Transcriptional regulation of the Notch and Vegf signalling pathways during angiogenesis and arterio-venous differentiation

Lead Research Organisation: University of Oxford
Department Name: Ludwig Institute for Cancer Research

Abstract

The correct formation of blood vessels is essential for human development and health. However, mistakes in vessel growth or formation occur in a large variety of diseases. For example, the development of solid tumours involves the growth of new blood vessels into the tumour to provide the required nutrients, and a number of eye diseases are caused by faulty blood vessel growth in the retina. Consequently, it is very important that we increase our understanding of how the formation and growth of blood vessels is controlled.

The growth of blood vessels requires the precise regulation of a large number of genes, and it is this regulation that our laboratory investigates. In particular, we are interested in how genes are specifically switched on in blood vessels but remain off in other tissues. This MRC project will investigate the regulation of a group of related genes that make up the Notch and VEGF signalling pathways in blood vessels. These pathways are different, but related, ways in which blood vessels receive information from their surroundings suggesting that a new blood vessel needs to be formed, and the type of vessel that is needed. For example, if a tissue is short of oxygen and therefore wants more blood vessels, it will utilise these two pathways (and others) to signal this need. The two processes we are investigating are angiogenesis, which is the process by which new vessels first form, and how arteries and veins mature.

The benefits stemming from this work will include a massive increase in our understanding of how the process of signalling to form new vessels is controlled, and how the processes of vessel growth and differentiation are regulated. It is anticipated that the results will help drive forward the development of therapies to prevent, alter or encourage vascular growth in many different diseases, including cancer, eye disease, inflammatory and autoimmune disorders, and heart disease.

Technical Summary

The correct formation of blood vessels is essential for embryonic growth and development, but this process can also be co-opted by a number of pathological conditions. The Notch and VEGF signalling pathways play a significant role in vessel differentiation and angiogenic vascular growth, and are consequently attractive candidates for anti-angiogenesis therapy. However, resistance to VEGF inhibitors, in part mediated by the Notch pathway, is emerging as a major clinical limitation to current anti-angiogenic therapies. Consequently, in order to develop effective, targeted interventions to pathological vessel growth, it is increasingly important that we understand the biology of these two pathways in endothelial cells. The aim of this proposal is to understand the regulatory networks that control the transcription of genes within the Notch and VEGF pathways during vessel growth via the systematic identification, validation and characterization of regulatory enhancer elements. These will be identified in silico, validated in transgenic zebrafish and characterized using targeted single-copy transgenic mouse models. Key regulatory factors will be identified through a combination of validated phylogenic footprints, mutations of cis-motifs and identification of binding factors e.g. with SILAC. The role of novel vascular factors will be further investigated via gene knock-down or knock-out strategies in both in vivo and in vitro models. In conclusion, this investigation will delineate the entire transcriptional pathway regulating the Notch and VEGF pathways during angiogenic sprouting and vascular differentiation, and identify key transcription factors involved in these processes.

Planned Impact

The proposed project seeks to delineate the entire transcriptional pathway regulating angiogenic sprouting and vascular differentiation, and to identify the transcription factors involved in these processes. It is anticipated that this research will provide key insights regarding the manner in which components of the Notch and VEGF vascular signalling pathways interact with themselves, each other, and other angiogenic pathways such as TGF-beta and Wnt signalling, during both physiological and pathological vessel growth. Resistance to VEGF inhibitors, in part mediated by the Notch pathway, is emerging as a major clinical limitation to current anti-angiogenic therapies. Consequently, although this proposal covers basic science research, the thorough understanding of how these two major pathways are transcriptionally regulated during vessel growth that will be gained is anticipated to have long-term, important implications for both the design of new anti-angiogenic therapies, and the treatment regimes utilized with current therapeutics.

Publications

10 25 50
 
Description Academic Head Athena Swan
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Membership of a guideline committee
 
Description Athena
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Membership of a guideline committee
 
Description Ethical review
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Membership of a guideline committee
 
Description public engagement
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
 
Description BHF Centre of Research Excellence, Oxford Pump Priming Grant
Amount £9,000 (GBP)
Funding ID RE/13/1/30181 
Organisation University of Oxford 
Sector Academic/University
Country United Kingdom
Start 07/2015 
End 07/2016
 
Description BHF Centre of Research Excellence, Oxford Pump Priming Grant
Amount £13,000 (GBP)
Funding ID RE/13/1/30181 
Organisation University of Oxford 
Sector Academic/University
Country United Kingdom
Start 12/2015 
End 12/2016
 
Description Determining the regulatory pathways controlling venous and lymphatic vessel growth and their role during heart development and regeneration
Amount £1,150,716 (GBP)
Funding ID FS/17/35/32929 
Organisation British Heart Foundation (BHF) 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2018 
End 12/2022
 
Description Fondation Leducq Transatlantic Network of Excellence
Amount $6,000,000 (USD)
Organisation The Leducq Foundation 
Sector Charity/Non Profit
Country France
Start 01/2019 
End 01/2024
 
Description Standard Proposal Scheme: Responsive Mode
Amount £518,153 (GBP)
Funding ID BB/L020238/1 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 06/2014 
End 06/2017
 
Description Travel Award -
Amount $500 (USD)
Organisation North American Vascular Biology Organization 
Sector Private
Country United States
Start 10/2014 
 
Description Uncovering novel regulators of angiogenesis
Amount £9,007 (GBP)
Organisation University of Oxford 
Department BHF Centre of Research Excellence
Sector Academic/University
Country United Kingdom
Start 11/2022 
End 11/2023
 
Description Uncovering novel regulators of coronary arterial differentiation
Amount £29,886 (GBP)
Organisation University of Oxford 
Department BHF Centre of Research Excellence
Sector Academic/University
Country United Kingdom
Start 04/2021 
End 04/2022
 
Description University of Oxford John Fell Fund
Amount £49,395 (GBP)
Organisation University of Oxford 
Sector Academic/University
Country United Kingdom
Start 08/2019 
End 01/2021
 
Title Dll4 enhancer - fish 
Description We have identified an enhancer that directs expression of any linked gene specifically to the arterial endothelial cells in fish. This has been made available to the field, allowing people to generate transgenic zebrafish expressing their gene of interest specifically in arteries. 
Type Of Material Model of mechanisms or symptoms - non-mammalian in vivo 
Year Produced 2012 
Provided To Others? Yes  
Impact Too early to tell 
 
Title Dll4 gfp fish 
Description We have used our arterial-specific enhancer to generate a transgenic zebrafish expressing GFP specifically in arteries, providing a mechanism to visualize arteries whilst the fish are still alive. 
Type Of Material Model of mechanisms or symptoms - non-mammalian in vivo 
Year Produced 2012 
Provided To Others? Yes  
Impact Paper published in eLife 2017 
 
Title Dll4in3 mouse 
Description Mouse model of Dll4-lacZ enhancer 
Type Of Material Model of mechanisms or symptoms - mammalian in vivo 
Year Produced 2013 
Provided To Others? Yes  
Impact Paper published in eLife 
 
Title coup-fish 
Description Zebrafish in which the venous endothelium is specifically expressing GFP 
Type Of Material Model of mechanisms or symptoms - non-mammalian in vivo 
Year Produced 2015 
Provided To Others? Yes  
Impact This vein specific GFP fish provides an invaluable resource to many research groups 
 
Title coup-plasmid 
Description Enhancer that specifically drives gene expression in veins 
Type Of Material Model of mechanisms or symptoms - non-mammalian in vivo 
Year Produced 2013 
Provided To Others? Yes  
Impact none yet 
 
Title dll4-cre 
Description Arterial and angiogenic specific Cre model 
Type Of Material Model of mechanisms or symptoms - mammalian in vivo 
Year Produced 2014 
Provided To Others? Yes  
Impact None yet 
 
Title hlx fish 
Description Transgenic zebrafish expressing GFP specifically in angiogenic sprouting cells 
Type Of Material Model of mechanisms or symptoms - non-mammalian in vivo 
Year Produced 2015 
Provided To Others? Yes  
Impact Paper in preparation 
 
Description Anna 
Organisation Imperial College London
Department Imperial College Trust
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Providing developmental biology expertise
Collaborator Contribution Mouse line
Impact None yet
Start Year 2013
 
Description George 
Organisation University of Liverpool
Department Department of Musculoskeletal Biology
Country United Kingdom 
Sector Academic/University 
PI Contribution We provide know-how in in-silico enhancer prediction, and generate Tol2-mediated zebrafish transgenics.
Collaborator Contribution George Bou-Gharios and his team at the Kennedy Institute (now part of University of Oxford) generate high-quality transgenic mice for us.
Impact We have two funded project grants utilizing data from this collaboration (MRC and BBSRC). We have three papers published as co-authors.
Start Year 2011
 
Description Holger 
Organisation Cancer Research UK
Department Cancer Research UK London Research Institute (LRI)
Country United Kingdom 
Sector Academic/University 
PI Contribution Identified novel transcriptional mechanism controlling key gene in angiogenic sprouting
Collaborator Contribution Expertise in multiple ex vivo, in vivo and in vitro assays to investigate angiogenic sprouting
Impact Paper published in Genes and Development
Start Year 2012
 
Description Janice 
Organisation University College London
Country United Kingdom 
Sector Academic/University 
PI Contribution Providing enhancer:reporter mice with delineated regulatory pathways
Collaborator Contribution Conducting hind-limb ischemia
Impact none yet
Start Year 2019
 
Description Mat 
Organisation University of Queensland
Country Australia 
Sector Academic/University 
PI Contribution We are providing mouse and zebrafish transgenic models to support Mat's work on Sox and Notch
Collaborator Contribution They have given us a chemical inhibitor of the Sox transcriptional pathway
Impact Published paper in eLife
Start Year 2014
 
Description Nicola 
Organisation University of Oxford
Department Department of Physiology, Anatomy and Genetics
Country United Kingdom 
Sector Academic/University 
PI Contribution Providing specific transgenic mice Providing knowledge of transcriptional regulators of different endothelial cells within the heart
Collaborator Contribution Conducting cardiac injury, harvesting tissue
Impact BHF project grant awarded (PG/16/34/32135) Collaborator on Oxbridge BHF Centre of Regenerative Medicine application in 2017 The results formed part of the preliminary data in my BHF Senior Research Fellowship application Jan 2017
Start Year 2015
 
Description Rui 
Organisation University of Oxford
Department Oxford Centre for Diabetes Endocrinology and Metabolism (OCDEM)
Country United Kingdom 
Sector Academic/University 
PI Contribution Transgenic fish with different types of endothelial cells labeled by GFP
Collaborator Contribution Expertise and assistance in ATAC-seq
Impact Funded pump-prime grant from BHF Oxford CRE Provided ATAC-seq database for future enhancer identification
Start Year 2015
 
Description mat2 
Organisation University of Queensland
Department Institute for Molecular Bioscience
Country Australia 
Sector Academic/University 
PI Contribution Mammalian Notch enhancer information, EMSA
Collaborator Contribution Zebrafish Notch enhancer information, CRISPR knockout of enhancer
Impact Published paper identifying regulatory pathway in arteries
Start Year 2015
 
Description Behind the headlines - Museum outreach 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact The Museum of Natural History in Oxford runs many activities to try and engage the public with scientific research, including their regular 'Super Science Saturdays' events. Last autumn, as part of a special themed Super Science Saturday called 'Behind The Headlines', a team of scientists from mine and Roger Patient's lab in the MRC Molecular Haematology Unit created a series of different activities to explain the science behind the headline: 'How tiny fish could hold the key to blood cancer treatment'. Over 2,500 visitors attended the event, which included numerous other activities. Approximately half of those in attendence were estimated to be school age
Year(s) Of Engagement Activity 2016
URL https://wimmblog.com/2017/02/06/the-science-behind-the-headlines/
 
Description Cheltenham 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? Yes
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Interactive games and displays stimulated discussion and improved understanding of what cancer is, and how to think about cancer risk.

Public were surprised by some of the information provided, improved there ability to understand science in the media.
Year(s) Of Engagement Activity 2014
URL http://www.ndm.ox.ac.uk/cheltenham-science-festival
 
Description MRC 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? Yes
Type Of Presentation Workshop Facilitator
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Over 2000 people attended over 6 hours, feedback was overwhelmingly positive, even though most people who attended admitting not being aware of the event prior to arrival.

around half of attendees (who filled in evaluation) admitted knowing nothing or very little about the MRC prior to attending this event, so it is hoped that we have increased local awareness of the MRC and the work it funds.
Year(s) Of Engagement Activity 2013
 
Description NDM open day 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact approximately 50 people attended this open day to learn about the activities of the Nuffield Department of Science. My staff ran a card game to inform people about cancer risk

We hope this resulted in an increased local awareness of our work.
Year(s) Of Engagement Activity 2013,2014
 
Description Open doors 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? Yes
Type Of Presentation Workshop Facilitator
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Approximately 50 members of the public attended this event, which ignited a interesting discussion about the relevance and importance of basic research in the war against cancer

Two people requested email correspondence.
Year(s) Of Engagement Activity 2013
 
Description Oxford science festival 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? Yes
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Stimulated questions, improved understanding, excited children about science

Public reported increased understanding of subject
Year(s) Of Engagement Activity 2014
URL http://www.ndm.ox.ac.uk/oxfordshire-science-festival
 
Description Women in Science 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Type Of Presentation Keynote/Invited Speaker
Geographic Reach National
Primary Audience Schools
Results and Impact Approximately 50 female comprehensive school students attended. Many questions afterwards, also I had a number of follow-up enquiries by email, and had one very keen student in my lab for two weeks for work experience

Many students reported that the talk had clarified the experience of women in science, good feedback was received and more good female science students stated that they would consider studying biology-based subjects at University.
Year(s) Of Engagement Activity 2013
 
Description cruk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? Yes
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Helped people understand what they were raising money for

Unable to assess
Year(s) Of Engagement Activity 2014
 
Description oxford science festival 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Participated in NDM presentation at festival, talked about research with public
Year(s) Of Engagement Activity 2015,2016
 
Description work experience 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Hosted 6th formers for work experience in our lab
Year(s) Of Engagement Activity 2015,2016