How do KIR on uterine Natural Killer cells (uNK) regulate human pregnancy success?

Lead Research Organisation: University of Cambridge
Department Name: Pathology

Abstract

Several major disorders that women face during pregnancy, result from failure of the placenta to implant correctly into the mother's uterus or womb. During early pregnancy, fetal cells from the placenta, known as trophoblast cells, invade into the uterus and tap into her blood supply to sustain the growing baby. Failure of this process can lead to insufficient blood supply to the placenta and low birth weight babies. The 'starved' placenta can also cause a life-threatening syndrome (pre-eclampsia), which is characterised by a high maternal blood pressure and possible damage to her kidneys and other organs.

We are investigating how maternal immune cells in the lining of the uterus, known as uterine Natural Killer (uNK) cells, regulate the extent of trophoblast invasion. uNK cells have receptors called KIR that bind like a lock and key to HLA molecules on the invading trophoblast cells from the placenta. Both lock and key can vary. Our genetic studies show that when certain KIR receptors (present only in some mothers) bind to trophoblast HLA, this causes abnormal placental development and increases the risk of pre-eclampsia or a small baby. However binding of other KIR receptors to HLA does not cause this problem. Our question is: how do the mother's NK cells respond when these two different types of KIR recognise and bind the HLA molecules on the fetal trophoblast cells? We also want to ask why are responses triggered by some types of KIR detrimental while others enhance placental development? We will identify 'beneficial' and 'detrimental' responses by uNK cells and examine how they affect trophoblast invasion. Understanding the different responses of uNK will help us to pinpoint which pregnancies are at greatest risk and is an essential first step if we are to develop ways to treat these common disorders of pregnancy.

NK cells like those in the uterus are found in many tissues in the body, but show significant differences between organs. These 'tissue NK cells' have been very little studied compared with NK cells in blood. Also, NK cells even within the same tissue show tremendous variation in their responses. This will be one of the first studies of tissue NK cells, using techniques that can see how the responses of the many different types of NK cells in the tissue are controlled. Our findings will have wider implications, since therapeutic interventions targeting tissue NK cells are being developed for a range of diseases including cancer and in transplantation.

Technical Summary

Our aim is to understand how the complex system of interactions between variable maternal KIR receptors on uterine NK cells (uNK) and fetal HLA-C ligands regulates trophoblast behaviour during placental development.

Our genetic studies show that binding of the inhibitory receptor KIR2DL1 on uNK to the cognate HLA-C group 2 ligands (C2) on trophoblast increases risk of abnormal placentation, whereas binding of activating KIR2DS1 to C2 is protective. Both KIR and HLA-C are polymorphic and we will use mass cytometry (CyTOF) to determine how this variation affects the phenotype and responsiveness of primary uNK cells from the decidua compared with matched NK cells from peripheral blood (pbNK). This will be one of the first studies using high resolution CyTOF to directly compare matched uNK and pbNK responses from the same donor.
Using in vitro assays that mimic different maternal KIR/fetal HLA-C combinations, CyTOF will enable us to study how functional responses of uNK depend upon KIR genotype and maternal or fetal HLA-C status across the full range of uNK subsets. We will employ degranluation assays (CD107), cytokine production and microarrays, to analyse how KIR2DL1+ or KIR2DS1+ uNK subsets respond to targets expressing C1 or C2 and to primary trophoblast cells expressing these epitopes. This will allow us to define novel responses mediated by these KIR in uNK and determine how responses differ between KIR2DL1 alleles that confer different risks to pregnancy. Finally we will examine how these KIR responses regulate trophoblast invasion and differentiation.

These studies will lead to an understanding of how the functions of tissue NK cells are regulated compared to pbNK and how uNK regulate trophoblast behaviour during placentation in normal and abnormal pregnancies.

Planned Impact

Scientific Impact.
This research will initially benefit scientists and obstetricians because it will generate new knowledge and understanding of how maternal immune cells regulate placentation. Our findings will also have implications for immunologists more broadly, since no study of NK cells from solid tissue has previously been performed using CyTOF and therapeutic interventions targeting NKRs on tissue NK cells are being developed for a range of diseases including cancer and in transplantation. The way they will benefit is elaborated in the "academic beneficiaries" section.

Potential societal and economic impact of this research.
If we show how specific KIR/HLA-C combinations or KIR alleles increase risk of abnormal placentation this could lead to KIR and HLA-C typing before or during pregnancy to inform clinical management of high-risk pregnancies. Reducing the burden of pregnancy diseases such as pre-eclampsia, FGR or miscarriage would represent a long-term goal. This work could therefore benefit clinicians and other health care professionals in Obstetrics as well as the patients and their families.

Identified beneficiaries could also include those in industry and the commercial sector who wish to develop relevant screening tests in a clinical setting for genotyping maternal KIR at the allele level and maternal and fetal HLA-C typing of specific KIR and HLA-C alleles that increase pregnancy risk. Understanding the mechanisms by which KIR/HLA interactions increase the risk of pregnancy disorders will open up the possibility to develop methods to manipulate uNK/trophoblast interactions therapeutically. The project therefore has significant translational potential.

Development of new skills.
A key project goal involves the establishment of protocols and techniques for analysing NK cell function using mass cytometry (CyTOF) in Cambridge. Although this newly developed approach holds considerable promise for both research and clinical use, expertise is very limited in the UK. Cambridge only opened a CyTOF facility in December 2015. Both the Research Associate and a PhD student at Cambridge University (funded by a CASE studentship, from MedImmune) will receive training in these techniques through my collaboration with Peter Parham at Stanford. This will enhance capability and training here in Cambridge, which is essential if the technique is to be developed as a research or clinical tool. Through this project, both RA and PhD student will expand their skills in advanced cytometry, and in using complex bioinformatics tools for multiparameter data analysis such as ViSNE.
We aim to share this CyTOF antibody panel and expertise with others to enhance studies of NK biology and its clinical applications in the UK.

Engagement with the public about normal and abnormal pregnancy is clearly important.
My laboratory is actively involved in the Science Festival, which is held in Cambridge every year for two weeks in March. The general public come in large numbers to discuss with us the practical and ethical aspects of our work. During this project, we plan to continue to be actively involved in the Science Festival in the future. All the applicants frequently give public lectures about their research to specialist and non-specialist audiences and discuss their work with journalists to highlight potential translational findings to clinicians and to the public. The primary means of dissemination to the scientific and clinical communities will be results through publications and reviews in journals and at international meetings. The Cambridge University PR Department has well-established procedures for communication of important research findings to the public through newsletters, press-releases and websites. If translational findings emerge from this research, for example by identifying how KIR/HLA-C combinations significantly increase pregnancy risk, these will be rapidly communicated to clinicians and scientists.

Publications

10 25 50
 
Description Cambridge/Africa Alborada research fund
Amount £19,600 (GBP)
Organisation Cambridge-Africa Alborada Trust 
Sector Academic/University
Country United Kingdom
Start 11/2021 
End 03/2023
 
Title Characterisation of innate lymphoid cells in human blood and decidual tissue using a panel of antibodies by mass cytometry 
Description We have developed an antibody staining panel to characterise innate lymphoid cells and Natural killer cells in cells isolated from blood and human tissue samples. The antibodies are labelled using heavy metals and are suitable for mass cytometry, enabling up to 40 markers to be analysed simultaneously on primary human innate immune cells. This was one of the first publications to use mass cytometry on primary human tissue cells performed in this country. The technique was subsequently published in the journal Nature Communications 
Type Of Material Technology assay or reagent 
Year Produced 2020 
Provided To Others? Yes  
Impact This was one of the first publications to use mass cytometry on primary human tissue cells performed in this country. The panel is suitable for other research groups to use for characterising similar cells form other human tissue sources and is currently being used by my colleague and co-author Dr Francesco Colucci at the university of Cambridge to examine cells in ascites fluid from ovarian cancer patients in a collaboration with the biotech company Medimmune. 
URL https://pubmed.ncbi.nlm.nih.gov/31959757/
 
Title identification of antibodies that can distinguish alleles of KIR2DL1 in the same patient 
Description Genes of the Killer-cell immunoglobulin-like receptor (KIR) family are characterized by extensive allelic polymorphism. To date, 26 alleles have been identified for KIR2DL1, an inhibitory KIR that binds HLA-C allotypes bearing the C2 epitope (C2). Previous work has shown that different KIR2DL1 alleles vary in frequency and levels of expression. Furthermore, although KIR2DL1-Fc fusion proteins of several KIR2DL1 alleles bind C2 allotypes with differing strengths, it is not clear how these data translate into functional differences of primary NK cells. Here we screened a panel of anti-KIR antibodies from a variety of commercial and academic sources to produce a panel for use by multicolour flow cytometry to identify blood and uterine NK cell subsets expressing different KIR2DL1 alleles. This is the first time the expression levels and function of different KIR2DL1 alleles has been examined the same patient. Because the KIR2DL1 alleles are present in the same genetic background the effects of different alleles on NK function can be examined. Genetic studies suggest that the different alleles are associated with different clinical outcomes in conditions such as re-ecalmpsia and also in bone marrow transplantation. 
Type Of Material Antibody 
Year Produced 2018 
Provided To Others? Yes  
Impact This is the first time the expression levels and function of different KIR2DL1 alleles has been examined the same patient. Because the KIR2DL1 alleles are present in the same genetic background the effects of different alleles on NK function can be clearly separated. Genetic studies suggest that the different alleles are associated with different clinical outcomes in conditions such as pre-eclampsia and also in bone marrow transplantation. Development of this tool will enable us to understand the mechanisms underlying how different alleles of KIR2DL1 relate to different clinical outcomes. 
URL https://www.jimmunol.org/content/201/9/2593
 
Description Analysis of NK cells and Innate lymphoid cells in mouse decidua 
Organisation University of Cambridge
Department Department of Obstetrics & Gynaecology
Country United Kingdom 
Sector Academic/University 
PI Contribution I have contributed both intellectual input, and tissue, cells, reagents and expertise to the analysis of NK cells in human and mouse decidua.
Collaborator Contribution My partner is an expert in murine models to analyse natural killer cells function with particualar expertise in isolating and analysing cells form the pregnant decidua in mice.
Impact Multiple publications during the course of this award. doi: 10.1038/s41467-019-14123-z doi: 10.1038/s41467-018-06918-3 doi: 10.4049/jimmunol.1800860 doi: 10.4049/jimmunol.1900036 doi: 10.3791/62670 doi: 10.1016/j.immuni.2021.03.021 doi: 10.3389/fimmu.2021.607669 doi: 10.3389/fimmu.2022.808227 The collaboration is multidisciplinary and involves, flow cytometry, mass cytometry, the isolation and analysis of primary cells from both human and murine tissues, molecular biology and related RNA sequencing techniques, microscopy, and manipulation of mouse knockout and transgenic cell lines.
Start Year 2010
 
Description Collaboration to generate trophoblast organoids as targets to study interactions with maternal immune cells in decidua 
Organisation University of Cambridge
Country United Kingdom 
Sector Academic/University 
PI Contribution Collaboration with Dr Margherita Turco to generate trophoblast organoids as targets to study interactions with maternal immune cells in decidua. Advice and assistance in the provision of first trimester placental and decidual tissue. Dr Laura Esposito from my group has also undertaken some experimental work associated with the project. We are listed as co-authors on a recent Nature Paper published in 2018.
Collaborator Contribution Dr Margherita Turco has lead this project and undertaken the majority of the work. This resulted in the development of a trophoblast organoid culture system. These cells will be used as targets to examine how maternal NK cells respond to trophoblast. This is a key goal of the current MRC project.
Impact Collaboration resulted in a publication in journal Nature in 2018. Dr Sharkey listed as co-author and professor Ashley Moffett, (co-applicant on MRC project grant MR/P001092/1) was listed as joint senior author. Trophoblast organoids as a model for maternal-fetal interactions during human placentation. Turco MY, Gardner L, Kay RG, Hamilton RS, Prater M, Hollinshead MS, McWhinnie A, Esposito L, Fernando R, Skelton H, Reimann F, Gribble FM, Sharkey A, Marsh SGE, O'Rahilly S, Hemberger M, Burton GJ, Moffett A. Nature. 2018 Dec;564(7735):263-267. doi: 10.1038/s41586-018-0753-3. Epub 2018 Nov 28. PMID: 30487605 A second publication outlining this method has recently been pubished again with professor Ashley Moffett, (co-applicant on MRC project grant MR/P001092/1) listed as joint senior author. Establishment and differentiation of long-term trophoblast organoid cultures from the human placenta. Sheridan MA, Fernando RC, Gardner L, Hollinshead MS, Burton GJ, Moffett A, Turco MY. Nat Protoc. 2020 Oct;15(10):3441-3463. doi: 10.1038/s41596-020-0381-x. Epub 2020 Sep 9. PMID: 32908314
Start Year 2017
 
Description Collaboration to isolate and characterise Hofbauer cells form human plaacenta 
Organisation University of Cambridge
Department Department of Pathology
Country United Kingdom 
Sector Academic/University 
PI Contribution I have been involved in development of this project from the outset, to help recruit a new young investigator to my department, and assisted them in preparation of funding applications. When they were successful in winning an award, I have helped to train them in the specific skills required for isolation of Hofbauer cells from the placenta, I shared preliminary data of my own with them and subsequently contributed as an author to a major publication in the Journal of Experimental medicine. This described the isolation and comprehensive characterisation of these cells in human first trimester placenta.
Collaborator Contribution My partner rings a wealth of experience in the characterisation and isolation of macrophages from a variety of other tissues including human skin and from the study of the development of the fetal immune system. This person has made seminal discoveries in understanding the ontogeny and development of tissue macrophages in various human organs. We have worked together to enable her to focus these skills on studying placental macrophages, which are a neglected macrophage type, but which are clinically important because they play an important role in prevention of transplacental infection form mother to fetus during pregnancy.
Impact Publication in J. Exp Med DOI: 10.1084/jem.20200891 Phenotypic and functional characterization of first-trimester human placental macrophages, Hofbauer cells Collaboration was multidisciplinary and involved, flow cytometry, single cell RNA sequencing, normal Next generation sequencing, confocal microscopy, bioinformatics analysis of previously published datasets, infection of cells using human pathogens (Listeria).
Start Year 2017
 
Description Collaboration with Dr Amir Horowitz and Dr Peter Parham at Stanford University to phenotype human uterine NK cells using mass Cytometry. 
Organisation Stanford University
Department School of Medicine
Country United States 
Sector Academic/University 
PI Contribution I established a collaborative project with Dr Amir Horowitz and Dr Peter Parham at Stanford University to phenotype human uterine NK cells using mass Cytometry. This involved the modification of a mass cytometry panel initally developed at Stanford for use in staining human immune cells from blood, in order to stain immune cells from placental and decidual tissue. Panel was modified to include new markers relevant to tissue NK cells. This project to characterise the phenotype and function of tissue NK cells and compare them with NK cells from blood was published in January 2020 with Dr Andrew Sharkey and Dr Francesco Colucci as joint senior authors.
Collaborator Contribution Dr Amir Horowitz and Dr Peter Parham at Stanford University developed an antibody panel for characterising the phenotype and functional responses of NK cells from blood. They developed staining and analysis methods for handling the resulting high-dimensional data. They shared their antibody panel and practical and analysis expertise with our group from Cambridge and helped to mentor a PhD student, Osh Huhn to successfully complete the project. This project formed a significant part of this student's PhD Thesis, which was awarded in January 2020. A paper describing the project was published in the same month:
Impact Publication: Distinctive phenotypes and functions of innate lymphoid cells in human decidua during early pregnancy. doi: 10.1038/s41467-019-14123-z. Specific techniques: mass cytometry and Flow cytometryused to develop an antiobopdy stianing panel with over 35 antibodies Huhn O, Zhao X, Esposito L, Moffett A, Colucci F, Sharkey AM. How Do Uterine Natural Killer and Innate Lymphoid Cells Contribute to Successful Pregnancy? Front Immunol. 2021 Jun 21;12:607669. doi: 10.3389/fimmu.2021.607669.
Start Year 2017
 
Description Collaboration with Dr Roser Vento-Tormo and Dr Sarah Teichmann to undertake single cell RNA sequencing analysis of immune cells at the human materno-fetal interface. 
Organisation The Wellcome Trust Sanger Institute
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution We participated in training and advice to Dr Roser Vento-Tormo on isolation and FACS analysis of maternal immune cells from the human decidua during early pregnancy. Participated in early experimental design, some limited data interpretation and in revision of manuscript for publication.
Collaborator Contribution Majority of the specialist benchwork as well as the data analysis was performed by Dr Vento-Tormo and colleagues based in the group of Dr Sarah Teichmann at the Wellcome trust Sanger Centre, Cambridge.
Impact Collaboration resulted in a publication in journal Nature in 2018. Dr Sharkey listed as co-author and professor Ashley Moffett, (co-applicant on MRC project grant MR/P001092/1) was listed as joint senior author
Start Year 2017
 
Description Collaborative Research grant with Dr Dorotheah Obiri to study Biomarkers of placental dysfunction to predict pre-eclampsia in mothers with sickle cell trait and sickle cell disease 
Organisation Noguchi Memorial Institute for Medical Research (NMRR)
Country Ghana 
Sector Academic/University 
PI Contribution I have worked together with Dr Obiri and Dr Irving Aye of the University of Cambridge department of Obstetrics and Gynecology, to develop a research program and submission for grant funding to the Cambridge/Africa Alborada research fund. This funding bid was successful and the award was confiemd in November 2021
Collaborator Contribution This collaboration arose when Dr Obiri approached me following a lecture I gave on placental biology. Dr Obiri has collected placental samples from a large cohort of Ghanain women with and without sickle cell trait. RNA will be isolated in Accra and Dr Obiri will visit Cambridge to undertake RNA sequencing and other analysis to identify changes associated with sickle cell trait that may increase the risk of placental dysfunction leading to fetal growth restriction or pre-ecalmpsia during pregnancy.
Impact Successful funding bid. Collaboration is multidisciplinary and will involve: - clinicians and bikomedical scientists in in Accra Ghana, - biomedical scientists and bioinformaticians in Cambridge Department of Pathology - and obstetricians in Cambridge University Department of Obstetrics and Gynecology.
Start Year 2021
 
Description Cambridge Science festival 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Organised exhibition and practical activities as part of cambridge Science festival open event based in my research department. This was open to the public, drop in event suitable for all ages, March 17th 2018, 10-4pm. Entitled 'Discover the most important organ you never knew you had.
Aim of the event is to explain the aims of our work on placental development and how it seeks to improve understanding and clinical management of pregnancy disorders. Event included demonstrations, posters, videos and practical activities.
Year(s) Of Engagement Activity 2018
URL https://www.sciencefestival.cam.ac.uk/events/discover-most-important-organ-you-never-knew-you-had
 
Description Cambridge Science festival 2019 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Organised exhibition and practical activities as part of cambridge Science festival open event based in my research department. This was open to the public, drop in event suitable for all ages, March 15th 2019, 10-4pm. Entitled 'Discover the most important organ you never knew you had.
Aim of the event is to explain the aims of our work on placental development and how it seeks to improve understanding and clinical management of pregnancy disorders. Event included demonstrations, posters, videos and practical activities.
Year(s) Of Engagement Activity 2019
 
Description Centre for Trophoblast Research, placental biology online course 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact The Cambridge Centre for Trophoblast research (CTR) organises an annual workshop over 7 days for international participants on the subject of placental biology. This is an expert workshop comprisiong lectures, practical and seminars with participants also presenting their work and discussion groups. It is intended to provide training in state of the art techniques and aims to encourage your investigators from a wide variety of disciplines (biomedical science and clinicians) to become involved in placental reasearch. Trianing workshops in grant writing are also involved.

Each year I participate by both giving lectures as well as practical worskshops in cell isolation and analysis techniques such as FACS and mass cytometry- focussed on placental cells.
Year(s) Of Engagement Activity 2018,2019,2021,2022
URL https://www.trophoblast.cam.ac.uk/placentalbiologycourse