Is Alzheimer's disease triggered by a failure of the brain's blood supply?

Lead Research Organisation: University of Sussex
Department Name: Sch of Psychology

Abstract

Many risk factors for Alzheimer's disease (AD), such as stroke, altered blood pressure and APOE4, the main genetic risk factor for AD, are associated with a decrease in blood flow to the brain. This decrease in blood flow may trigger AD by reducing local oxygen levels in small regions of the brain, promoting production of beta amyloid, which is toxic to neurons. We want to find out whether this is the case, because then treatments could be targeted to protect against AD by increasing brain blood flow and brain oxygen levels, reducing the occurrence of the disease.

We have already found that mice expressing human APOE4 show early decreases in blood flow in some, but not all, blood vessels, and these vessels are less able to dilate to increase blood flow when nearby neurons are active and require more energy. This supports the idea that APOE4 leads to an early failure of the brain to supply enough energy to active brain tissue, and that oxygen levels in APOE4 brains are likely to become inadequate near these vessels. Now, we want to test whether this decrease in blood flow promotes the build-up of beta amyloid in tissue fed by these vessels, leading to changes in neuronal activity and behaviour.

We will test this by breeding mice that express APOE, and a form of beta amyloid that can be switched on and off, and a protein that tracks neuronal activity. In our first experiment, we will record blood vessel function, brain activity, blood oxygen levels, and amyloid plaques in these mice while they are alive. We will first identify which blood vessels don't work well in APOE4 mice, then "switch on" beta amyloid production to see if beta amyloid aggregates more around these dysfunctional blood vessels than around those where blood flow is normal, and whether the neuronal activity near these vessels changes as beta amyloid accumulates. Because beta amyloid itself impairs blood vessel function, we expect that the functioning of these blood vessels will become more and more impaired, decreasing overall oxygen levels in the brain and accelerating the build-up of beta amyloid and neuronal damage.

In a parallel experiment, we will look at post mortem tissue from these and other mice, to test whether the regions where beta amyloid first builds up already have low oxygen levels, and which enzymes and organelles within the cell might be responsible for triggering its accumulation. We will do this using antibodies against beta amyloid peptides, proteins that exist at increased levels when oxygen is low and proteins that are found in specific compartments of the cell. To check that blood vessels don't work so well just because the brain is already using less energy, we will also measure the rate at which brain slices consume oxygen and track how this is affected by APOE4 and beta amyloid.

We expect that the areas of the brain that are affected earlier in AD will have the lowest levels of oxygen and vascular function, even before beta amyloid is produced, than those that are affected later in AD. To test whether the sensitivity of some brain regions to AD is due to increased hypoxia in these areas, we will compare regions that are affected early in the disease (hippocampus and entorhinal cortex) with an area that is affected later in the disease (visual cortex). This will allow us to understand whether early alterations in brain oxygenation and vascular function are involved in the increased susceptibility of these brain regions to damage.

Finally, we will give the mice a drug that increases brain blood flow by protecting small vascular cells, called pericytes, to test if it also prevents beta amyloid accumulation and memory impairments, to see if increasing brain blood flow and oxygenation could be a useful strategy to prevent AD.

This work will discover whether a decrease in brain blood flow could trigger Alzheimer's disease and whether preventing this decrease in blood flow could be an important therapeutic strategy.

Technical Summary

Cardiovascular risk factors and APOE4 expression increase the risk of Alzheimer's disease (AD), possibly by decreasing brain blood flow. Our data show that brain capillaries are constricted and neurovascular coupling is impaired in APOE4 mice. Such decreased cerebral blood flow could trigger a vicious cycle of beta amyloid production, accumulation and progressive impairment of brain blood flow. If this "vascular hypothesis" of AD is correct, improving cerebrovascular function at early stages should reduce beta amyloid accumulation and subsequent neurodegeneration.

We will track the time course of the development of cerebrovascular, neuronal and behavioural dysfunction in mice that carry APOE4 and produce beta amyloid in a controllable manner, testing the prediction that beta amyloid should accumulate preferentially around already dysfunctional blood vessels, before discovering if improving cerebral blood flow reduces beta amyloid accumulation. To do this, we will generate mice expressing human APOE3 or 4, and doxycycline-suppressible human APPSwe/Ind. After baseline characterisation, doxycycline will be removed, enabling production of beta amyloid. First, we will track beta amyloid accumulation and neurovascular function in vivo, using 2-photon imaging to test whether it first aggregates in tissue surrounding blood vessels that already show impaired flow and neurovascular coupling. Second, we will immunohistochemically label unaggregated forms of beta amyloid at different time points, alongside markers of the vasculature, hypoxia, beta amyloid degradation and lysosomes, to test whether production and aggregation both start in hypoxic locations. Finally, we will pharmacologically increase cerebral blood flow and test if this reduces beta amyloid accumulation and improves neurovascular reactivity and cognitive function. Our project will test whether decreased brain blood flow could trigger AD, suggesting potential new therapeutic strategies.

Planned Impact

Our research will reveal how decreases in local blood flow caused by the main genetic risk factor for Alzheimer's disease (AD), APOE4, promote hypoxia, beta amyloid accumulation and progressive classic AD pathology, including synaptic changes and the development of cognitive deficits. Understanding these changes and their causal links will provide important insights into the onset of Alzheimer's disease. The findings will therefore be of interest to a range of stakeholders including academics, health policy groups, the public and the pharmaceutical industry, and we will maximise the impact of our research by engaging these different groups:

Academics, including neuroscientists, psychologists and pharmacologists (short, medium & longer term). Aside from capacity building, in which the postdoctoral fellow and technician will benefit from developing the advanced approaches used in these studies, the research spans multiple fields and scientific sub-disciplines (neuroscience, cardiovascular physiology, psychology) so the relevance of our findings to local, national and international academic audience will be widespread (see Academic Beneficiaries section for details).

Governmental and non-governmental research and policy organisations (NGOs; medium & longer term). Our work examines the effects of the main genetic risk factor for AD on the interactions between vascular and brain function that could initiate AD. It is of relevance for the development of public health policies to promote cardiovascular health, which could potentially reduce the incidence of AD by protecting blood vessel function. It also has implications for what might be the most promising pharmacological interventions to protect blood vessel function at pre-symptomatic stages of AD in at risk populations such as APOE4 carriers. Our results will therefore be valuable for informing evidence-based governmental policies (e.g. Department of Health/Public Health England) to promote healthy eating and an active lifestyle, and Health Care providers (NHS Choices), who may be interested in planning for early interventions in genetically at-risk people.

The general public, through an increased understanding of the impact of lifestyle on vascular and therefore cerebral and cognitive health (medium & longer term). This could enable positive individual changes and community-based support to inform and influence others. There is already widespread public understanding about the theoretical importance of good cardiovascular health. However, our work will illustrate the consequences of vascular dysfunction on brain function, so effective communications of our results will have the opportunity for significant impact in motivating people to adopt lifestyle choices that promote cardiovascular health.

Pharmaceutical industries involved in discovering novel therapeutic targets and compounds for the prevention of vascular dysfunction and neurodegenerative disease (longer term). The pharmaceutical industry will benefit from an improved understanding of how disruptions to brain blood flow promote the accumulation of beta amyloid. We predict our research will enable targeting of different processes at progressive stages of the disease, and will provide a model to test interventions at these different stages. For example, we predict that early interventions that promote vascular function (reactivity) will be effective at slowing or preventing the disease onset, while later interventions may need to be able to reverse pathological changes that have already occurred (e.g. beta amyloid build-up, vascular constriction). The effectiveness of differently timed pharmacological interventions at preventing vascular dysfunction, hypoxia and neuronal and cognitive change can all be tested in our model. Our project provides proof-of-concept for this approach and will be further developed in the future in collaboration with the Sussex Drug Discovery Centre.

Publications

10 25 50
 
Description Characterising a novel brain oscillation in the awake hippocampus
Amount £19,694 (GBP)
Funding ID RGS\R1\191203 
Organisation The Royal Society 
Sector Charity/Non Profit
Country United Kingdom
Start 06/2019 
End 03/2022
 
Description How does SARS CoV-2 infect blood vessels?
Amount £236,133 (GBP)
Funding ID MR/V036750/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 11/2020 
End 05/2022
 
Title BrainEnergyLab/HCvsV1_NVC_Manuscript: NVCinHCmanuscript_March2021_release1 
Description Analysis files for processing of images of blood vessels and neuronal calcium changes, to extract neuronal activity and vascular diameter changes and subsequent processing of these data. 
Type Of Material Data analysis technique 
Year Produced 2021 
Provided To Others? Yes  
Impact This will facilitate the analysis of neurovascular data by labs new to this field. 
URL https://zenodo.org/record/4593010#.Yg_5CS-l2fU
 
Title Data for figures in the paper "Neurovascular coupling and oxygenation are decreased in hippocampus compared to neocortex because of microvascular differences 
Description Data from paper https://www.nature.com/articles/s41467-021-23508-y#Sec17, showing microvascular, neurovascular and haemodynamic differences between hippocampus and visual cortex physiology in awake mice. 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact These data can be used for further analysis of regional differences between brain regions both by neuronal or vascular researchers. 
URL https://figshare.com/s/af41650f9277cec99c20
 
Title Data from: Method of place cell classification determines the population of cells identified 
Description Data from manuscript "Method of place cell classification determines the population of cells identified".Each zip file is one session, with the filename indicating the mouse name and the date of recording (i.e. mouse_date.zip). Each zip file contains a mat-file called 'Fall.mat'. This was generated by using Suite2P1 on the recordings, which were recorded at 7.51 fps. Within this, F represents the fluorescence traces (ROIs by timepoints), and Fneu represents the neuropil fluorescence traces (ROIs by timepoints). We calculated the fluorescence using: F-0.7*Fneu. For more information on the Suite2P outputs see: https://suite2p.readthedocs.io/en/latest/outputs.htmlThe zip files also contain a mat-file called 'locomotion.mat'. This contains the location trace for each session, scaled between 0-1. The length of the track was 200 cm, so in order to get the location in cm, one can simply do: loco * 200. 1. Pachitariu, Marius, et al. "Suite2p: beyond 10,000 neurons with standard two-photon microscopy." Biorxiv (2017). 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact I anticipate this will be a valuable dataset to allow researchers to test their methods of identifying place cells against our models. 
URL https://figshare.com/articles/dataset/Data_from_Method_of_place_cell_classification_determines_the_p...
 
Title Data from: Method of place cell classification determines the population of cells identified 
Description Data from manuscript "Method of place cell classification determines the population of cells identified".Each zip file is one session, with the filename indicating the mouse name and the date of recording (i.e. mouse_date.zip). Each zip file contains a mat-file called 'Fall.mat'. This was generated by using Suite2P1 on the recordings, which were recorded at 7.51 fps. Within this, F represents the fluorescence traces (ROIs by timepoints), and Fneu represents the neuropil fluorescence traces (ROIs by timepoints). We calculated the fluorescence using: F-0.7*Fneu. For more information on the Suite2P outputs see: https://suite2p.readthedocs.io/en/latest/outputs.htmlThe zip files also contain a mat-file called 'locomotion.mat'. This contains the location trace for each session, scaled between 0-1. The length of the track was 200 cm, so in order to get the location in cm, one can simply do: loco * 200. 1. Pachitariu, Marius, et al. "Suite2p: beyond 10,000 neurons with standard two-photon microscopy." Biorxiv (2017). 
Type Of Material Database/Collection of data 
Year Produced 2021 
Provided To Others? Yes  
Impact This dataset and associated code will allow researchers to test the impact on their own experimental data of the methods of place cell classification they use. This should facilitate a greater understanding of the limits placed on interpretation of choice of place cell classification methods and facilitate greater consistency in analysis and interpretation across labs. 
URL https://figshare.com/articles/dataset/Data_from_Method_of_place_cell_classification_determines_the_p...
 
Title Inflammation Index Analysis Code 
Description This is the analysis code for conducting the microglial analysis pipeline reported in https://royalsocietypublishing.org/doi/10.1098/rsob.210045. It allows extraction of numerous morphological features from 3D stacks of images of microglia and dimensionality reduction to calculate a sensitive index of altered morphology (e.g. in inflammation) from a training dataset that can be used on a separate dataset to detect differences in morphology across experimental conditions. 
Type Of Material Data analysis technique 
Year Produced 2021 
Provided To Others? Yes  
Impact This pipeline entirely uses open access software so brings complex image analysis to many researchers including those otherwise inexperienced in image analysis who would otherwise rely on expensive commercial software solutions that are less powerful. 
URL https://github.com/BrainEnergyLab/Inflammation-Index
 
Title Supporting Data for Gradual Not Sudden Change: Multiple Sites of Functional Transition Across the Microvascular Bed 
Description The data provided was used to generate the figures in Shaw et al (2022); Gradual Not Sudden Change: Multiple Sites of Functional Transition Across the Microvascular Bed, Frontiers in Aging Neuroscience. Full details of how the data was generated and processed is provided in that paper. The ReadMe file attached to this record gives details on the data including measurements and column headings.A single Excel spreadsheet containing all the data points used for graphs in Figures 4-9 and Supplementary Figures 3-6 as individual work sheets (uploaded as .xlsx), and individual .csv files containing all the data points used for graphs in Figures 4-9 and Supplementary Figures 2-6 (for non-proprietary format). Abstract In understanding the role of the neurovascular unit as both a biomarker and target for disease interventions, it is vital to appreciate how the function of different components of this unit change along the vascular tree. The cells of the neurovascular unit together perform an array of vital functions, protecting the brain from circulating toxins and infection, while providing nutrients and clearing away waste products. To do so, the brain's microvasculature dilates to direct energy substrates to active neurons, regulates access to circulating immune cells, and promotes angiogenesis in response to decreased blood supply, as well as pulsating to help clear waste products and maintain the oxygen supply. Different parts of the cerebrovascular tree contribute differently to various aspects of these functions, and previously, it has been assumed that there are discrete types of vessel along the vascular network that mediate different functions. Another option, however, is that the multiple transitions in function that occur across the vascular network do so at many locations, such that vascular function changes gradually, rather than in sharp steps between clearly distinct vessel types. Here, by reference to new data as well as by reviewing historical and recent literature, we argue that this latter scenario is likely the case and that vascular function gradually changes across the network without clear transition points between arteriole, precapillary arteriole and capillary. This is because classically localised functions are in fact performed by wide swathes of the vasculature, and different functional markers start and stop being expressed at different points along the vascular tree. Furthermore, vascular branch points show alterations in their mural cell morphology that suggest functional specialisations irrespective of their position within the network. Together this work emphasises the need for studies to consider where transitions of different functions occur, and the importance of defining these locations, in order to better understand the vascular network and how to target it to treat disease. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact This dataset is available to other researchers enabling them to test our conclusions about gradual change across the vascular network. 
URL https://sussex.figshare.com/articles/dataset/Supporting_Data_for_Gradual_Not_Sudden_Change_Multiple_...
 
Title Supporting Data for Gradual Not Sudden Change: Multiple Sites of Functional Transition Across the Microvascular Bed 
Description The data provided was used to generate the figures in Shaw et al (2022); Gradual Not Sudden Change: Multiple Sites of Functional Transition Across the Microvascular Bed, Frontiers in Aging Neuroscience. Full details of how the data was generated and processed is provided in that paper. The ReadMe file attached to this record gives details on the data including measurements and column headings.A single Excel spreadsheet containing all the data points used for graphs in Figures 4-9 and Supplementary Figures 3-6 as individual work sheets (uploaded as .xlsx), and individual .csv files containing all the data points used for graphs in Figures 4-9 and Supplementary Figures 2-6 (for non-proprietary format). Abstract In understanding the role of the neurovascular unit as both a biomarker and target for disease interventions, it is vital to appreciate how the function of different components of this unit change along the vascular tree. The cells of the neurovascular unit together perform an array of vital functions, protecting the brain from circulating toxins and infection, while providing nutrients and clearing away waste products. To do so, the brain's microvasculature dilates to direct energy substrates to active neurons, regulates access to circulating immune cells, and promotes angiogenesis in response to decreased blood supply, as well as pulsating to help clear waste products and maintain the oxygen supply. Different parts of the cerebrovascular tree contribute differently to various aspects of these functions, and previously, it has been assumed that there are discrete types of vessel along the vascular network that mediate different functions. Another option, however, is that the multiple transitions in function that occur across the vascular network do so at many locations, such that vascular function changes gradually, rather than in sharp steps between clearly distinct vessel types. Here, by reference to new data as well as by reviewing historical and recent literature, we argue that this latter scenario is likely the case and that vascular function gradually changes across the network without clear transition points between arteriole, precapillary arteriole and capillary. This is because classically localised functions are in fact performed by wide swathes of the vasculature, and different functional markers start and stop being expressed at different points along the vascular tree. Furthermore, vascular branch points show alterations in their mural cell morphology that suggest functional specialisations irrespective of their position within the network. Together this work emphasises the need for studies to consider where transitions of different functions occur, and the importance of defining these locations, in order to better understand the vascular network and how to target it to treat disease. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact This will allow other people to mine our data for their own research purposes, which may involve other studies into neurovascular function. 
URL https://sussex.figshare.com/articles/dataset/Supporting_Data_for_Gradual_Not_Sudden_Change_Multiple_...
 
Description ARUK Public Engagement Event 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact ARUK held a public engagement event with talks about Alzheimer's disease from scientists, ARUK staff and artists working with scientists and dementia patients and their carers. Researchers, including my group, had stands around the conference room, where we talked about our research, showed examples of our experiments and had hands-on activities to communicate the strong links between cardiovascular and brain health in the context of dementia. I spoke to several people with older relatives with dementia who were concerned about what they could do to reduce their chances of developing it themselves, and was able to communicate the importance of lifestyle factors that promote cardiovascular health.
Year(s) Of Engagement Activity 2020
 
Description Alzheimer's research 'world first': blood oxygen levels could explain why memory loss is an early symptom 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Media (as a channel to the public)
Results and Impact Press release for a publication https://www.nature.com/articles/s41467-021-23508-y/metrics showing lower oxygen levels in the hippocampus, putting it at risk for damage, potentially in Alzheimer's disease. This press release was taken up widely, by at least 26 news outlets across the globe.
Year(s) Of Engagement Activity 2021
URL https://archive-stage.sussex.ac.uk/news/press-releases/id/55494
 
Description Article summary for the Science Media Centre 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I wrote a summary, for the Science Media Centre, of the findings, interpretation and questions raised of an article that was widely taken up by the press (on Viagra protecting from Alzheimer's disease). Based quotes were used by several publications including The Sun, The Telegraph, the New York Post, reaching an approximate audience of 7 million.
Year(s) Of Engagement Activity 2021
URL https://www.sciencemediacentre.org/expert-reaction-to-study-identifying-sildenafil-viagra-as-a-candi...