cAMP phosphodiesterase-4: signalling complexes, regulation and potential therapeutic targets.

Lead Research Organisation: University of Glasgow
Department Name: College of Medical, Veterinary, Life Sci

Abstract

The death rate from respiratory diseases in the UK is twice the EU average and costs the NHS more than any other disease area. Chronic Obstructive Pulmonary Disease, the fourth leading cause of death in the world, causes around 26,000 deaths/year and asthma around 1500 deaths/yr in the UK. This debilitating illness is associated with lung damage caused by chronic inflammation due to the sustained activation of 'inflammatory' cells. Raising the levels of a substance called cAMP, inside these cells, can stop this. An effective way of doing this is to stop cAMP from being broken down by PDE4 enzymes. At the moment scientists have made inhibitor molecules that bind tightly to the 'mouth' on PDE4 where cAMP is digested, stopping it breaking down cAMP. However, a major problem using these as medicines are side-effects like nausea and vomiting.
It's now clear that there is a large family of PDE4 enzymes where only certain of these are found in cells causing inflammation and damage in lungs. We aim to identify the particular PDE4 enzymes that it is important to inhibit in order to stop damage and help repair lungs. Then we need to devise ways to inhibit these selectively, rather than all PDE4s, to produce medicines without side-effects. As all PDE4 enzymes have identical mouths for digesting cAMP we need to take a new approach to inhibit just the critical PDE4s. To do this we will exploit our discovery that individual PDE4s have unique 'postcodes' built into them. These post-codes allow particular PDE4s to be targeted to the right place inside cells for them to work properly. This happens because the individual postcode is recognised by distinct anchor proteins placed at strategically important sites in cells. This targeting to exactly the right place is essential for particular PDE4s to do their job. We aim to identify anchor proteins and relevant postcodes for the PDE4s that we need to inhibit to stop inflammation and lung damage. Then, when we've done this, we will design molecules that stop the postcode of critical PDE4s from being recognised by their anchors. These molecules will prevent PDE4s from going to the place in the cell where they help inflammation to occur. These should provide a new way of making medicines to treat COPD that we anticipate will not suffer side effects caused by medicines currently being developed.

Technical Summary

cAMP is a pivotal second messenger able to exert a panoply of cell type specific effects. A multigene family of phosphodiesterases (PDEs) provide the sole means for degrading cAMP and are thus poised to play a key regulatory role in cells. Highly specialised regulatory properties, coupled with cell specific patterns of expression, provide each cell type with a sophisticated and unique means of regulating intracellular cAMP. This diversity offers potential for developing highly specific therapeutic agents. There is great interest in developing PDE4 family selective inhibitors for treatment of Chronic Obstructive Pulmonary Disease (COPD). However, the deployment of PDE4 inhibitors as therapeutics has been limited by side effects, such as nausea. It is now appreciated that PDE4 activity is attributable to a large family of isoforms. This has prompted the notion that selective inhibition of particular PDE4 isoforms may maximise therapeutic benefit whilst minimising side effects. Different cell types have unique complements of PDE4 isoforms and recent technological advances place us now at a stage where we can determine how individual PDE4 isoforms sculpt cAMP gradients in cells to underpin compartmentalised cAMP signalling and control specific cellular processes. Inherent in this is the concept pioneered by our laboratory that the intracellular targeting of individual types of PDE4 isoforms to specific signalling complexes is fundamental to their functioning. Thus, not only may altered expression, targeting and regulation of individual isoforms contribute to various pathological conditions but disrupting the intracellular targeting of specific PDE4 isoforms in cells may provide a novel means of generating therapeutics aimed at disease-related PDE4 isoforms while minimising side-effects. As a route to identifying novel therapeutic targets we propose to define the functional role, modes of intracellular targeting and and regulation of PDE4 isoforms associated with COPD.

Planned Impact

Asthma causes around 74,000 emergency hospital admissions and 1500 deaths in the UK each year. However, Chronic Obstructive Pulmonary Disease has now overtaken asthma as a drain on healthcare resources. It is the fourth leading cause of death in the world, with numbers predicted to increase. In the UK, COPD causes around 30,000 deaths/year and is projected to become the third most common cause of death by 2020. It causes 300,000 emergency hospital admissions every year, representing >10% of all acute admissions. It currently costs the NHS £500 million in direct costs and almost £1 billion a year with indirect costs included. COPD causes working difficulties, with loss of >20 million working days/yr in the UK. Whilst there have been improvements in the management of this difficult disease, there is a pressing need for novel therapies to combat it, particularly as no existing treatment appears to reduce disease progression.
While the PDE4 selective inhibitor, Roflumilast has recently been approved for use in Europe and the USA, its path to approval has been problematic, reflecting difficulties due to side effects that limit the therapeutic window. Nevertheless, the proven anti-inflammatory action of PDE4 inhibitors demonstrates the functional importance of PDE4 isoforms. The side-effect issue probably relates to the fact that 4 PDE4 genes encode >20 isoforms with similar catalytic units such that active-site directed inhibitors, like Roflumilast, inhibit all PDE4 species to a greater or lesser extent, rather than preferentially targeting those associated with efficacy in ameliorating COPD. Different cell types have unique complements of PDE4 isoforms and recent technological advances place us now at a stage where we can determine how individual PDE4 isoforms sculpt cAMP gradients in cells to underpin compartmentalised cAMP signalling and control specific cellular processes. Inherent in this is the concept pioneered by our laboratory that the intracellular targeting of individual types of PDE4 isoforms to specific signalling complexes is fundamental to their functioning. Thus, not only may altered expression, targeting & regulation of individual isoforms contribute to various pathological conditions, but disrupting the intracellular targeting of specific PDE4 isoforms in cells may provide a novel means of generating therapeutics aimed at disease-related PDE4 isoforms while minimising side-effects. We are thus uniquely placed to build on and exploit our expertise in order to translate this into identifying novel therapeutic targets and approaches.
The general public will benefit. Collaborations such as the one proposed with the Akassoglou lab, are pivotal in future research development. They increase the UK knowledge base and therefore scientific output, student teaching and postdoctoral training, which are are substantial contributors to national wealth. In addition, such collaborations reduce costs through efficient sharing of intellectual and technical resources.
All materials generated as part of this proposal will be made freely available to other members of the scientific community.
Clinicians and patients will benefit indirectly from this work because the more we understand about the mechanisms underlying COPD, the nearer we become to an effective treatment.
Additionally, the researchers employed on this grant will acquire experience investigations into complex signalling modules and pathways and the multifaceted dynamic processes they involve. With this novel combination of competences the researchers will become competitive in the biomedical research field with an original profile. By working under the supervision of top scientists in their field and with authors of numerous highly quoted publications, they will learn how to conceive solid research projects and how to present scientific results in a clear and convincing form, with the perspective of publishing their work in high ranking peer-reviewed journals.

Publications

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Bachmann VA (2016) Gpr161 anchoring of PKA consolidates GPCR and cAMP signaling. in Proceedings of the National Academy of Sciences of the United States of America

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Cameron RT (2014) Arrestin regulation of small GTPases. in Handbook of experimental pharmacology

 
Description BHF PhD Studentship
Amount £100,000 (GBP)
Organisation British Heart Foundation (BHF) 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2014 
End 09/2017
 
Description Industrial placement PhD Scheme
Amount £80,000 (GBP)
Organisation AstraZeneca 
Sector Private
Country United Kingdom
Start 10/2013 
End 09/2017
 
Description Proof of Concept
Amount £583,000 (GBP)
Funding ID PS7305CA23 
Organisation Scottish Enterprise 
Sector Public
Country United Kingdom
Start 08/2013 
End 07/2015
 
Description Small molecules targeting the PDE4A4-p75NTR interaction, a novel target for fibrotic diseases.
Amount £18,500 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 06/2015 
End 09/2015
 
Description Translational Award
Amount £142,585 (GBP)
Funding ID RG2610/12/14 
Organisation Heart Research UK 
Sector Charity/Non Profit
Country United Kingdom
Start 05/2012 
End 04/2014
 
Description Wellcome PhD studentship
Amount £73,600 (GBP)
Funding ID 096978/Z/11/Z 
Organisation Wellcome Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 10/2012 
End 09/2015
 
Title Disruptor peptides 
Description High affinity peptides designed to disrupt specified protein-protein interactions 
Type Of Material Technology assay or reagent 
Year Produced 2012 
Provided To Others? Yes  
Impact Scientific publications (over 20) from my group and others. 
URL http://www.ncbi.nlm.nih.gov/pubmed/23495691
 
Title PDE4 isoform specific antibodies 
Description Antibodies against splice variants of PDE4 
Type Of Material Technology assay or reagent 
Year Produced 2012 
Provided To Others? Yes  
Impact Publications 
 
Description Chemical informatics uncovers a new role for moexipril as a novel inhibitor of cAMP phosphodiesterase-4 (PDE4). 
Organisation University of California, San Francisco
Country United States 
Sector Academic/University 
PI Contribution Expertise in PDE4
Collaborator Contribution Expertise in Chemical informatics
Impact research papers
Start Year 2012
 
Description Epidermal Growth Factor Receptor substrate 8 (Eps8) controls Src/FAK-dependent phenotypes in squamous carcinoma cells. 
Organisation Medical Research Council (MRC)
Department MRC Human Genetics Unit
Country United Kingdom 
Sector Academic/University 
PI Contribution Expertise in peptide array
Collaborator Contribution Cell models, expertise in cancer research
Impact Research papers
Start Year 2008
 
Description Heterozygous mutations in cyclic AMP phosphodiesterase-4D (PDE4D) and protein kinase A (PKA) provide new insights into the molecular pathology of acrodysostosis. 
Organisation Samsung
Department Samsung Advanced Institute of Technology
Country Korea, Republic of 
Sector Private 
PI Contribution Expertise in PDE4 and cAMP
Collaborator Contribution Human disease model
Impact Research publication
Start Year 2013
 
Description Missense mutation in DISC1 C-terminal coiled-coil has GSK3beta signaling and sex-dependent behavioral effects in mice 
Organisation University of Leeds
Department School of Biomedical Sciences
Country United Kingdom 
Sector Academic/University 
PI Contribution PDE4 biology research
Collaborator Contribution Animal model of behaviour
Impact publication
Start Year 2014
 
Description Phosphodiesterase 4 interacts with the 5-HT4(b) receptor to regulate cAMP signaling. 
Organisation University of Ghent
Country Belgium 
Sector Academic/University 
PI Contribution Expertise on PDE4.
Collaborator Contribution Expertise on 5-HT4(b) receptor signalling
Impact Scientific publication Multi-disciplinary. Bochemistry, cell biology, molecular biology, pharmacology
Start Year 2013
 
Description Real-time probing of beta-amyloid self-assembly and inhibition using fluorescence self-quenching between neighbouring dyes 
Organisation University of St Andrews
Country United Kingdom 
Sector Academic/University 
PI Contribution Expertise on HSP20 and PDE4
Collaborator Contribution Biophysical assay expertise
Impact 2 scientific publications
Start Year 2012
 
Description Specific interactions between Epac1, beta-arrestin2 and PDE4D5 regulate beta-adrenergic receptor subtype differential effects on cardiac hypertrophic signaling 
Organisation National Institute of Health and Medical Research (INSERM)
Department Institute of Metabolic and Cardiovascular Disease (I2MC)
Country France 
Sector Public 
PI Contribution expertise in PDE4 and peptide array
Collaborator Contribution Cell models of cardiac disease
Impact research paper
Start Year 2012
 
Description pecific Inhibition of Phosphodiesterase-4B Results in Anxiolysis and Facilitates Memory Acquisition 
Organisation University of British Columbia
Department Department of Psychiatry
Country Canada 
Sector Academic/University 
PI Contribution Work on PDE4 biochemistry for a paper
Collaborator Contribution Work on mouse model of Schizophrenia
Impact publication
Start Year 2015
 
Title BINDING INHIBITORS OF THE BETA.TRANSDUCIN REPEAT - CONTAINING PROTEIN 
Description The present invention relates to compounds which bind to Beta Trans-ducin repeat-containing protein (PTrCP), and modulate the activity of l3TrCP. In particular, the invention relates to compounds which demonstrate optimised binding to PTrCP. The invention also relates to pharmaceutical compositions comprising such compounds and the use of such compounds as medicaments, specifically for the treatment of disorders associated with aberrant protein degradation, such as cancer. The preferred binding inhibitors are peptides derived from the motive DSGXXS, e.g. DEGFWE, DDGFWD and Succinyl-EGFWE. 
IP Reference WO2013001297 
Protection Patent granted
Year Protection Granted 2013
Licensed No
Impact Spinout company formed around the discovery
 
Title MATERIALS AND METHODS FOR INCREASING HSP20 ACTIVITY 
Description The present invention provides methods and materials for use in increasing HSP20 activation in a biological system, for example by increasing phosphorylation of Ser16 of HSP20. In one aspect, the invention provides a method for increasing HSP20 activation in a biological system, comprising contacting the system with an antagonist capable of inhibiting PDE4 binding to HSP20, the antagonist comprising or consisting essentially of a fragment of PDE4 or an analogue thereof. In a further aspect the invention provides a method of screening for an agent able to increase activation of HSP20. A preferred antagonist has a C-termina! lysine residue. 
IP Reference WO2012046008 
Protection Patent granted
Year Protection Granted 2012
Licensed No
Impact Proof of Concept award from Scottish Enterprise
 
Company Name Sannox Therapeutics 
Description Biotech company 
Year Established 2013 
Impact Compounds under development for cardiovascular disease and cancer
Website https://www.companiesintheuk.co.uk/ltd/sannox-therapeutics
 
Description Conference organisation (Peptide Array 2013) in conjunction with European Peptide Society 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Conference sparked discussion on future of peptide research

General interest in peptide array technique massively increased
Year(s) Of Engagement Activity 2013
URL http://www.eurpepsoc.com/ai1ec_event/peptide-arrays-2013/?instance_id=
 
Description Expert talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Type Of Presentation Keynote/Invited Speaker
Geographic Reach National
Primary Audience Postgraduate students
Results and Impact Invited speaker at the DZHK (German Centre for CardioVascular Research) workshop on "Cardiac second messenger microdomains", University Medical Center Gottingen, Germany (Sept 2013).

Open question/answer session and 2 hour meeting giving careers advice to PhD students from all over Germany
Year(s) Of Engagement Activity 2013
 
Description Gordon Research seminar 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? Yes
Geographic Reach International
Primary Audience Participants in your research and patient groups
Results and Impact The purpose was to allow junior scientists to run their own conference. Thi was successful as the student sparked lively discussions aboout the future of our field

The focus of this meeting is to highlight new and innovative techniques and models that are advancing our understanding of PDEs and cyclic nucleotide signaling. These include, but are not limited to: novel biosensors, molecular modeling tools and unique in vivo and in vitro models that aid in investigating PDEs and their signaling partners. The meeting will also feature a mentorship session which will explore the challenges and changing landscape of research today, and the opportunities that exist to bridge academic and industry research.
Year(s) Of Engagement Activity 2014
URL http://www.grc.org/programs.aspx?year=2014&program=grs_cycnuc
 
Description Hosted 6th year school student for advanced honours project 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? Yes
Geographic Reach Regional
Primary Audience Schools
Results and Impact Student applied for University place in Biological Sciences

Student achieved place at Strathclyde University
Year(s) Of Engagement Activity 2014
 
Description Images of Science (Glasgow Science Centre) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? Yes
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Contact with public has attracted several questions

Increasing public awareness of research into heart disease
Year(s) Of Engagement Activity 2012,2013,2014
 
Description Invited seminar at Gordon Research Conference on Cyclic nucleotides 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Participants in your research and patient groups
Results and Impact informed PDE4 field of my latest advanced which raised many questions

Invited to be vice chair of next GRC on cyclic nucleotides inm 2016
Year(s) Of Engagement Activity 2014
URL http://www.grc.org/programs.aspx?year=2014&program=cycnuc
 
Description Media coverage of scientific paper 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact article in Scotsman and Scottish Daily Mail and Times
Year(s) Of Engagement Activity 2016
 
Description Plenary Lecture 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Type Of Presentation Keynote/Invited Speaker
Geographic Reach International
Primary Audience Health professionals
Results and Impact Plenary opening talk of Annual meeting of Italian Society of Dermatology, Surgical, Esthetical and Sexually Transmitted diseases in Rome (Nov 2012, 1000 participants)

Open question and answer session
Year(s) Of Engagement Activity 2012
 
Description Radio interview 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Radio interview on Radio Clyde about the paper on"Adipocyte-specific p75 neurotrophin receptor regulates energy balance in obesity"
Year(s) Of Engagement Activity 2016
 
Description School visit (Glengarnock 2013) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Type Of Presentation Workshop Facilitator
Geographic Reach Local
Primary Audience Schools
Results and Impact 30 pupils attended career talk which lead to discussion and open questions

I have had quesations re career advice from the school and pupils
Year(s) Of Engagement Activity 2013
 
Description Technology talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Type Of Presentation Keynote/Invited Speaker
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact )Opening Keynote talk and conference chair at the 2nd UK xCELLigence users meeting, Birmingham (june 2013)

Introduction of academics to new technology
Year(s) Of Engagement Activity 2013
 
Description Work experience for school children 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? Yes
Geographic Reach Regional
Primary Audience Schools
Results and Impact The school children involved are now seriously considering careers in Biological Sciences

School children more interested in science and more likely to go for University Qualification in Sciences
Year(s) Of Engagement Activity 2013,2014