambridge that make up the rest of the Initiative. To achieve this we are applying our world-class specialisms in high resolution mass spectrometry of lipids and stable isotope analysis for kinetic measurement of substrate flux to measure biomarkers and flux changes in well controlled human physiological interventions.
The current focus is in the understanding of the contribution of de novo lipogenesis (DNL) to fatty liver disease in those that are either considered healthy or have mild IR. From our previous work in lipodystrophic patients we know that triglycerides associated with DNL are increased in blood plasma and the activity of the pathway is raised as measured by stable isotope studies. We are currently conducting studies to directly measure DNL alongside blood plasma triglycerides using a combination of stable isotope techniques and high resolution mass spectrometry in different patient groups and at risk individuals.
Organisations
- MRC Human Nutrition Research Group, United Kingdom (Lead Research Organisation)
- University of Oxford, United Kingdom (Collaboration)
- University of Cambridge (Collaboration)
- AstraZeneca plc (Collaboration)
- Agilent Technologies UK Ltd (Collaboration)
- Newcastle University, United Kingdom (Collaboration)
- University of Bari Aldo Moro (Collaboration)
Publications

Acharjee A
(2016)
Integration of metabolomics, lipidomics and clinical data using a machine learning method.
in BMC bioinformatics

Acharjee A
(2017)
The translation of lipid profiles to nutritional biomarkers in the study of infant metabolism.
in Metabolomics : Official journal of the Metabolomic Society

Ament Z
(2016)
PPAR-pan activation induces hepatic oxidative stress and lipidomic remodelling.
in Free radical biology & medicine

Ament Z
(2016)
Metabolomics dataset of PPAR-pan treated rat liver.
in Data in brief

Azzu V
(2021)
Suppression of insulin-induced gene 1 (INSIG1) function promotes hepatic lipid remodelling and restrains NASH progression.
in Molecular metabolism

Azzu V
(2020)
Adipose Tissue-Liver Cross Talk in the Control of Whole-Body Metabolism: Implications in Nonalcoholic Fatty Liver Disease.
in Gastroenterology

Charidemou E
(2017)
The use of stable isotopes in the study of human pathophysiology
in The International Journal of Biochemistry & Cell Biology

D'Amore S
(2018)
Identification of miR-9-5p as direct regulator of ABCA1 and HDL-driven reverse cholesterol transport in circulating CD14+ cells of patients with metabolic syndrome.
in Cardiovascular research

D'Amore S
(2016)
Genes and miRNA expression signatures in peripheral blood mononuclear cells in healthy subjects and patients with metabolic syndrome after acute intake of extra virgin olive oil.
in Biochimica et biophysica acta

Dehghan A
(2022)
Metabolome-wide association study on ABCA7 indicates a role of ceramide metabolism in Alzheimer's disease
in Proceedings of the National Academy of Sciences
Description | Amegen Summer studentship - Xavier Fernandez |
Amount | £3,000 (GBP) |
Organisation | Amgen Inc |
Sector | Private |
Country | United States |
Start | 05/2015 |
End | 08/2015 |
Description | Astra Zeneca CASE studentship |
Amount | £40,000 (GBP) |
Organisation | AstraZeneca |
Sector | Private |
Country | United Kingdom |
Start | 09/2016 |
End | 09/2019 |
Description | BHF Intermediate fellowship for KT |
Amount | £250,000 (GBP) |
Organisation | British Heart Foundation (BHF) |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2016 |
End | 09/2019 |
Description | GSK-Astra Zeneca partnership awards |
Amount | £417,000 (GBP) |
Organisation | GlaxoSmithKline (GSK) |
Sector | Private |
Country | Global |
Start | 03/2017 |
End | 03/2020 |
Description | High-throughput "omic" science and imaging call |
Amount | £1,300,000 (GBP) |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 06/2013 |
End | 07/2014 |
Description | Medimmune industrial studentship |
Amount | £100,000 (GBP) |
Organisation | AstraZeneca |
Department | MedImmune |
Sector | Private |
Country | United Kingdom |
Start | 09/2016 |
End | 09/2019 |
Description | Technology Development Grant, MetaboFlow - the development of standardised workflows for processing metabolomics data to aid reproducible data sharing and big data initiatives |
Amount | £900,000 (GBP) |
Funding ID | 202952/B/16/Z |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 12/2016 |
End | 11/2019 |
Description | UK Consortium for MetAbolic Phenotyping (MAP UK) |
Amount | £2,138,277 (GBP) |
Funding ID | MR/S010483/1 |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 05/2019 |
End | 05/2023 |
Description | Wellcome Trust and GSK studentship in translational medicine |
Amount | £65,000 (GBP) |
Organisation | Wellcome Trust |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 09/2013 |
End | 09/2016 |
Description | Antonio Moschetta. Lipidomics and Bile Acid profiling in liver disease |
Organisation | University of Bari |
Country | Italy |
Sector | Academic/University |
PI Contribution | Collaborating on understanding the role bile acids play in fatty liver disease |
Collaborator Contribution | Provided animal models for the collaboration. |
Impact | None to date |
Start Year | 2017 |
Description | Cambridge Metabolism Network |
Organisation | AstraZeneca |
Department | MedImmune |
Country | United Kingdom |
Sector | Private |
PI Contribution | I am a member of the organising committee for the Cambridge Metabolomics Network. This has included two meetings on metabolism. The events have been sponsored by AZ, MedImmune and Novartis and contact with AZ led to a CASE pHD studentship. |
Collaborator Contribution | To my group they have provided a PhD studentship. |
Impact | Got a CASE studentship in a multi-disciplinary research area. |
Start Year | 2015 |
Description | Cambridge Metabolism Network |
Organisation | AstraZeneca |
Country | United Kingdom |
Sector | Private |
PI Contribution | I am a member of the organising committee for the Cambridge Metabolomics Network. This has included two meetings on metabolism. The events have been sponsored by AZ, MedImmune and Novartis and contact with AZ led to a CASE pHD studentship. |
Collaborator Contribution | To my group they have provided a PhD studentship. |
Impact | Got a CASE studentship in a multi-disciplinary research area. |
Start Year | 2015 |
Description | Collaboration with Cardiovascular medicine, University of Oxford |
Organisation | University of Oxford |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We are collaborating with Cardiovascular medicine at Oxford to understand the role metabolism plays in hypertrophic cardiomyopathy (HCM). The focus of this work is a translational medicine study of HCM. Our role is to help understand the metabolic changes that are associated with HCM, and in particular the switch from fat metabolism towards carbohydrates (fetal reprogramming). |
Collaborator Contribution | We ghave acquired pilot data for grant applications and written grant proposals |
Impact | None to date |
Start Year | 2013 |
Description | Collaboration with Medimmune |
Organisation | AstraZeneca |
Department | MedImmune |
Country | United Kingdom |
Sector | Private |
PI Contribution | We have initated a collaboration with medimmune in terms of making our expertise and facilities in metabolomics and lipidomics available to the cardiovascular and metabolic diseases group and in return we have been offered access to their high throughput cell culture facilities, we are discussing CASE studentships and also access to previously generated mouse models of obesity and fatty liver disease. |
Collaborator Contribution | See above! |
Impact | None as yet |
Start Year | 2014 |
Description | Collaboration with the Department of Physiology Development & Neuroscience, University of Cambridge (HNR project 6503) |
Organisation | University of Cambridge |
Department | Department of Physiology, Development and Neuroscience |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Liver metabolome (HNR project 6503), liver, plasma, adipose and intestine samples were collected for a mouse strain and gender comparison of the lipid and low molecular weight species of the liver metabolome (many thanks to JLG, Xinzhu Wang, LR and Frank Sanders for the sample collection. |
Collaborator Contribution | Andrew Murray's group in the Department of Physiology Development and Neuroscience, UCam oversaw the study |
Impact | TBC |
Start Year | 2014 |
Description | Collaborations with Newcastle University on fatty liver disease |
Organisation | Newcastle University |
Department | Institute of Health and Society |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Fiona Oakley. Metabolic control of liver regeneration and hepatocellular carcinogenesis Q Anstee. SNPs in NASH affecting lipidome |
Collaborator Contribution | Fiona Oakley. Metabolic control of liver regeneration and hepatocellular carcinogenesis Q Anstee. SNPs in NASH affecting lipidome |
Impact | Still in progress |
Start Year | 2017 |
Description | Lipidomics in a population eating the Mediterranean diet |
Organisation | University of Bari |
Country | Italy |
Sector | Academic/University |
PI Contribution | FS and MVa have established a collaboration with the University of Bari, Italy, for a project that will translate our murine studies into human research of the link between de novo lipogensis and fatty liver disease. The MTA is now in place and the University of Bari received the final approval from the ethics committee for sending the serum samples. . |
Collaborator Contribution | Providing blood plasma samples from an on-going Italian cohort |
Impact | None to date - currently processing data. |
Start Year | 2015 |
Description | Thought Leader Award from Agilent |
Organisation | Agilent Technologies |
Country | United States |
Sector | Private |
PI Contribution | Agilent have awarded a Thought Leader award to the head of group. This consists of a brand new ion mobility mass spectrometry plus substantial funds for research to develop this new piece of equipment. In turn we will develop new mass spectrometry tools based around ion mobility for lipid detection. |
Collaborator Contribution | see above. |
Impact | The collaboration starts in december 2014 |
Start Year | 2014 |
Description | "Meet the editor" Workshop at the Metabolomics RFMF-Metabomeeting |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | Gave a workshop on how an editor handles a manuscript to help the audience understand what they need to do to improve the chances of their work being published in a good journal. |
Year(s) Of Engagement Activity | 2020 |
URL | https://rfmf-mpf-2020.sciencesconf.org/resource/page/id/29 |
Description | 2nd Metabolomics Sardinian Scientific School |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | 2nd Metabolomics Sardinian Scientific School was aimed at post-grad students new to the field of metabolomics. We gave seminars and workshops in various tools and techniques in metabolomics. |
Year(s) Of Engagement Activity | 2016 |
Description | BBC filming as part of a news report on fat metabolism |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Media (as a channel to the public) |
Results and Impact | With MRC Epidemiology we took part in a documentary by the BBC on fat intake. This has led to a number of other media contacts since then. |
Year(s) Of Engagement Activity | 2015 |
Description | Cambridge Science Week 2017 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | took part in Cambridge Science week and put on a display on personalised medicine and health using advanced biochemical techniques. |
Year(s) Of Engagement Activity | 2017 |
Description | Contact with the BBC about a scientific program on diet and food |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | CW contacted by Milla Harrison from the BBC doing another Horizon programme - The Biology and Environmental factors behind Obesity. Wanted some advice on genes and genotyping. |
Year(s) Of Engagement Activity | 2015 |
Description | Danish-UK Metabolism meeting |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | Taught postgrads how to use metabolomics and lipidomics to study aspects of type 2 diabetes and related disorders. |
Year(s) Of Engagement Activity | 2017 |
Description | Debating matters - regional final judge |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | Yes |
Geographic Reach | Regional |
Primary Audience | Schools |
Results and Impact | We encouraged students to both debate and think about applying to the University of Cambridge see above |
Year(s) Of Engagement Activity | 2014 |
Description | Discussion with Trust me I'm a doctor |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Media (as a channel to the public) |
Results and Impact | I advised on a program on energy balance and dieting pills. Still waiting for the program to air! |
Year(s) Of Engagement Activity | 2014 |
Description | French Embassy Seed meeting |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | JLG, LR, AA and ZA were invited to the French Embassy to discuss collaborations with colleagues from INRA on metabolomics. This was following a successful application to the French government to fund the meeting by JLG and his counterparts in France. |
Year(s) Of Engagement Activity | 2015 |
Description | Hosted a visit from Singaporean students |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Type Of Presentation | Keynote/Invited Speaker |
Geographic Reach | International |
Primary Audience | Schools |
Results and Impact | We hosted a visit from 6th form Singaporean students interested in applying to Cambridge as undergraduates in science related areas. They gave me a box of chocolates! |
Year(s) Of Engagement Activity | 2013 |
Description | How the fat flies - Science Week |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | The University of Cambridge Science Festival took place on Saturday 14th and Sunday 15th March. My group had a stand at the Corn Exchange. The stand was split into two, with one half focusing on nutrition and the other on mass spectrometry. |
Year(s) Of Engagement Activity | 2015 |
Description | Metabolic Complications in Obesity |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | A conference/workshop to promote new methods for understanding the causes and consequences of obesity. |
Year(s) Of Engagement Activity | 2017 |
Description | Metabolomics Workshop at the 20th International Symposium on Microsomes and drug oxidations, stuttgart, germany |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | Yes |
Geographic Reach | International |
Primary Audience | Other academic audiences (collaborators, peers etc.) |
Results and Impact | academics said they would incorporate metabolomics into their future experiments See above |
Year(s) Of Engagement Activity | 2014 |
Description | Pint of science |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | Talked about the research behind the debate about whether it is increased carbohydrate or saturated fat intake that is driving the obesity and type 2 diabetes epidemics. |
Year(s) Of Engagement Activity | 2017 |
Description | Poster presentation at Experimental Biology 2015 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | One of the PhD students attended Experimental Biology and presented a poster entitled "Effects of green tea and coffee polyphenols on cardiometabolic function in women with Polycystic Ovary Syndrome." Experimental Biology Boston, USA, 28 March-1 April 2015. |
Year(s) Of Engagement Activity | 2015 |
Description | Sardinian summer school: Metabolomics and more. |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | Sardinian summer school to spread the use of tools in metabolomics and lipidomics. |
Year(s) Of Engagement Activity | 2017 |
Description | Science Week cambridge 2016 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | : volunteering on 13th March 2016 Cambridge science festival HNR stand: Blood, Fat & the Future |
Year(s) Of Engagement Activity | 2016 |
Description | Sugar, Fat and the Daily Mail Headlines |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | JLG spoke at the 'Skeptics in the Pub' event on 26th May. The video is on YouTube should anyone want to view it! |
Year(s) Of Engagement Activity | 2015 |
Description | Talk on metabolomics at Bedford School |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | Gave a talk on metabolomics and systems biology to the biology club at Bedford school. |
Year(s) Of Engagement Activity | 2015 |
Description | West African Centre for cell Biology of Infectious Pathogens College of Basic and Applied Sciences, Ghana Research Conference 2017 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Took part in a 3 day conference/workshop to discuss advances in Biology that could be applied within Western Africa to treat human disease. |
Year(s) Of Engagement Activity | 2017 |
Description | Work experience for two school boys |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Schools |
Results and Impact | Work experience for two school boys: two school boys spent a week in my lab following members around to get some experience of what its like being a scientist. |
Year(s) Of Engagement Activity | 2016 |