Role of Thrombospondins in interstitial Extracellular Matrix 3-Dimensional Organisation: Mechanisms and Functions

Lead Research Organisation: University of Bristol
Department Name: Biochemistry

Abstract

In our bodies, our skin is supple and our bones are rigid because of the properties of extracellular matrix (ECM) that surrounds the cells in each tissue. ECM is built up from the beginning of development as a suite of large proteins released by cells that bind with each other to form insoluble fibrils and networks. These structures are maintained throughout life, are repaired after injury, and can cause health problems if disrupted in disease. The physical and chemical properties of ECM inform cells whether to be stationary, move, or divide, and modulate the expression of genes. These signals enable cells to function properly throughout life but how the 3-dimensional organisation of ECM is set up and tuned is poorly understood. For all these reasons, research into principles of ECM organisation is important and necessary to identify new therapeutic targets and materials.
The most abundant proteins in ECM are collagens that form elongated fibrils. Many accessory proteins act to maintain the number, sizes, and packing of collagen fibrils, and how the fibrils interact with other ECM components. Accessory proteins are attractive as possible therapeutic targets because they are less abundant (so could be more easy to modulate with a small drug) and yet can act as "levers" to change ECM organisation. Our recent research identified that thrombospondin proteins (TSPs) are conserved with collagens and a few other ECM components throughout animals, from sponges to human. Because of this conservation we consider that the mechanism(s) by which TSPs bind into ECM and modulate collagen fibril organisation are likely to be important and a promising therapeutic target.
In studying how TSPs bind into ECM, we identified a protein sequence motif that is widely conserved between TSPs and is required for them to accumulate into ECM made by cultured cells. TSPs mutated at this site are secreted normally by cells but are not held in the ECM. We discovered recently that this site works by mediating interactions between separate TSP molecules. These interactions cause TSP clusters to form small dot-like structures or "puncta". From this research we developed a model, (a hypothetical diagram), of how TSPs can enter and cluster in ECM to impact on collagen fibril organisation. Our model is novel because neither the molecular identity of the motif or its role in interactions between TSP molecules were known before. Our central goals are:
1), To further understand mechanisms of TSPs within cell culture ECM, to extend the model and strengthen its accuracy.
2), To test how the site we have identified in cell culture works in living animals. To make this test is essential to understand how our discoveries in cell culture relate to protein function in real tissues. With the mouse we can examine the role of the TSP interaction site in the skin of an animal close to human anatomy and physiology that is used widely in biomedical research.
3). From the new genetic strains of mice we will also isolate cells from the skin so that we can closely study their properties in culture and relate the mechanisms that we identify in goal 1 to effects of TSPs on cell functions and ECM properties. These experiments will generate additional materials from the experimental mice and help us understand how our new knowledge might be adapted for clinical materials.

Technical Summary

The extracellular matrix (ECM) is an essential component of the tissue environment of cells. Molecular composition, 3-dimensional (3D) organisation and mechanical properties of ECM all provide important cues that control cell phenotype and the assembly of body organs. Standard 2D cell culture does not replicate this environment and the processes by which 3D tissue ECM assembly is maintained through life are poorly understood. This is a major challenge in the ECM field: for example, for in vitro handling of stem cell populations, to maintain cells close to their in vivo differentiation state, or to understand effects of ageing or chronic diseases that are increasing health problems in the UK and worldwide. Progress with advanced cell culture can help reduce and replace animal use in medical research. This application aims to understand molecular systems that support proper assembly of 3D interstitial ECM. We approach this question with a focus on thrombospondins (TSPs), because of recent appreciation that these are very highly-conserved accessory ECM proteins and because of evidence for roles as modulators of collagen fibril organisation in mammals.
Aim 1. Recent data have led us to a novel, unexpected model of a conserved mechanism for how TSPs are deposited into ECM. The mechanistic goal is to understand this process at molecular and cellular levels.
Aim 2. To Identify the specific roles of ECM-bound TSPs in interstitial ECM organisation in vivo. We will examine the roles of ECM-accumulation of TSP1 in the interstitial ECM of mouse dermis, under homeostatic conditions and in the tight skin mouse that has fibrotic excess of dermal ECM.
Aim 3. To elucidate how mechanisms of ECM-accumulation of TSP1 impact on organisation and functions of fibroblast-derived 3D ECM and fibroblast phenotype. Mechanisms identified in Aim 1 will be related to fibroblasts and their native ECM, exploiting fibroblasts from the new genetically-modified mice developed in Aim 2.

Planned Impact

Non-academic beneficiaries of our research will include:
1. Clinical researchers working on tissue repair and regeneration, fibrosis, atherosclerosis, arthritis, ageing or pseuodoachondroplasia. Possible impacts: new understanding of the fundamental biology underpinning the conditions they treat, new information about possible therapeutic approaches. New potential collaborations with basic researchers.
2. Biotech industry R+D, specifically companies interested in 3D cell culture, tissue assembly, tissue repair, artificial organs. These contacts will need to be made in the course of the research. We anticipate links may be facilitated by further faculty interactions with Prof. Antony Hollander and his collaborators.
Possible impacts: Impacts: access to information about the basic biology of the ECM. New potential collaborations with basic researchers to develop novel therapeutic approaches. Training possibilities for researchers from my lab. in their labs, and vice versa.

3. Local pupils at primary and secondary school level, prospective undergraduates, teachers.
Impacts: increased knowledge of cutting edge research questions and techniques, increased interest in pursuing science at an advanced level. Increased understanding of mechanisms by which extracellular matrix is built that can inform taught courses on animal cell biology. Research outcomes that will be beneficial to cell biology teaching for demonstrating to students how class materials relate to biomedical research. Increased understanding of the value and limitations of cell culture vs animal use in basic experimental research.

The public will benefit indirectly from the increase in knowledge about basic mechanisms and function of extracellular matrix. Indirectly, and in the long term, people suffering from diseases linked to extracellular matrix pathologies may also benefit.

Publications

10 25 50
 
Description International Strategic Fund
Amount £400 (GBP)
Organisation University of Bristol 
Sector Academic/University
Country United Kingdom
Start 06/2015 
End 08/2015
 
Description University of Bristol Cancer Fund
Amount £5,000 (GBP)
Organisation University of Bristol 
Sector Academic/University
Country United Kingdom
Start 07/2017 
End 06/2018
 
Title Scaleable methodology for isolation of extracellular matrix from cultured cells 
Description We have published an account of our method for isolation of extracellular matrix from cultured cells with an associated video demonstration of the procedure as "Hellewell, A.L., Rosini, S. and Adams, J.C. (2017). A Rapid, Scalable Method for Isolation, Functional Study and Analysis of Cell-Derived Extracellular Matrix. Journal of Visualized Experiments, 2017 Jan 4. (119). doi: 10.3791/55051" This is an open access publication. 
Type Of Material Technology assay or reagent 
Year Produced 2017 
Provided To Others? Yes  
Impact Article at Journal of Visualised Experiments has had 560 views from Jan 4 2017 to March 15 2017. Publication of this article has resulted in an invitation to speak at the "Optimizing Cell Culture Technology" conference in Boston, MA (to be held Aug 21/22 2017). 
 
Title Proteomics dataset on secreted heparin-binding proteins of mouse embryo fibroblasts that differ between wildtype and pdia3-null mouse embryo fibroblasts 
Description The publication "Hellewell, AL, Heesom, KJ, Jepson, MA, and Adams JC (2022). PDIA3/ERp57 Promotes a Matrix-rich Secretome that Stimulates Fibroblast Adhesion through CCN2. AJP-Cell Physiology, https://doi.org/10.1152/ajpcell.00258.2021" includes a comparative TMT proteomics dataset that identifies 21 proteins less abundant in the conditioned media of pdia3-mull mouse embryo fibroblasts compared to wild-type MEF, and 7 proteins of increased abundance. The data identify possible new substrates of PDiA3, several of which are associated with extracellular matrix and 'the matrisome". 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact too early on publication re external impacts. We will have a follow up manuscript that examines possible domains and/or fold families over-represented in the dataset. 
 
Title TSP superfamily dataset 
Description This is a dataset on a newly identified superfamily of thrombospondin-related proteins that are principally encoded in invertebrates. The dataset is included in a manuscript currently accepted for publication (March 2019) at Molecular Biology and Evolution. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? No  
Impact This dataset will be of value to a) researchers studying the metazoan ECM and its evolution,b) researchers with specific interests in the ECM of invertebrates, especially simple model organisms such as cnidarians, sponges and ctenphores. b), researchers studying biology and functions of thrombospondins 
 
Description Identification of thrombospondin binding site(s) on fibrillar collagens 
Organisation University of Cambridge
Country United Kingdom 
Sector Academic/University 
PI Contribution It is a specific Aim of my MRC-funded research to identify the thrombospondin-binding site(s) on fibrillar collagens. As proposed in the application, this work is being carried out in collaboration with Richard Farndale, Biochemistry, University of Cambridge through the collagen synthetic peptide Toolkits that his lab. has developed. Myself and a team member have visited Cambridge in Oct 2013 and July 2014 to carry out the initial screens of full Toolkits on site. With the identification of several candidate peptides, further analysis of the binding interactions, including tests against mutant peptides prepared previously by the Farndale laboratory, is now ongoing in Bristol. Expts. to date have tested the peptides against intact thrombospondin-1. My lab is now preparing recombinant domain deletion proteins that will be used to identify which TSP domain interacts with the identified collagen-derived peptides. (12/11/2014) March 2019: Mechanistic outcomes from this project were published in the paper Rosini et al (2018).
Collaborator Contribution Richard Farndale's laboratory has published extensively on the identification of binding sites on fibrillar collagens for a variety of ligands. The collagen Toolkits represent, in my view, the best way forward to define precisely the molecular nature of the interaction of thrombospondin with fibrillar collagens II and III. The contribution of Richard Farndale and his lab. members to the collaboration is in the form of sharing of the Toolkits, previously prepared mutant peptides, expertise in handling and interpreting these experiments, and our mutual interests in extracellular matrix biology. 2019- further stocks of key peptides have been prepared by the Farndale laboratory, with the aim for further collaboration to test peptide effects on ECM in vivo in a non-vertebrate model.
Impact Manuscript that includes this collaboration submitted in 2017. Revised version submitted 2018, decision is pending. 2019 update: This paper was published 2018 in Science Signaling (Rosini et al. 2018).
Start Year 2012
 
Description Informal collaboration on thrombospondin1 and pro collagen binding 
Organisation University of Lyon
Country France 
Sector Academic/University 
PI Contribution Experiments to examine in vitro binding of procollagen domains to thrombospondin1
Collaborator Contribution Partner laboratory contributed high-quality recombinant proteins and intellectual expertise.
Impact Manuscript submitted in 2017. Revised version submitted in 2018.
Start Year 2015
 
Description Molecular modelling collaboration 
Organisation University of Bristol
Department School of Biochemistry Bristol
Country United Kingdom 
Sector Academic/University 
PI Contribution Research interest in molecular modelling related to known structures of domains of thrombospondins/ potential surface-exposed binding sites.
Collaborator Contribution Partners are expert in molecular modelling, provide insights for lab. experiments and potential point mutations to probe protein-protein integration sites.
Impact Manuscript accepted for publication March 2019 by Molecular Biology and Evolution (multi-disciplinary: cell biology, developmental biology, molecular modelling, bioinformatics)
Start Year 2015
 
Description Thrombospondin in the simple extracellular matrix of the cnidarian, Hydra magnipapillata 
Organisation Heidelberg University
Country Germany 
Sector Academic/University 
PI Contribution My lab studies the roles of mammalian thrombospondins in 3D extracellular matrix organisation. We have also examined the evolution of TSPs by in silico studies. These resulted in the identification of a single TSP in the cnidarian, Hydra. Since Hydra ECM (mesoglea) is well-studied as a very simple ECM system, I have collaborated with Dr. Suat Ozbek in Heidelberg who is an expert in Hydra biology. My lab. has examined the oligomerisation of Hydra TSP by expression of recombinant domains. In collaboration with Prof. D. Woolfson (Bristol) synthetic peptides corresponding to the oligomerisation domain have been analysed in vitro for oligomer state. The ISF travel award enabled me to visit Heidelberg last July to discuss what is needed to ready the study for publication. 2019: further molecular phylogenetic studies have revealed a thrombospondin superfamily that appears to have originated at the emergence of metazoans. This analysis has been combined with molecular modelling and additional collaboration with Dr. Ozbek to prepare a paper (accepted for publication in March 2019).
Collaborator Contribution Dr. Ozbek's laboratory have identified Hydra TSP within isolated mesoglea. They have raised an antibody to the native protein. The have carried out in situ hybridisation or qPCR for the Hydra TSP transcript in adult hydra under normal conditions, or under conditions that perturb signalling in the body axis. The findings have raised new questions about the regulation of mammalian TSPs. I have collaborated by contributing a molecular phylogenetic analysis of cnidarian thrombospondins. Dr. Ozbek's laboratory also undertook localisation and functional studies on the newly-identified "mega-Thrombospondin" which have been integral to the preparation of a paper.
Impact none as yet, manuscript in preparation. March 2019: The Hydra TSP study was published in Scientific Re[orts in 2018 (Lommell, Strompe, Hellewell et al, 2018). The study of the TSP superfamily was accepted for publication March 2019 (Shoemark et al, to be published in Molecular Biology and Evolution). March 2023: Dr. Ozbek has re-invited me as a collaborator for a new project on the mesoglea proteome of the cnidarian N. vectensis.
Start Year 2012
 
Title Method for ECM isolation from cell cultures 
Description We have formalised a laboratory method for isolation of extracellular matrix from cultured cells which can be applied at various scales to any adherent cell type. This was published as a method in 2017: Hellewell, A.L., Rosini, S. and Adams, J.C. (2017). A Rapid, Scalable Method for Isolation, Functional Study and Analysis of Cell-Derived Extracellular Matrix. Journal of Visualized Experiments, 2017 Jan 4. (119). doi: 10.3791/55051. PMID: 28117783. This is not a novel method but an update of a prior method. 
Type Of Technology New/Improved Technique/Technology 
Year Produced 2017 
Impact Enquiries from other laboratories. JCA invited to speak at CHI "Bioprocessing" Summit conference in Aug. 2017 (Boston, USA). See also awards section. 
 
Description Biomedical Sciences Art of Science Exhibition 2015 (organisation contribution by MRC-funded researchers) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact This activity was undertaken by the two researchers who are supported on my MRC award. Dr. Hellewell led the activity this year. This activity involves and exhibition of submitted research-based images that capture the "Art of science". These are judged in various categories by a panel of external judges including an artist. The exhibit is open for a week for viewing by the public and school children. There is also voting for a "People's choice" image. The activity was started several years ago in Biomedical Sciences and has become a popular annual event. In 2015, there were many entries from the physical sciences and geography as well as biomedical sciences.
Year(s) Of Engagement Activity 2015
 
Description Undergraduates and awareness of biosciences research 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Undergraduate students
Results and Impact Visits to my lab by a) potential undergraduates via UCAS open days at University of Bristol. b) work-shadowing experiences for current Biochemistry undergraduates for experience of what a researcher's job entails. c) summer research project experiences for 2 undergraduates interested in making their careers in research. d) participation in Open Day exhibit, discussions with prospective undergraduates and their parents.
Year(s) Of Engagement Activity 2017
 
Description Work shadowing by sixth form school student from Chippenham 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Student was connected with my lab. through the Univ of Bristol "Widening Participation" scheme, as a sixth former considering embarking on a biological sciences degree and wishing to learn more about research as a career.

Raised student's enthusiasm and helped with her decision to apply for biological sciences undergraduate course. My lab. members found her curiosity engaging and felt rewarded for having shared their time.
Year(s) Of Engagement Activity 2013