Natural Killer Cells as Effectors in HIV Cure Strategies
Lead Research Organisation:
UNIVERSITY OF OXFORD
Department Name: Experimental Medicine
Abstract
Antiretroviral therapy (ART) has resulted in the life expectancy of HIV infected individuals no longer being significantly less than uninfected people. However, ART must be taken daily, has side effects and comes with significant financial costs. This has placed renewed emphasis on curing HIV. The barrier to a cure is a population of infected cells termed the reservoir, that remain invisible to both therapy and the immune system.
Recent studies have shown that patients treated early in the course of HIV infection have lower viral reservoirs, and some can control viral replication after stopping ART for long periods of time. This is termed 'post treatment control' (PTC), and is a form of remission from HIV infection. If we understand it, PTC may help us find a cure for HIV. As of yet, we cannot predict which patients will and will not become post-treatment controllers. Some data suggests that a type of immune cell - called a Natural Killer (or 'NK') cell - might play an important role in this phenomenon.
In this study, we will use two large cohorts of HIV infected patients who started ART early in infection (called SPARTAC and HEATHER) to determine if characteristics of NK cells can affect reservoir size, how to predict patients who will control viral replication off therapy, and find out how early ART will affect NK cell function. If we can find out how NK cells may help induce control of the virus, such that treatment can be stopped for a while, this will help us plan new treatments as we search for a cure for HIV infection.
Recent studies have shown that patients treated early in the course of HIV infection have lower viral reservoirs, and some can control viral replication after stopping ART for long periods of time. This is termed 'post treatment control' (PTC), and is a form of remission from HIV infection. If we understand it, PTC may help us find a cure for HIV. As of yet, we cannot predict which patients will and will not become post-treatment controllers. Some data suggests that a type of immune cell - called a Natural Killer (or 'NK') cell - might play an important role in this phenomenon.
In this study, we will use two large cohorts of HIV infected patients who started ART early in infection (called SPARTAC and HEATHER) to determine if characteristics of NK cells can affect reservoir size, how to predict patients who will control viral replication off therapy, and find out how early ART will affect NK cell function. If we can find out how NK cells may help induce control of the virus, such that treatment can be stopped for a while, this will help us plan new treatments as we search for a cure for HIV infection.
Technical Summary
Antiretroviral therapy (ART) successfully controls viral replication but is not a cure for HIV infection. ART requires daily medication (with significant financial costs), has side effects, and patients on ART still face higher risks of various morbidities than uninfected patients. Recent evidence from the VISCONTI cohort suggests a subset of patients treated early in infection can successfully control viraemia for a long period of time following ART cessation. Understanding this phenomenon could help generate therapeutic approaches to reduce the reservoir and guide the design of HIV cure clinical trials where ultimate efficacy will require taking patients off ART. Preliminary data from the VISCONTI cohort suggests that NK cells might play a role in PTC while the role of NK cells on reservoir size in patients on early ART has yet to be studied.
Therefore, we will use samples from two large clinical cohorts of primary infected HIV patients - SPARTAC and HEATHER. The SPARTAC trial randomized patients into one of three arms: no ART (standard of care), 24 weeks of ART, and 48 weeks of ART followed by a scheduled treatment interruption. The HEATHER cohort is the largest cohort of primary infection in the UK with longitudinal samples from patients over time. Additionally, 20 patients in the HEATHER cohort will undergo a scheduled intensively monitored treatment interruption in the PITCH study.
In this application, we will use samples from these 3 studies to examine the phenotype and function of NK cells to determine if NK cells can affect the size of the reservoir, the time to viral rebound in patients who stop ART, and the effect of early ART on NK function.
Therefore, we will use samples from two large clinical cohorts of primary infected HIV patients - SPARTAC and HEATHER. The SPARTAC trial randomized patients into one of three arms: no ART (standard of care), 24 weeks of ART, and 48 weeks of ART followed by a scheduled treatment interruption. The HEATHER cohort is the largest cohort of primary infection in the UK with longitudinal samples from patients over time. Additionally, 20 patients in the HEATHER cohort will undergo a scheduled intensively monitored treatment interruption in the PITCH study.
In this application, we will use samples from these 3 studies to examine the phenotype and function of NK cells to determine if NK cells can affect the size of the reservoir, the time to viral rebound in patients who stop ART, and the effect of early ART on NK function.
Planned Impact
The research in the proposal will characterize the relationship between NK cells and reservoir size and post treatment control (PTC)/time to viral rebound post treatment interruption, and analyze the functionality of NK cells in early treated ART patients over time. This work will potentially identify markers of PTC that could identify who might control viraemia for long periods of time after stopping ART.
1. Who will benefit from this research
1.1) Commercial sector i.e. pharmaceutical industry
1.2) Clinical trials units
1.3) Policy makers, e.g. Public Health England
1.4) Healthcare providers, e.g. the NHS
1.5) HIV-infected patients
2. How will they benefit from this research?
2.1) The pharmaceutical industry is interested in a cure for HIV, evidenced by their recent investment (GSK £20,000,000) into a cure center in University of North Carolina, USA. This work would benefit them in two major ways. First, the research might open up a new class of cells to clear a reactivated viral reservoir (NK cells) if they are shown to have a major impact on reservoir size or PTC. Additionally, if NK cell characteristics are shown to impact PTC, industry could use this information when designing their clinical trials especially in terms of a structured treatment interruption where any markers of successful PTC would be of use. A safe treatment interruption would also be the most effective way of evaluating clinical trials for HIV cure.
2.2) Clinical trials units would also benefit from the identification of cell/markers responsible for PTC as this would aid clinical trial design and affect which clinical markers are measured in patients during HIV cure studies.
2.3) Policy makers would be interested in the results of the proposed studies particularly if a subset of patients can be taken safely off ART, which would potentially affect treatment guidelines. Additionally, our results could also guide funding directions in HIV cure studies. This would not be an immediate effect as many clinical studies would be needed to confirm any biomarkers we might find.
2.4) Healthcare providers would be interested in our data as the cost of ART is high (lifetime treatment £361,000) and being able to safely take patients off ART would be cost effective.
2.5) HIV-1 infected patients would benefit from our research for several reasons. Many are interested in cure studies and our research would aid in their design and direction. Additionally, allowing some patients to safely stop ART would free patients from taking medication daily. This is also a long-term benefit as our results would have to be vigorously tested before allowing patients to stop ART.
1. Who will benefit from this research
1.1) Commercial sector i.e. pharmaceutical industry
1.2) Clinical trials units
1.3) Policy makers, e.g. Public Health England
1.4) Healthcare providers, e.g. the NHS
1.5) HIV-infected patients
2. How will they benefit from this research?
2.1) The pharmaceutical industry is interested in a cure for HIV, evidenced by their recent investment (GSK £20,000,000) into a cure center in University of North Carolina, USA. This work would benefit them in two major ways. First, the research might open up a new class of cells to clear a reactivated viral reservoir (NK cells) if they are shown to have a major impact on reservoir size or PTC. Additionally, if NK cell characteristics are shown to impact PTC, industry could use this information when designing their clinical trials especially in terms of a structured treatment interruption where any markers of successful PTC would be of use. A safe treatment interruption would also be the most effective way of evaluating clinical trials for HIV cure.
2.2) Clinical trials units would also benefit from the identification of cell/markers responsible for PTC as this would aid clinical trial design and affect which clinical markers are measured in patients during HIV cure studies.
2.3) Policy makers would be interested in the results of the proposed studies particularly if a subset of patients can be taken safely off ART, which would potentially affect treatment guidelines. Additionally, our results could also guide funding directions in HIV cure studies. This would not be an immediate effect as many clinical studies would be needed to confirm any biomarkers we might find.
2.4) Healthcare providers would be interested in our data as the cost of ART is high (lifetime treatment £361,000) and being able to safely take patients off ART would be cost effective.
2.5) HIV-1 infected patients would benefit from our research for several reasons. Many are interested in cure studies and our research would aid in their design and direction. Additionally, allowing some patients to safely stop ART would free patients from taking medication daily. This is also a long-term benefit as our results would have to be vigorously tested before allowing patients to stop ART.
Publications

Boelen L
(2018)
Inhibitory killer cell immunoglobulin-like receptors strengthen CD8+ T cell-mediated control of HIV-1, HCV, and HTLV-1.
in Science immunology

Burns JE
(2021)
Tolerability of four-drug antiretroviral combination therapy in primary HIV-1 infection.
in HIV medicine


Fidler S
(2021)
HIV cure research in the time of COVID-19 - Antiretroviral therapy treatment interruption trials: A discussion paper.
in Journal of virus eradication

Foster C
(2017)
Early antiretroviral therapy reduces HIV DNA following perinatal HIV infection.
in AIDS (London, England)


Frater J
(2021)
Safety and Immunogenicity of the ChAdox1 nCoV-19 (AZD1222) Vaccine Against SARS-CoV-2 in HIV Infection
in SSRN Electronic Journal

Gossez M
(2019)
Virological remission after antiretroviral therapy interruption in female African HIV seroconverters.
in AIDS (London, England)

Gupta RK
(2019)
HIV-1 remission following CCR5?32/?32 haematopoietic stem-cell transplantation.
in Nature
Title | Finding Our Way - An NHS Tribute Garden - RHS Chelsea 2021 |
Description | Garden at Chelsea Flower Show |
Type Of Art | Artistic/Creative Exhibition |
Year Produced | 2021 |
Impact | To happen in September |
Description | British HIV Association Science and Education Sub-Committee |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Membership of a guideline committee |
Impact | Impact of HIV care guidelines in the UK and national HIV research portfolio |
Guideline Title | British HIV Association Treatment Guidelines 2016 update |
Description | Citations in British HIV Association Treatment Guidelines 2016 update |
Geographic Reach | National |
Policy Influence Type | Citation in clinical guidelines |
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Geographic Reach | Local/Municipal/Regional |
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Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Influenced training of practitioners or researchers |
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Start | 09/2020 |
End | 09/2021 |
Description | Identification of SARS-CoV2 Spike Glycoprotein antibodies fromIdentification of SARS-CoV2 Spike Glycoprotein antibodies from extremely high-throughput paired antibody sequencing data extremely high-throughput paired antibody sequencing data |
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Sector | Academic/University |
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Start | 04/2020 |
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Title | ATAC Seq |
Description | Assay to determine transcriptional status of human genes. Assay was taught by collaborators at Harvard and work was carried out by a student GM in both Oxford and Harvard |
Type Of Material | Technology assay or reagent |
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Provided To Others? | Yes |
Impact | Paper submitted relating HIV therapy status and persistence to transcriptional activity |
Title | PITCH sample repository |
Description | Samples from participants undertaking antiretroviral therapy treatment interruptions |
Type Of Material | Biological samples |
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Provided To Others? | Yes |
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Title | Single Genome HIV Proviral sequencing for bNAb sensitivity |
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Type Of Material | Technology assay or reagent |
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Title | PITCH Database |
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Collaborator Contribution | Contribute expertise, patient recruitment, strategy and laboratory assays to this NIHR collaboration. Part of the evolution of the CHERUB network |
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Sector | Academic/University |
PI Contribution | Contribute expertise, patient recruitment, strategy and laboratory assays to this NIHR collaboration |
Collaborator Contribution | Contribute expertise, patient recruitment, strategy and laboratory assays to this NIHR collaboration. Part of the evolution of the CHERUB network |
Impact | Multiple publications (listed), new collaborations (eg Rockefeller - listed) and new funding (detailed) |
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Sector | Academic/University |
PI Contribution | This is a new collaborative project funded by the Bill and Melinda Gates Foundation. Funding is pending but the grant is worth $6.5 million and should be confirmed by the end of March 2019. This is a collaboration between Oxford, Imperial and Rockefeller to run a clinical trial of neutralising antibody therapy to treat HIV in the UK. |
Collaborator Contribution | Rockefeller provides neutralising antibodies for the trial, Imperial provides clinical trial expertise and Oxford provides laboratory assays |
Impact | Set-up grant from BMGF Knowledge exchange for assays |
Start Year | 2018 |
Description | RIO Clinical Trial |
Organisation | Rockefeller University |
Department | Laboratory of Virology and Infectious Disease |
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Sector | Academic/University |
PI Contribution | This is a new collaborative project funded by the Bill and Melinda Gates Foundation. Funding is pending but the grant is worth $6.5 million and should be confirmed by the end of March 2019. This is a collaboration between Oxford, Imperial and Rockefeller to run a clinical trial of neutralising antibody therapy to treat HIV in the UK. |
Collaborator Contribution | Rockefeller provides neutralising antibodies for the trial, Imperial provides clinical trial expertise and Oxford provides laboratory assays |
Impact | Set-up grant from BMGF Knowledge exchange for assays |
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Collaborator Contribution | Developed technology and bioinformatics |
Impact | Grant funding Clinical trial |
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Title | METHODS TO DETECT CELLS LATENTLY INFECTED WITH HIV |
Description | The present invention provides a method of identifying a cell latently infected with HIV, wherein the method comprises: providing a sample of cells; encapsulating individual cells in droplets; screening for the presence of HIV derived DNA in the genomic DNA of encapsulated cells; and identifying, and optionally isolating, cells containing latent HIV derived DNA. |
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Year(s) Of Engagement Activity | 2019 |
Description | CHELSEA FLOWER SHOW HIV STIGMA GARDEN |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Garden presented at RHS Chelsea 2018. Themed on HIV Stigma. Won Silver Guilt Award. Huge national and international media attention. Prime time BBC1 TV report on the garden as well as national and international TV and Radio coverage. Handed out 10,000 leaflets on site. Estimated audience greater than 3 million |
Year(s) Of Engagement Activity | 2018 |
URL | https://www.medsci.ox.ac.uk/cherub-hiv-garden |
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Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Podcast as part of Wellcome Trust project with 'A Gay and a Non-Gay' |
Year(s) Of Engagement Activity | 2020 |
Description | Podcast on HIV stigma and research |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
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Form Of Engagement Activity | A talk or presentation |
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