Genomic Disorders and Cognitive Development

Lead Research Organisation: University of Cambridge
Department Name: UNLISTED

Abstract

About 1 in 100 people worldwide has intellectual disability (ID), meaning that they have significant lifelong difficulties with learning, communication and independent living skills. ID often occurs alongside other physical and mental health difficulties, meaning that people with ID require high levels of support and often have poor quality of life. Currently the support that can be provided is mainly reactive and symptom-focused - tackling problems as and when they arise. This is because, until recently, we did not know the cause of ID for the majority of people, so it was not possible to predict problems at an earlier stage and provide more effective support tailored to the cause of each person’s condition.
This situation is now changing fast. New genetic testing technologies mean that it is possible to identify a specific cause in more than half of people with ID. Testing is available within the NHS, and in many global health settings. Genetic diagnosis provides new opportunities to understand each person’s ID, and use this knowledge to improve physical and mental health. To achieve this, our research aims to bridge the gaps between the molecular cause of ID and the lifelong cognitive and mental health difficulties experienced by each person.

Technical Summary

The goal of this programme is to integrate genomic medicine with cognitive neuroscience to improve our understanding of neurodevelopmental disorders, and change long-term mental health outcomes for affected individuals and their families. Toward this goal, our objectives are (1) to map the neurodevelopmental correlates of genomic variation, (2) to discover the cognitive and neural mechanisms linking genomic variation to symptoms and impairments, and (3) to investigate how genomic disorders interact with social context to influence well-being.
Each genomic disorder is extremely rare – our strategy is to investigate groups of genomic disorders defined by convergent impact on physiological processes (gene functional networks). One gene functional network which is a particular focus of the programme is synaptic vesicle cycling disorders, including Synaptotagmin 1-associated and STXBP1-associated neurodevelopmental disorders. Other current projects focus on chromatinopathy disorders and Wnt-signalling disorders.

Clinical presentations of genomic disorders within each functional network are complex and variable between individuals and within individuals over time. To understand this variability, we apply a transdiagnostic framework to investigate dimensional impairments and underlying cognitive and neural systems. To achieve this we use a variety of human cognitive neuroscience methods – behavioural questionnaires, interviews and structured observations; standardised neuropsychological assessments; bespoke cognitive tests; structural and functional neuroimaging via MRI; neurophysiology via MEG and EEG. We also analyse big datasets enabling larger-scale analyses of genotype-phenotype relationships.

We engage in interdisciplinary collaborations with functional biologists to link molecular and cellular mechanisms to patients’ neurobiology and symptoms. To achieve clinical relevance we integrate social and biological understanding of mental health - we work closely with psychologists to connect neurobiology and cognition to lived experience and relationships.

Our translational goal is to develop 4P (participatory, personalised, predictive, preventive) medicine strategies that will improve mental health and quality of life for individuals with neurodevelopmental genomic disorders and their families.

Publications

10 25 50
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Baker K (2023) Desert Island Papers. in Brain and neuroscience advances

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Brkic D (2022) [Formula: see text]FarmApp: a new assessment of cognitive control and memory for children and young people with neurodevelopmental difficulties. in Child neuropsychology : a journal on normal and abnormal development in childhood and adolescence

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Melland H (2022) Expanding the genotype and phenotype spectrum of SYT1-associated neurodevelopmental disorder. in Genetics in medicine : official journal of the American College of Medical Genetics

Related Projects

Project Reference Relationship Related To Start End Award Value
MC_UU_00030/1 31/03/2022 30/03/2027 £2,366,000
MC_UU_00030/2 Transfer MC_UU_00030/1 31/03/2022 30/03/2027 £2,141,000
MC_UU_00030/3 Transfer MC_UU_00030/2 31/03/2022 30/03/2027 £1,964,000
MC_UU_00030/4 Transfer MC_UU_00030/3 31/03/2022 30/03/2027 £2,535,000
MC_UU_00030/5 Transfer MC_UU_00030/4 31/03/2022 30/03/2027 £2,771,000
MC_UU_00030/6 Transfer MC_UU_00030/5 31/03/2022 30/03/2027 £2,242,000
MC_UU_00030/7 Transfer MC_UU_00030/6 31/03/2022 30/03/2027 £1,219,000
MC_UU_00030/8 Transfer MC_UU_00030/7 31/03/2022 30/03/2027 £2,464,000
MC_UU_00030/9 Transfer MC_UU_00030/8 31/03/2022 30/03/2027 £2,753,000
MC_UU_00030/10 Transfer MC_UU_00030/9 31/03/2022 30/03/2027 £1,898,000
MC_UU_00030/11 Transfer MC_UU_00030/10 31/03/2022 30/03/2027 £2,148,000
MC_UU_00030/12 Transfer MC_UU_00030/11 14/10/2021 30/03/2027 £1,375,000
MC_UU_00030/13 Transfer MC_UU_00030/12 01/11/2021 30/03/2027 £1,261,000
MC_UU_00030/14 Transfer MC_UU_00030/13 31/03/2022 30/03/2027 £1,238,000
MC_UU_00030/15 Transfer MC_UU_00030/14 31/03/2022 30/03/2027 £2,102,000
 
Title ART-TRAnslations collaboration 
Description Collaborated with visual artist Donna McLuskie within ART-TRAnslations project sponsored by LifeArc and co-ordinated by CamRare. We produced a work of art inspired by rare disease research. 
Type Of Art Artwork 
Year Produced 2024 
Impact Artwork displayed in several high profile settings during 2024, together with information about our research and its relevance to the piece. 
 
Description ERI National Research Collaborative steering group membership
Geographic Reach National 
Policy Influence Type Contribution to a national consultation/review
URL https://epilepsy-institute.org.uk/
 
Description ERUK SAC membership
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
URL https://epilepsyresearch.org.uk/our-research/research-strategy/
 
Description IRDIC interdisciplinary scientific committee
Geographic Reach Multiple continents/international 
Policy Influence Type Participation in a guidance/advisory committee
URL https://irdirc.org/activities/task-forces/
 
Description Muir Maxwell Epilepsy Centre keynote
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
 
Description UCL MSc in Developmental Neuropsychology
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
Impact training in toolkit for integrating genetics into research and practice
 
Description Access to Expertise, within Translational Partnership Award, administered by Cambridge Academy of Therapeutic Science
Amount £14,000 (GBP)
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 12/2022 
End 09/2023
 
Description Cambridge Biomedical Research Centre integrative genomics theme
Amount £160,000 (GBP)
Organisation National Institute for Health Research 
Sector Public
Country United Kingdom
Start 09/2022 
End 09/2027
 
Description Cambridge Biomedical Research Centre mental health theme
Amount £14,740 (GBP)
Organisation National Institute for Health Research 
Sector Public
Country United Kingdom
Start 09/2022 
End 09/2027
 
Description Gates Cambridge PhD Scholar
Amount £99,526 (GBP)
Organisation Gates Cambridge Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2023 
End 09/2025
 
Title FarmApp 
Description This cross-disciplinary project combines expertise in the genetic basis of intellectual disability and characterizing cognition and behaviour in childhood. The aim is to use standard behavioural measurements and computerised testing methods to assess underlying cognitive mechanisms in children with intellectual disability of known genetic origins. A unique feature is long-term data collection via remote data upload to assess progress in cognitive performance over weeks. 
Type Of Material Physiological assessment or outcome measure 
Year Produced 2020 
Provided To Others? Yes  
Impact The method and new tool has been piloted in a cohort of children with ID. Initial study of feasability, validity and utility is available as a preprint and now in press at Child Neuropsychology. We are working toward making the tool accessible for other researchers. 
URL https://ouncetech.co.uk/projects/?project-309
 
Title BINGO cohort behavioural dataset 
Description We have collated medical histories together with standardised questionnaires for >250 individuals with neurodevelopmental disorders of known genetic origin 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? No  
Impact Analyses of the dataset contribute to the post-diagnostic evidence base for neurogenetic disorders, and stimulate discovery science and translational initiatives 
URL https://www.mrc-cbu.cam.ac.uk/bingo/
 
Description 100,000 Genomes Project 
Organisation Genomics England
Country United Kingdom 
Sector Public 
PI Contribution Via membership of the Neurology GECip, our programme has conducted two analyses of 100K data. Analyses were carried out by two MPhil in Genomic MEdicine students, both of whom obtained distinctions for their work within this collaboration. Both projects are currently being written up for publication.
Collaborator Contribution Genomics England generated the hugely valuable Rare Disorders cohort, with whole genome sequencing and HPO annotations.
Impact MPhil thesis: Analysis of Human Phenotype Ontology (HPO) Terminologies in Synaptic Vesicle Cycling (SVC) Disorders. Sokanha Kong. Multidisciplinary - genomic medicine, clinical neuroscience. MPhil thesis: The Genomics of Cerebral Visual Impairment. Emogene Shaw. Multidisciplinary - genomic medicine, ophthalmology, clinical neuroscience.
Start Year 2020
 
Description COIN project 
Organisation King's College London
Country United Kingdom 
Sector Academic/University 
PI Contribution I am co-investigator on a project led by Charlotte Tye to investigate the impact of the COVID19 impact on individuals with rare neurogenetic disorders and their families. Funded by a project grant from Baily Thomas Charitable Trust
Collaborator Contribution Involvement in project design, funding applications, methods development, data analysis and outputs.
Impact none to date
Start Year 2020
 
Description Decipher and DDD 
Organisation The Wellcome Trust Sanger Institute
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Phenotyping investigations of patients diagnosed within the DDD project Analysis of Decipher cohort phenotyping data
Collaborator Contribution Anonymised patient phenotyping and genomic data
Impact STXBP1 complementary analysis project - Suri et al 2017 STXBP1 phenotyping paper in preparation
Start Year 2013
 
Description IMAGINE parents 
Organisation IMAGINE ID
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Collaborative access to IMAGINE dataset. Concepts, study design, data analysis, manuscript preparation
Collaborator Contribution Conceptual and statistical expertise, manuscript preparation
Impact Paper in preparation
Start Year 2018
 
Description IMAGINE parents 
Organisation University of Birmingham
Department School of Psychology Birmingham
Country United Kingdom 
Sector Academic/University 
PI Contribution Collaborative access to IMAGINE dataset. Concepts, study design, data analysis, manuscript preparation
Collaborator Contribution Conceptual and statistical expertise, manuscript preparation
Impact Paper in preparation
Start Year 2018
 
Description IMAGINE parents 
Organisation University of Cambridge
Department Centre for Family Research
Country United Kingdom 
Sector Academic/University 
PI Contribution Collaborative access to IMAGINE dataset. Concepts, study design, data analysis, manuscript preparation
Collaborator Contribution Conceptual and statistical expertise, manuscript preparation
Impact Paper in preparation
Start Year 2018
 
Description SVC iPSC and organoid pilot project 
Organisation Wellcome Trust
Department Wellcome - MRC Cambridge Stem Cell Institute
Country United Kingdom 
Sector Academic/University 
PI Contribution We are contributing information about SYT1 genomic variants within the SVC cohort. We are also contributing the time and expertise of Dr Tess Smith (post-doctoral research associate) who is carrying out the experimental work within this collaboration. We are also purchasing CRISPR-edited cell lines for preliminary experiments.
Collaborator Contribution Laboratory facilites and materials
Impact Preliminary work in progress
Start Year 2023
 
Description Sarah Gordon SVC physiology Florey Institute 
Organisation Florey Institute of Neuroscience and Mental Health
Country Australia 
Sector Academic/University 
PI Contribution We contribute clinical phenotyping and genomic variant information. Gordon and team carry out in vitro functional studies. We integrate this information to characterise the SVC disorders spectrum and discover mechanisms contributing to symptoms and symptom variation. Now funded via Sparks/GOSH award (PI Baker, Co-Pi Gordon) and NHMRC award (PI Gordon, co-PI Baker)
Collaborator Contribution Functional studies of SVC neurodevelopmental disorder variants
Impact Baker, Gordon et al JCI (2015) Baker, Gordon et al Brain (2018)
Start Year 2013
 
Description Synapse Centre 
Organisation East Suffolk and North Essex NHS Foundation Trust
Country United Kingdom 
Sector Hospitals 
PI Contribution I have contributed to discussions about the goals and discussions about this new centre. I have delivered a lecture to the Centre. I have submitted one funding application connected to the Centre, and intend to develop further links and concrete project proposals over the next year.
Collaborator Contribution The collaboration is led by Dr Ben Marlow and colleagues, who have spearheaded a vision for a translational research centre for East of England.
Impact Interdisciplinary research, linked to a multidisciplinary neurodisability service.
Start Year 2020
 
Description BINGO website rebuild 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Patients, carers and/or patient groups
Results and Impact We have restructured and rewritten the content for the BINGO project website, including clear description of research project, summaries of previous publications and sign-posting to support organisations
Year(s) Of Engagement Activity 2023,2024
URL https://www.mrc-cbu.cam.ac.uk/bingo/
 
Description BNA Festival of Neuroscience - symposium organising 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact Organised and chaired symposium on synaptic developmental disorders
Year(s) Of Engagement Activity 2023
URL https://meetings.bna.org.uk/bna2023/prog/programme-day/synaptic-neurodevelopmental-disorders-genes-c...
 
Description Baker Gordon Syndrome Foundation website 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Patients, carers and/or patient groups
Results and Impact Members of our group have produced a research digest, animation and other content for a new family foundation website: https://www.bagosfoundation.org/
Year(s) Of Engagement Activity 2024
URL https://www.bagosfoundation.org/
 
Description CALM practitioners workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact I gave a genetics talk within the CALM end-of-study practitioners workshop. Received feedback on presentation which significantly contributed to preparation of publication
Year(s) Of Engagement Activity 2023
 
Description Cambridge Neuroscience Interdisciplinary Seminar - SVC disorders 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact Around 20 investigators and clinicians from across diverse Cambridge departments attended an online talk about SVC disorders. This stimulated new collaborations.
Year(s) Of Engagement Activity 2022
URL https://youtu.be/TcDw4L4ysGA
 
Description Cambridge Neuroscience seminar - organisational volunteering 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Postgraduate students
Results and Impact 2 team members (Josefine, Tess) played a significant support role for this annual event - Communication and engagement with practitioners, industry and academics to promote Cambridge Neuroscience as a member of the Steering Committee.
Year(s) Of Engagement Activity 2023
 
Description CureGRIN family conference 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Patients, carers and/or patient groups
Results and Impact Jess and Kate attended the Gri+Meet event held at UCL in March 2024. Jess gave a great presentation about her project within BINGO.
Year(s) Of Engagement Activity 2024
URL https://curegrin.org/
 
Description DDX3X International conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Patients, carers and/or patient groups
Results and Impact Jess Martin was invited to give a talk at this international event held in Paris.
Year(s) Of Engagement Activity 2023
URL https://ern-ithaca.eu/news/first-international-conference-on-ddx3x-syndrome-october-20/
 
Description ERUK Shape Network live 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact I contributed a lecture to an ERUK research training day for the SHAPE network. This included people with epilepsy and carers, who act as an advisory group for the funder.
Year(s) Of Engagement Activity 2022
URL https://www.youtube.com/watch?v=Dpo87f7QaBI
 
Description Pint of Science Cambridge 2023 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Presentation by Kate and Eema at Pint of Science on Rare Minds. Focused on SYT1 / SVC disorders
Year(s) Of Engagement Activity 2023
URL https://pintofscience.co.uk/event/rare-mind
 
Description Rare Disease Day 2024 patient-led research webinar 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact Kate gave a 10 minute talk and then participated in panel discussion. Feedback indicated high level of engagement and raising of awareness about mental health and rare conditions
Year(s) Of Engagement Activity 2024
URL https://www.rarediseaseday.org/event/rare-disease-day-patient-centred-research-webinar/
 
Description Rare Disease family day at Sanger 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Patients, carers and/or patient groups
Results and Impact Family day for participants on the Next Generation Children's project and other local families affected by rare disease
Year(s) Of Engagement Activity 2022
 
Description RareSummit 2023 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact Three group members (Kate, Carly, Sam) attended RareSummit at Sanger Wellcome Institute. We acted as volunteers during the day. Kate chaired questions for one session. Carly and Sam provided written summaries of one session for the post-event report
Year(s) Of Engagement Activity 2023
URL https://www.camraredisease.org/raresummit23/
 
Description Unique newsletter article 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Patients, carers and/or patient groups
Results and Impact article for Unique newsletter with update on BINGO project and sharing experiences of researchers and families who have taken part
Year(s) Of Engagement Activity 2024
URL https://rarechromo.org/
 
Description University of Cambridge Biological Sciences Open Day October 2023 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact Tess Smith - Communication and engagement panellist for a session on graduate programmes available across the Biological Sciences at the University.
Year(s) Of Engagement Activity 2023