Impact assessment of diagnostic tools for multi-drug resistant and (MDR-TB) drug sensitive tuberculosis (TB) in the Philippines

Lead Research Organisation: Liverpool School of Tropical Medicine
Department Name: Clinical Sciences

Abstract

While the Philippines has made great strides in Tuberculosis (TB) control, it continues to be the 6th largest cause of mortality and morbidity in the country. There are around 27,000 deaths annually and an estimated 290,000 new cases of TB each year at an incidence rate of 292 per 100,000. The percentage of TB cases with Multi-drug resistance (MDR-TB) is 2% for new cases and 21% for retreatment cases. The World Health Organization (WHO) estimate that only 12-16% of actual MDR-TB cases are detected of which only two-thirds are successfully treated. In the largest province in the country (Cavite) case detection rates have been improving, however only 35% of the estimated smear-positive MDR-TB cases are currently detected.

Improvement in access to accurate diagnosis is necessary to reduce further the burden of TB/MDR-TB. Encouragingly there is a pipeline of new diagnostic tools becoming available. For example, Xpert MTB/RIF is a new technology recommended by the World Health Organization that has the potential to make a significant difference to diagnosis of TB and MDR-TB in high burden countries like the Philippines. At the present time there are just 16 sites that perform the Xpert MTB/Rif test scattered over the different regions of the country. If the benefits of these developments are to be realized in the Philippines it is essential an appropriate strategy on scale-up is developed. However, more work is needed on the data to go beyond test accuracy in order to promote rational, evidence-based decision-making on uptake and implementation. TB diagnostics are not implemented in isolation, but are always part of an algorithm that operates in conjunction with other diagnostic approaches, such as empirical treatment or radiology. Computer modelling is an approach that can bring together the published and national data to provide policy makers with the evidence they need to support rational decisions.

In this study a number of alternative diagnostic options will be researched using an innovative modelling approach to project patient and health system outcomes including understanding the cost effectiveness of alternative options. Working with the National TB programme (NTP) of the Philippines these projections will be used to develop a strategy on scale up of new diagnostics in the largest province of the Philippines (Cavite). Filipino researchers from the De la Salle Health Sciences Institute (DLSHSI) will also be trained and equipped to conduct research in other provinces and on other diagnostic tools as they become available.

Our aim is to equip Filipino researchers and the NTP of the Philippines with a tested impact assessment approach that can be used to project the impact of new diagnostic tools and algorithms for MDR-TB and TB. Thus enabling policy makers to make rational and appropriate decisions on the scale-up of new diagnostic tools across the country. The approach used in this study has the potential to be applied in many other contexts around the world where TB and MDR-TB is a major barrier to public health and therefore economic development.

Technical Summary

The objective of the research is to support the cost-effective roll-out of new tools and algorithms for the diagnosis of tuberculosis (TB) and multi-drug resistant TB (MDR-TB) in the Philippines. This will lead to improvements to TB/MDR-TB case detection and cure in the Philippines and promote the economic development and welfare of the country. The tools investigated will include the molecular test Xpert MTB/RIF and new point of care tests under development. The research programme will have 5 components:
1. Data collation- Data on the infrastructure, performance, and costing of the processes for TB and MDR-TB diagnosis and treatment will be collated. The sequence of events that patients follow in order to be diagnosed and start appropriate treatment will be mapped.
2. Model development- A computer model of the patient pathways using the innovative Virtual Implementation modelling approach will be developed. The approach produces a dynamic and visual representation of the pathways and will be used to project patient and health system outcomes. The model will be tested using data from Cavite province.
3. Cost effectiveness analysis- Outputs from the model will be used to estimate the incremental cost effectiveness of alternatives (Cost per Disability Adjusted Life Year (DALY) averted).
4. Strategy development - Working with policy makers from the National TB Programme (NTP) a strategy for the scale-up of new diagnostic tools and algorithms will be developed for Cavite province that takes account of the projected impacts and cost effectiveness of each option.
5. Capacity Building & Dissemination- An easy to use version of the model will be made available to the NTP and the De la Salle Health Sciences Institute (DLSHSI) using WITNESS software (www.lanner.com/en/). Training and support will be provided so researchers and the NTP can develop a strategy for new diagnostics in other provinces of the Philippines. Manuscripts will be submitted for publication.

Planned Impact

The following groups will benefit from this research:-

1. Filipino research organisations - Through the research, new skills and approaches to impact assessment will be developed. Training will be provided. New models will be deployed that can be used in the future as new diagnostic technologies are developed. De La Salle Health Institute (DLSHSI) will be involved in writing manuscripts and publishing the research of this project.

2. The National TB programme (NTP) and policy makers within the Ministry of Health in the Philippines - The research will result in the development of a strategy for the roll-out of new diagnostics in Cavite province and beyond. The strategy will be supported by evidence of impact on patients and the health system.

3. Patients in the Philippines with TB/MDR-TB that need to access rapid diagnostic tests - The implementation of the strategy developed will improve access to rapid diagnostics for TB/MDR-TB in the Philippines. This will likely to start in Cavite province and then move onto the rest of the country.

4. Developers of new diagnostics for TB/MDR-TB - Demand for those diagnostics that are identified as being cost effective in the Filipino context will be created. Evidence will be presented which helps other developers to identify the key characteristics necessary to maximise cost effective impact.

5. Economic development of the Philippines - Among the 8 disease priority areas in this Call, it is tuberculosis that has the biggest impact in terms of mortality, morbidity ,economic costs and burden of disease (exceeding 1.3 million DALYs per year) afflicting the poorest as well as the most productive age groups. Access to quick and accurate diagnosis remains the biggest challenge especially among MDR-TB and smear-positive cases. Among the top 10 countries globally with the highest MDR TB burden, the Philippines ranked 7th with 8,500 estimated MDR TB cases among notified cases3. This project's objective of developing a model for assessing the deployment of new diagnostics including Xpert MTB/RIF in Cavite, the most populous province in the Philippines, will greatly advance TB control in the Philippines. Early detection would reduce treatment delay, save thousands of lives and improve the economic plight of hundreds of thousands of Filipinos.

6. The wider research community in Asia-Pacific region and beyond - Research will be published in high impact journals that will act as a stimulus to further productive research into TB/MDR-TB, XDR-TB, diagnostics, and the use of patient pathway modelling in TB and other priority diseases.

Publications

10 25 50

publication icon
Tomeny EM (2020) Patient-cost survey for tuberculosis in the context of patient-pathway modelling. in The international journal of tuberculosis and lung disease : the official journal of the International Union against Tuberculosis and Lung Disease

 
Description Many findings came about through the modelling in a few key areas. Three are detailed below, in concordance with our first three publications from the project:

TB diagnostic panels are not functioning in Philippines as they could be - they are understaffed and they are much less specific than they could be if properly staffed.

Patient costs collection tools are likely underestimating the true scale of the burden.

Due to the high levels of clinical diagnosis and Empiric treatment of Tuberculosis in Philippines, rolling out GeneXpert is unlikely to greatly increase the number of DS tb sufferers correctly placed onto treatement, and dependent on loss to follow-up rates, may even cause a decrease in correctly treated DS patients. That said, the number of DR infected patients who would be correctly treated would significantly increase with Xpert rollout.
Exploitation Route We are currently working on further publications from our modelling which will be published in 2020.

Regarding the three points above, already members of the DOH in the Philippines are considering our findings re the Xpert Panel, and are considering improvements that could be made.

The patient cost survey modelling results show that perhaps patient cost surveys ought to be asked in a different way to elicit higher quality answers.

Finally, our modelling has highlighted the high level of CD, and has shown that Active Case Finding is necessary in the Philippines as a means of tackling TB.
Sectors Healthcare,Pharmaceuticals and Medical Biotechnology

 
Description Already we have been receiving feedback from clinicians that they are considering their diagnostic decisions a little differently, and we have already secured funding to investigate how ACF should be implemented in Philippines to find additional previously unreported cases. Furthermore, they have fed directly into policy making teams within the national tuberculosis program.
First Year Of Impact 2017
Sector Healthcare
Impact Types Policy & public services

 
Description Strategy on implementation of Xpert MTB/RIF in the Philippines
Geographic Reach Asia 
Policy Influence Type Influenced training of practitioners or researchers
Impact The training workshops, presentations to TB practitioners and reports have influenced the policy makers in the Philippines in relation to the roll-out of Xpert MTB/RIF in the country. In particular in relation to understanding of the major impacts of Xpert in the Philippines being focussed on MDR-TB diagnosis and patient costs rather than improvements to drug sensitive TB identification. The study has shown which algorithms using Xpert are cost-effective and also shown how the new tools being developed (i.e. ULTRA and OMNI) may actually provide a greater benefit.
 
Description Niche Centers in the Regions for R&D (NICER) Program - Call for Proposals
Amount ₱16,112,933 (PHP)
Funding ID DOST-DLSMHSI-PCHRD19-000361 
Organisation Government of the Republic of the Philippines 
Department Department of Science and Technology
Sector Private
Country Philippines
Start 02/2019 
End 01/2022
 
Title Patient Pathway modelling 
Description Patient pathway modelling allows researchers to project the outcomes of alternative diagnostic tools taking into account the operational characteristics of the context - these tools have been developed specifically for use of researchers and the TB program in the Philippines 
Type Of Material Improvements to research infrastructure 
Year Produced 2018 
Provided To Others? Yes  
Impact Researchers and the NTP in the Philippines can project impact of new diagnostic tools for TB in their own context by collecting and entering data into the model and running for alternative strategies 
 
Title WHO Protocol for survey to determine direct and indirect costs due to TB and to estimate proportion of TB-affected households experiencing catastrophic total costs due to TB 
Description Used the tool to assess cost impacts for patients in Cavite province of diagnosis and treatment for Tuberculosis 
Type Of Material Improvements to research infrastructure 
Provided To Others? No  
Impact Ongoing 
 
Title Health System and Patient cost data for TB diagnosis in Bulacan and Davao 
Description No of cases split presumptive, new, previously treated, bacteriologically confirmed and clinically diagnosed Health System costs Patient Costs 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? No  
Impact The impact of new diagnostics will be different between provinces (and sites), in part because the proportion of TB cases that are bacteriologically confirmed is highly variable 
 
Title Health system data for 8 sites in Cavite province where TB diagnosis takes place 
Description No of cases split presumptive, new, previously treated, bacteriologically confirmed and clinically diagnosed 
Type Of Material Database/Collection of data 
Provided To Others? No  
Impact High levels of clinically diagnosed suggesting over diagnosis of TB 
 
Title Patient cost data for TB diagnosis 
Description Collection from patients of the impact of TB diagnosis and treatment on their direct and indirect costs 
Type Of Material Database/Collection of data 
Provided To Others? No  
Impact Further analysis necessary 
 
Title Virtual Implementation Modelling 
Description Operational modelling of TB diagnostics using discrete event simulation 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Assist in impact assessment of new diagnostic algorithms for TB 
 
Description Collaboration with Lanner Software Company 
Organisation Lanner Group
Country United Kingdom 
Sector Private 
PI Contribution We showcase Lanner's software through our use in Virtual Health System modelling, including links to their software in appropriate outputs and presentations. We have established strong links with Lanner, with frequent communication and sharing of software and workings.
Collaborator Contribution Our partners give us favourable access to their software licences for use in advancing global health
Impact Our modelling in both TB-FIT and continued TB-FIT2 projects, and all additional simulation modelling outputs are due to this collaboration.
Start Year 2014
 
Description De La Salle Health Sciences Institute 
Organisation De La Salle University
Country Philippines 
Sector Academic/University 
PI Contribution Experience in impact assessment and operational modelling to assist in policy decision on new diagnostics for Tuberculosis
Collaborator Contribution Access to data and knowledge of the Filipino health system in particular for TB diagnosis
Impact Ongoing
Start Year 2016
 
Description Department of Health in Philippines 
Organisation Philippines Department of Health
Country Philippines 
Sector Public 
PI Contribution Multiple meetings over the years, met most recently 7th August 2022
Collaborator Contribution Ongoing discussions relating to TB-control in Philippines
Impact Discussions have been ongoing since the TB-FIT project began, with exchange of information and strategies.
Start Year 2016
 
Title Virtual Implementation Modelling 
Description Operational modelling of new diagnostic algorithms for TB and MDR-TB in Cavite province 
Type Of Technology Software 
Year Produced 2017 
Impact The model has now been used to project impacts of new diagnostics for TB in Cavite province including cost effectiveness. The analysis suggests that an effective policy for new TB diagnostics in Cavite province which could be implemented with currently available technology would be full roll-out of Xpert MTB/RIF. Furthermore, at the point when the Ultra cartridge becomes available, this would provide additional benefits. Finally, while being the most expensive strategy modelled, point of care testing with Omni at Barangay health stations has the potential to extend the benefits even further.would provide the largest benefit I both diagnosis of TB and reduced patient costs, and is shown to be the most cost-effective. 
 
Description De La Salle Expo TB-FIT Booth 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Undergraduate students
Results and Impact The De La SAlle Medical and Health Sciences Institute Research Division held a whole day Exposition on November 13th 2019. It was attended by 200 Participants both international and local. LSTM Exhiibited a booth, showing our institution and research. There was also a booth specifically for the TB-FIT project.
Year(s) Of Engagement Activity 2019
URL https://www.dlsu.edu.ph/research/publishing-house/other-journals/likha/
 
Description Expert Panel Discussion 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact The Linking Innovations Health and Arts forum was hosted by De La Salle Medical and Health Sciences institute. Ewan Tomeny, the lead modeller from the TB-FIT project sat on a panel and discussed among other things the outputs of the project.
Year(s) Of Engagement Activity 2019
 
Description Interview of key study staff for CNN Philippines 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact Ewan Tomeny and Bertie Squire were interviewed about the project and the wider implications. These interviews were broadcast on CNN Philippines
Year(s) Of Engagement Activity 2018
 
Description Kick - off meeting in Das Marinas - Feb 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Study participants or study members
Results and Impact Agree overall objectives and work plan for the project
Begin reviewing patient pathways
Agree plan for data collation
Produce and agree detailed plan for year 1
Engage and enthuse whole project team
Year(s) Of Engagement Activity 2016
 
Description LSTM REF Seminar Panel Discussion 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A panel discussion relating to advancing the treatment of MDR-TB. Hosted by LSTM in conjunction with their 2021 REF submission. Chaired by Prof Squire, including presentations from three TB-FIT staff and with Dr Charles Yu on the panel.
Year(s) Of Engagement Activity 2021
URL https://www.lstmed.ac.uk/advancing-the-clinical-and-public-health-management-of-multi-drug-resistant...
 
Description Meeting with DoH in Manila to discuss project and policy implications 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact Discussion with colleagues from department of Health National Tuberculosis Program in Manila.
Year(s) Of Engagement Activity 2019
 
Description Model Building Training Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Intensive model building workshop for colleagues working on TB-FIT2 project
Year(s) Of Engagement Activity 2022
 
Description PHILCAT 2017 - August 2017 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Presentation of the projects of impact of 11 alternative diagnostic algorithms for TB in Cavite province including a cost effectiveness analysis
Year(s) Of Engagement Activity 2017
URL http://www.philcat.org/PDFFiles/TBFITMODELLING8.29.17.pdf
 
Description Patient costing seminars - Nov 2016 and Oct 2017 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Discussions concerning patient data collection and analysis for TB research and in support of WHO target of eliminating catastrophic costs for patients with TB
Year(s) Of Engagement Activity 2017
 
Description Poster presentation of work at Union World Conference on Lung Health 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Poster presentation of our modelling at the Union Conference for Tuberculosis (virtual)
Year(s) Of Engagement Activity 2020
URL https://conf2020.theunion.org/
 
Description Presentation at PHILCAT Annual Convention 2018 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact Presentation to all staff involved in the TB program in the Philippines focusing on patient cost impacts of TB diagnosis and treatment.
Year(s) Of Engagement Activity 2018
URL https://www.philcat.org/25thconvention.html
 
Description Presenting of our work to the Department of Clinical Sciences Away Day 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact We presented findings of our work and described the methodologies to LSTM research staff in clinical sciences at our annual away day.
Year(s) Of Engagement Activity 2021
 
Description Press release 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Industry/Business
Results and Impact A press release written about our work for the manufacturer of the software we build our models in.
Year(s) Of Engagement Activity 2019
URL https://www.lanner.com/en-us/insights/news/lanner-s-simulation-technology-deployed-to-help-eradicate...
 
Description Progress meeting in Dasmarinas - July 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Study participants or study members
Results and Impact Review of patient pathways
Detailed review of all data collected
Meet with NTP stakeholders
Plan next stage
Year(s) Of Engagement Activity 2016
 
Description Project Meeting Training Workshop 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact A presentation of our project to clinicians,policy makers and charities. A big discussion on the next stage of the project and how to approach this
Year(s) Of Engagement Activity 2019
 
Description Project Presentation in Dasmarinas - November 2016 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact Presntation at the De La Salle Health Sciences Institute to staff, clinicians, nurses, students, project members and National TB Program managers
Year(s) Of Engagement Activity 2016
 
Description Project meetings and workshops 2018 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Study participants or study members
Results and Impact Project workshops and meetings in April, August and Dec 2018 in the Philippines to finalize the model, calibrate the model for 2 new regions (Bulacan and Davao) and to record interviews for online and radio transmission.
Year(s) Of Engagement Activity 2018
 
Description Project meetings in the Philippines - 2017 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Study participants or study members
Results and Impact Project meetings took place in the Philippines in April, August, December 2017 and January 2018
Year(s) Of Engagement Activity 2017
 
Description Project team meeting in Dasmarinas - April 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Study participants or study members
Results and Impact Understand policy decision making for TB diagnostic algorithms in two ways: What criteria are important? 7 What processes are used to weigh up different criteria?
Finalise patient pathway mapping
Diagnostic site visits
Diagnostic site visits
Review data collation for Cavite and the 6 sites to be modelled in detail
Discuss the patient costing model and data collection
Download the modelling software onto 2 computers in Philippines
Detailed plan for next 8 months (up to Dec 2016)
Agree timing of next visit
Year(s) Of Engagement Activity 2016
 
Description TB-FiT 2 Virtual Online Project Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Three day Modelling workshop conducted between UK and Philippines timezones.
Year(s) Of Engagement Activity 2020
 
Description The World Lung Health Conference 2017 - Guadalajara Oct 2017 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact Presented the outcome of detailed patient cost data collected as part of TB-FIT study, including estimates of the proportion of patients suffering catastrophic costs in Cavite province as a result of TB diagnosis and treatment.
Year(s) Of Engagement Activity 2017
 
Description Training in virtual implementation modelling - January 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Study participants or study members
Results and Impact Training study members and members of the National TB program in how to use Virtual Implementation modelling for impact assessment of new TB diagnostic algorithms
Year(s) Of Engagement Activity 2017
 
Description Training workshop - Jan 2018 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Study participants or study members
Results and Impact Training workhop to enable De La Salle Medical and Health Sciences Institute colleagues and members of the National TB Program of the Philippines to use the developed Virtual Implementation model to assess impact of new diagnostics for Tuberculosis in the Philippines (Principally focused on 3 provinces - Cavite, Davao and Bulacan)
Year(s) Of Engagement Activity 2018
 
Description Virtual Implementation Training Workshop Part 3 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Study participants or study members
Results and Impact Training members of the De La Salle Medical and Health Sciences Institute and the National TB Program to use the developed models to project impacts on TB yield, Health systems and patient costs including cost-effectiveness
Year(s) Of Engagement Activity 2018