The genetic basis of invasive meningococcal disease
Lead Research Organisation:
Imperial College London
Department Name: Infectious Disease
Abstract
Invasive meningococcal disease (IMD) is a rare disease affecting children and young adults due to bacterial infection by Neisseria meningitidis. Life-threatening infection of the blood, and/or brain lead to IMD. Although most people carry this bacteria in their nose, the majority do not develop IMD. We know that genetic mutations of specific immune pathways make individuals more susceptible to IMD. Patients with these mutations are unable to produce factors that help kill the bacteria. These mutations however are only present in a small number of IMD patients. We thus put forward the idea that other genetic mutations may exist in IMD patients. To identify new genes in IMD, we sequenced DNA from ~700 children with life-threatening bacterial infections, including 250 IMD patients. The sequences from these patients revealed mutations in other protective immune signalling pathways known to be involved in sensing invading bacteria. Here, we propose to test whether these new mutations affect the way a cell responds to the bacteria in an experimental infection. We will use cells from the lining of the airway, and blood cells. We chose to carry out these experiments in these cell types as airway cells are important for the entry of bacteria into the nose, and the blood cells will model the 'invasive' stage of disease when the bacteria replicates in the blood leading to life-threatening infection. Finally we will test some of these mutations in a zebrafish model of bacterial infection where we may visualize how the body responds to infection in real-time. Understanding the role of these genes will improve our understanding of why certain individuals develop life-threatening infections and may lead to better treatment and prevention of childhood infections.
Planned Impact
Impact Summary
Economic and Societal Impact- Imperial College London, Industrial partners, UK NHS
Findings from this study may identify genes and pathways that may be amenable to therapeutic intervention not only for meningococcal disease but for other forms of sepsis. Despite the availability of the meningococcal vaccines, its long-term efficacy has not yet been determined. Although antibiotics remains an effective treatment course for IMD patients, novel therapeutics focusing on prevention or immuno-modulatory treatment would be of importance as antimicrobial resistance continues to be a problem. Not only will this generate revenue for Imperial College and Industrial partners, it will lessen the UK NHS burden due to hospitalizations due to meningococcal disease or sepsis.
Individual Impact- Patients and families with IMD or sepsis
Findings from this study will identify morbid genes in patients which will be explained to the patient. Patients will be re-contacted by an infectious disease constant as part of the BRC paediatric infectious disease clinic at St Mary's Hospital. The may also benefit from targeted treatment depending on the nature of the genetic mutation, or followed carefully by the specialty clinic to ensure proper treatment.
Economic and Societal Impact- Imperial College London, Industrial partners, UK NHS
Findings from this study may identify genes and pathways that may be amenable to therapeutic intervention not only for meningococcal disease but for other forms of sepsis. Despite the availability of the meningococcal vaccines, its long-term efficacy has not yet been determined. Although antibiotics remains an effective treatment course for IMD patients, novel therapeutics focusing on prevention or immuno-modulatory treatment would be of importance as antimicrobial resistance continues to be a problem. Not only will this generate revenue for Imperial College and Industrial partners, it will lessen the UK NHS burden due to hospitalizations due to meningococcal disease or sepsis.
Individual Impact- Patients and families with IMD or sepsis
Findings from this study will identify morbid genes in patients which will be explained to the patient. Patients will be re-contacted by an infectious disease constant as part of the BRC paediatric infectious disease clinic at St Mary's Hospital. The may also benefit from targeted treatment depending on the nature of the genetic mutation, or followed carefully by the specialty clinic to ensure proper treatment.
Organisations
- Imperial College London (Fellow, Lead Research Organisation)
- UNIVERSITY OF EDINBURGH (Collaboration)
- Rockefeller University (Collaboration)
- National Institute of Allergy and Infectious Diseases (NIAID) (Collaboration)
- Imagine Institute (Collaboration)
- Icahn School of Medicine at Mount Sinai (Collaboration)
People |
ORCID iD |
Vanessa Sancho Shimizu (Principal Investigator / Fellow) |
Publications
Asano T
(2021)
X-linked recessive TLR7 deficiency in ~1% of men under 60 years old with life-threatening COVID-19.
in Science immunology
Bastard P
(2020)
Autoantibodies against type I IFNs in patients with life-threatening COVID-19.
in Science (New York, N.Y.)
Bastard P
(2024)
Higher COVID-19 pneumonia risk associated with anti-IFN-a than with anti-IFN-? auto-Abs in children.
in The Journal of experimental medicine
Bastard P
(2021)
Autoantibodies neutralizing type I IFNs are present in ~4% of uninfected individuals over 70 years old and account for ~20% of COVID-19 deaths.
in Science immunology
Battaglini D
(2024)
Long-term neurological symptoms after acute COVID-19 illness requiring hospitalization in adult patients: insights from the ISARIC-COVID-19 follow-up study.
in Journal of neurology
Boeddha NP
(2023)
Correction to: Group A streptococcal disease in paediatric inpatients: a European perspective.
in European journal of pediatrics
Boeddha NP
(2023)
Group A streptococcal disease in paediatric inpatients: a European perspective.
in European journal of pediatrics
Bolze A
(2022)
Decoding the Human Genetic and Immunological Basis of COVID-19 mRNA Vaccine-Induced Myocarditis.
in Journal of clinical immunology
Borghesi A
(2020)
Whole-exome Sequencing for the Identification of Rare Variants in Primary Immunodeficiency Genes in Children With Sepsis: A Prospective, Population-based Cohort Study.
in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America
Description | Through this award I have been able to contribute the discoveries of new genetic aetiologies of severe COIVD19 disease and explore the molecular basis of severity in COVID19 pneumonitis. It has highlighted a particular antiviral pathway, type I IFN, as the key pathway impaired in those presenting to ICU. These can be genetic deficiencies or immune-mediated blocking of this pathway due to the presence of autoantibodies to these molecules. |
Exploitation Route | The outcomes have already had impact on clinical management of patients with severe COVID19 disease, and screening patients presenting to ICU for autoantibodies has been implemented in various countries. |
Sectors | Healthcare,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology |
Description | ISARIC - Coronavirus Clinical Characterisation Consortium (ISARIC-4C) |
Amount | £5,958,870 (GBP) |
Funding ID | MC_PC_19059 |
Organisation | Medical Research Council (MRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2020 |
End | 09/2021 |
Description | Immunologic and Predictive Features of MIS-C |
Amount | £169,136 (GBP) |
Organisation | National Institutes of Health (NIH) |
Sector | Public |
Country | United States |
Start | 07/2022 |
End | 06/2027 |
Description | The Great Britain Sasakawa Foundation Butterfield Award |
Amount | £7,400 (GBP) |
Funding ID | B133 |
Organisation | The Great Britain Sasakawa Foundation |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 03/2021 |
End | 02/2024 |
Description | UNDINE - The human genetic and immunological determinants of the clinical manifestations of SARS-CoV-2 infection: Towards personalized medicine |
Amount | £179,366 (GBP) |
Organisation | Innovate UK |
Sector | Public |
Country | United Kingdom |
Start | 06/2022 |
End | 05/2026 |
Description | Bogunovic Lab Collaboration |
Organisation | Icahn School of Medicine at Mount Sinai |
Country | United States |
Sector | Academic/University |
PI Contribution | I have contributed our expertise on autophagy analysis, patient-based cell analysis, and contribution of select infectious disease patients to understand the molecular and immunological basis to disease. |
Collaborator Contribution | The Bogunovic lab have access to patients with various immune dysregulation and expertise in deep immunophenotyping leading to the identification of new inborn errors of immunity. |
Impact | This has resulted in the following outcomes; PMID: 34363755 |
Start Year | 2021 |
Description | COVID Human Genetic Effort |
Organisation | Imagine Institute |
Country | France |
Sector | Hospitals |
PI Contribution | I am part of the steering committee as well as a member in this international consortium studying the genetics of COVID19 disease. I also am a co-lead on a subcommittee focusing on the genetics of multisytem inflamatorry disorder in children (MIS-C). |
Collaborator Contribution | This is led by my collaborators JL Casanova (Rockefeller U, USA) and Helen Su (NIAID, US) and 80 other consortia members globally who contribute patients, DNA and data. |
Impact | additional PMIDs 33904890 34413139 34413140 34524075 35090163 35104687 Publications: 1. Alessia David, Nicholas Parkinson, Thomas P Peacock, Erola Pairo-Castineira, Tarun Khanna, Aurelie Cobat, Albert Tenesa, Vanessa Sancho-Shimizu, GenOMICC Investigators, ISARIC4C Investigators, Jean-Laurent Casanova, Laurent Abel, Wendy S. Barclay, J. Kenneth Baillie, Michael JE Sternberg. A common TMPRSS2 variant protects against severe COVID-19. medRxiv March 8, 2021. doi: https://doi.org/10.1101/2021.03.04.21252931 2. Zhang, Q., P. Bastard, Z. Liu, J. Le Pen, M. Moncada-Velez, J. Chen, M. Ogishi, I.K.D. Sabli, S. Hodeib, C. Korol, J. Rosain, K. Bilguvar, J. Ye, A. Bolze, B. Bigio, R. Yang, A.A. Arias, Q. Zhou, Y. Zhang, F. Onodi, S. Korniotis, L. Karpf, Q. Philippot, M. Chbihi, L. Bonnet-Madin, K. Dorgham, N. Smith, W.M. Schneider, B.S. Razooky, H.H. Hoffmann, E. Michailidis, L. Moens, J.E. Han, L. Lorenzo, L. Bizien, P. Meade, A.L. Neehus, A.C. Ugurbil, A. Corneau, G. Kerner, P. Zhang, F. Rapaport, Y. Seeleuthner, J. Manry, C. Masson, Y. Schmitt, A. Schluter, T. Le Voyer, T. Khan, J. Li, J. Fellay, L. Roussel, M. Shahrooei, M.F. Alosaimi, D. Mansouri, H. Al-Saud, F. Al-Mulla, F. Almourfi, S.Z. Al-Muhsen, F. Alsohime, S. Al Turki, R. Hasanato, D. van de Beek, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, A.J. Oler, M.F. Tompkins, C. Alba, I. Vandernoot, J.C. Goffard, G. Smits, I. Migeotte, F. Haerynck, P. Soler-Palacin, A. Martin-Nalda, R. Colobran, P.E. Morange, S. Keles, F. Colkesen, T. Ozcelik, K.K. Yasar, S. Senoglu, S.N. Karabela, C. Rodriguez-Gallego, G. Novelli, S. Hraiech, Y. Tandjaoui-Lambiotte, X. Duval, C. Laouenan, C.-S. Clinicians, C. Clinicians, C.G. Imagine, C.C.S.G. French, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, N.-U.T.C.I. Group, A.L. Snow, C.L. Dalgard, J.D. Milner, D.C. Vinh, T.H. Mogensen, N. Marr, A.N. Spaan, B. Boisson, S. Boisson-Dupuis, J. Bustamante, A. Puel, M.J. Ciancanelli, I. Meyts, T. Maniatis, V. Soumelis, A. Amara, M. Nussenzweig, A. Garcia-Sastre, F. Krammer, A. Pujol, D. Duffy, R.P. Lifton, S.Y. Zhang, G. Gorochov, V. Beziat, E. Jouanguy, V. Sancho-Shimizu, C.M. Rice, L. Abel, L.D. Notarangelo, A. Cobat, H.C. Su and J.L. Casanova, Inborn errors of type I IFN immunity in patients with life-threatening COVID-19. Science, 2020. 370(6515). *co-second to last author 3. 14. Bastard, P., L.B. Rosen, Q. Zhang, E. Michailidis, H.H. Hoffmann, Y. Zhang, K. Dorgham, Q. Philippot, J. Rosain, V. Beziat, J. Manry, E. Shaw, L. Haljasmagi, P. Peterson, L. Lorenzo, L. Bizien, S. Trouillet-Assant, K. Dobbs, A.A. de Jesus, A. Belot, A. Kallaste, E. Catherinot, Y. Tandjaoui-Lambiotte, J. Le Pen, G. Kerner, B. Bigio, Y. Seeleuthner, R. Yang, A. Bolze, A.N. Spaan, O.M. Delmonte, M.S. Abers, A. Aiuti, G. Casari, V. Lampasona, L. Piemonti, F. Ciceri, K. Bilguvar, R.P. Lifton, M. Vasse, D.M. Smadja, M. Migaud, J. Hadjadj, B. Terrier, D. Duffy, L. Quintana-Murci, D. van de Beek, L. Roussel, D.C. Vinh, S.G. Tangye, F. Haerynck, D. Dalmau, J. Martinez-Picado, P. Brodin, M.C. Nussenzweig, S. Boisson-Dupuis, C. Rodriguez-Gallego, G. Vogt, T.H. Mogensen, A.J. Oler, J. Gu, P.D. Burbelo, J.I. Cohen, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, P. Rossignol, J. Mayaux, F. Rieux-Laucat, E.S. Husebye, F. Fusco, M.V. Ursini, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, R. Castagnoli, D. Montagna, A. Licari, G.L. Marseglia, X. Duval, J. Ghosn, H. Lab, N.-U.I.R.t.C. Group, C. Clinicians, C.-S. Clinicians, C.G. Imagine, C.C.S.G. French, C. Milieu Interieur, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, J.S. Tsang, R. Goldbach-Mansky, K. Kisand, M.S. Lionakis, A. Puel, S.Y. Zhang, S.M. Holland, G. Gorochov, E. Jouanguy, C.M. Rice, A. Cobat, L.D. Notarangelo, L. Abel, H.C. Su and J.L. Casanova, Autoantibodies against type I IFNs in patients with life-threatening COVID-19. Science, 2020. 370(6515). 4. Casanova, J.L., H.C. Su, and C.H.G. Effort, A Global Effort to Define the Human Genetics of Protective Immunity to SARS-CoV-2 Infection. Cell, 2020. 181(6): p. 1194-1199. Talk 1. WFI Infection and Immunity Seminar. Imperial College London, 26 January, 2021 2. COVID-19: Biomedical Insights Into An Evolving Epidemic (One Year Later) National University Singapore, 25 January, 2021 |
Start Year | 2020 |
Description | COVID Human Genetic Effort |
Organisation | National Institute of Allergy and Infectious Diseases (NIAID) |
Country | United States |
Sector | Public |
PI Contribution | I am part of the steering committee as well as a member in this international consortium studying the genetics of COVID19 disease. I also am a co-lead on a subcommittee focusing on the genetics of multisytem inflamatorry disorder in children (MIS-C). |
Collaborator Contribution | This is led by my collaborators JL Casanova (Rockefeller U, USA) and Helen Su (NIAID, US) and 80 other consortia members globally who contribute patients, DNA and data. |
Impact | additional PMIDs 33904890 34413139 34413140 34524075 35090163 35104687 Publications: 1. Alessia David, Nicholas Parkinson, Thomas P Peacock, Erola Pairo-Castineira, Tarun Khanna, Aurelie Cobat, Albert Tenesa, Vanessa Sancho-Shimizu, GenOMICC Investigators, ISARIC4C Investigators, Jean-Laurent Casanova, Laurent Abel, Wendy S. Barclay, J. Kenneth Baillie, Michael JE Sternberg. A common TMPRSS2 variant protects against severe COVID-19. medRxiv March 8, 2021. doi: https://doi.org/10.1101/2021.03.04.21252931 2. Zhang, Q., P. Bastard, Z. Liu, J. Le Pen, M. Moncada-Velez, J. Chen, M. Ogishi, I.K.D. Sabli, S. Hodeib, C. Korol, J. Rosain, K. Bilguvar, J. Ye, A. Bolze, B. Bigio, R. Yang, A.A. Arias, Q. Zhou, Y. Zhang, F. Onodi, S. Korniotis, L. Karpf, Q. Philippot, M. Chbihi, L. Bonnet-Madin, K. Dorgham, N. Smith, W.M. Schneider, B.S. Razooky, H.H. Hoffmann, E. Michailidis, L. Moens, J.E. Han, L. Lorenzo, L. Bizien, P. Meade, A.L. Neehus, A.C. Ugurbil, A. Corneau, G. Kerner, P. Zhang, F. Rapaport, Y. Seeleuthner, J. Manry, C. Masson, Y. Schmitt, A. Schluter, T. Le Voyer, T. Khan, J. Li, J. Fellay, L. Roussel, M. Shahrooei, M.F. Alosaimi, D. Mansouri, H. Al-Saud, F. Al-Mulla, F. Almourfi, S.Z. Al-Muhsen, F. Alsohime, S. Al Turki, R. Hasanato, D. van de Beek, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, A.J. Oler, M.F. Tompkins, C. Alba, I. Vandernoot, J.C. Goffard, G. Smits, I. Migeotte, F. Haerynck, P. Soler-Palacin, A. Martin-Nalda, R. Colobran, P.E. Morange, S. Keles, F. Colkesen, T. Ozcelik, K.K. Yasar, S. Senoglu, S.N. Karabela, C. Rodriguez-Gallego, G. Novelli, S. Hraiech, Y. Tandjaoui-Lambiotte, X. Duval, C. Laouenan, C.-S. Clinicians, C. Clinicians, C.G. Imagine, C.C.S.G. French, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, N.-U.T.C.I. Group, A.L. Snow, C.L. Dalgard, J.D. Milner, D.C. Vinh, T.H. Mogensen, N. Marr, A.N. Spaan, B. Boisson, S. Boisson-Dupuis, J. Bustamante, A. Puel, M.J. Ciancanelli, I. Meyts, T. Maniatis, V. Soumelis, A. Amara, M. Nussenzweig, A. Garcia-Sastre, F. Krammer, A. Pujol, D. Duffy, R.P. Lifton, S.Y. Zhang, G. Gorochov, V. Beziat, E. Jouanguy, V. Sancho-Shimizu, C.M. Rice, L. Abel, L.D. Notarangelo, A. Cobat, H.C. Su and J.L. Casanova, Inborn errors of type I IFN immunity in patients with life-threatening COVID-19. Science, 2020. 370(6515). *co-second to last author 3. 14. Bastard, P., L.B. Rosen, Q. Zhang, E. Michailidis, H.H. Hoffmann, Y. Zhang, K. Dorgham, Q. Philippot, J. Rosain, V. Beziat, J. Manry, E. Shaw, L. Haljasmagi, P. Peterson, L. Lorenzo, L. Bizien, S. Trouillet-Assant, K. Dobbs, A.A. de Jesus, A. Belot, A. Kallaste, E. Catherinot, Y. Tandjaoui-Lambiotte, J. Le Pen, G. Kerner, B. Bigio, Y. Seeleuthner, R. Yang, A. Bolze, A.N. Spaan, O.M. Delmonte, M.S. Abers, A. Aiuti, G. Casari, V. Lampasona, L. Piemonti, F. Ciceri, K. Bilguvar, R.P. Lifton, M. Vasse, D.M. Smadja, M. Migaud, J. Hadjadj, B. Terrier, D. Duffy, L. Quintana-Murci, D. van de Beek, L. Roussel, D.C. Vinh, S.G. Tangye, F. Haerynck, D. Dalmau, J. Martinez-Picado, P. Brodin, M.C. Nussenzweig, S. Boisson-Dupuis, C. Rodriguez-Gallego, G. Vogt, T.H. Mogensen, A.J. Oler, J. Gu, P.D. Burbelo, J.I. Cohen, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, P. Rossignol, J. Mayaux, F. Rieux-Laucat, E.S. Husebye, F. Fusco, M.V. Ursini, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, R. Castagnoli, D. Montagna, A. Licari, G.L. Marseglia, X. Duval, J. Ghosn, H. Lab, N.-U.I.R.t.C. Group, C. Clinicians, C.-S. Clinicians, C.G. Imagine, C.C.S.G. French, C. Milieu Interieur, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, J.S. Tsang, R. Goldbach-Mansky, K. Kisand, M.S. Lionakis, A. Puel, S.Y. Zhang, S.M. Holland, G. Gorochov, E. Jouanguy, C.M. Rice, A. Cobat, L.D. Notarangelo, L. Abel, H.C. Su and J.L. Casanova, Autoantibodies against type I IFNs in patients with life-threatening COVID-19. Science, 2020. 370(6515). 4. Casanova, J.L., H.C. Su, and C.H.G. Effort, A Global Effort to Define the Human Genetics of Protective Immunity to SARS-CoV-2 Infection. Cell, 2020. 181(6): p. 1194-1199. Talk 1. WFI Infection and Immunity Seminar. Imperial College London, 26 January, 2021 2. COVID-19: Biomedical Insights Into An Evolving Epidemic (One Year Later) National University Singapore, 25 January, 2021 |
Start Year | 2020 |
Description | COVID Human Genetic Effort |
Organisation | Rockefeller University |
Country | United States |
Sector | Academic/University |
PI Contribution | I am part of the steering committee as well as a member in this international consortium studying the genetics of COVID19 disease. I also am a co-lead on a subcommittee focusing on the genetics of multisytem inflamatorry disorder in children (MIS-C). |
Collaborator Contribution | This is led by my collaborators JL Casanova (Rockefeller U, USA) and Helen Su (NIAID, US) and 80 other consortia members globally who contribute patients, DNA and data. |
Impact | additional PMIDs 33904890 34413139 34413140 34524075 35090163 35104687 Publications: 1. Alessia David, Nicholas Parkinson, Thomas P Peacock, Erola Pairo-Castineira, Tarun Khanna, Aurelie Cobat, Albert Tenesa, Vanessa Sancho-Shimizu, GenOMICC Investigators, ISARIC4C Investigators, Jean-Laurent Casanova, Laurent Abel, Wendy S. Barclay, J. Kenneth Baillie, Michael JE Sternberg. A common TMPRSS2 variant protects against severe COVID-19. medRxiv March 8, 2021. doi: https://doi.org/10.1101/2021.03.04.21252931 2. Zhang, Q., P. Bastard, Z. Liu, J. Le Pen, M. Moncada-Velez, J. Chen, M. Ogishi, I.K.D. Sabli, S. Hodeib, C. Korol, J. Rosain, K. Bilguvar, J. Ye, A. Bolze, B. Bigio, R. Yang, A.A. Arias, Q. Zhou, Y. Zhang, F. Onodi, S. Korniotis, L. Karpf, Q. Philippot, M. Chbihi, L. Bonnet-Madin, K. Dorgham, N. Smith, W.M. Schneider, B.S. Razooky, H.H. Hoffmann, E. Michailidis, L. Moens, J.E. Han, L. Lorenzo, L. Bizien, P. Meade, A.L. Neehus, A.C. Ugurbil, A. Corneau, G. Kerner, P. Zhang, F. Rapaport, Y. Seeleuthner, J. Manry, C. Masson, Y. Schmitt, A. Schluter, T. Le Voyer, T. Khan, J. Li, J. Fellay, L. Roussel, M. Shahrooei, M.F. Alosaimi, D. Mansouri, H. Al-Saud, F. Al-Mulla, F. Almourfi, S.Z. Al-Muhsen, F. Alsohime, S. Al Turki, R. Hasanato, D. van de Beek, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, A.J. Oler, M.F. Tompkins, C. Alba, I. Vandernoot, J.C. Goffard, G. Smits, I. Migeotte, F. Haerynck, P. Soler-Palacin, A. Martin-Nalda, R. Colobran, P.E. Morange, S. Keles, F. Colkesen, T. Ozcelik, K.K. Yasar, S. Senoglu, S.N. Karabela, C. Rodriguez-Gallego, G. Novelli, S. Hraiech, Y. Tandjaoui-Lambiotte, X. Duval, C. Laouenan, C.-S. Clinicians, C. Clinicians, C.G. Imagine, C.C.S.G. French, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, N.-U.T.C.I. Group, A.L. Snow, C.L. Dalgard, J.D. Milner, D.C. Vinh, T.H. Mogensen, N. Marr, A.N. Spaan, B. Boisson, S. Boisson-Dupuis, J. Bustamante, A. Puel, M.J. Ciancanelli, I. Meyts, T. Maniatis, V. Soumelis, A. Amara, M. Nussenzweig, A. Garcia-Sastre, F. Krammer, A. Pujol, D. Duffy, R.P. Lifton, S.Y. Zhang, G. Gorochov, V. Beziat, E. Jouanguy, V. Sancho-Shimizu, C.M. Rice, L. Abel, L.D. Notarangelo, A. Cobat, H.C. Su and J.L. Casanova, Inborn errors of type I IFN immunity in patients with life-threatening COVID-19. Science, 2020. 370(6515). *co-second to last author 3. 14. Bastard, P., L.B. Rosen, Q. Zhang, E. Michailidis, H.H. Hoffmann, Y. Zhang, K. Dorgham, Q. Philippot, J. Rosain, V. Beziat, J. Manry, E. Shaw, L. Haljasmagi, P. Peterson, L. Lorenzo, L. Bizien, S. Trouillet-Assant, K. Dobbs, A.A. de Jesus, A. Belot, A. Kallaste, E. Catherinot, Y. Tandjaoui-Lambiotte, J. Le Pen, G. Kerner, B. Bigio, Y. Seeleuthner, R. Yang, A. Bolze, A.N. Spaan, O.M. Delmonte, M.S. Abers, A. Aiuti, G. Casari, V. Lampasona, L. Piemonti, F. Ciceri, K. Bilguvar, R.P. Lifton, M. Vasse, D.M. Smadja, M. Migaud, J. Hadjadj, B. Terrier, D. Duffy, L. Quintana-Murci, D. van de Beek, L. Roussel, D.C. Vinh, S.G. Tangye, F. Haerynck, D. Dalmau, J. Martinez-Picado, P. Brodin, M.C. Nussenzweig, S. Boisson-Dupuis, C. Rodriguez-Gallego, G. Vogt, T.H. Mogensen, A.J. Oler, J. Gu, P.D. Burbelo, J.I. Cohen, A. Biondi, L.R. Bettini, M. D'Angio, P. Bonfanti, P. Rossignol, J. Mayaux, F. Rieux-Laucat, E.S. Husebye, F. Fusco, M.V. Ursini, L. Imberti, A. Sottini, S. Paghera, E. Quiros-Roldan, C. Rossi, R. Castagnoli, D. Montagna, A. Licari, G.L. Marseglia, X. Duval, J. Ghosn, H. Lab, N.-U.I.R.t.C. Group, C. Clinicians, C.-S. Clinicians, C.G. Imagine, C.C.S.G. French, C. Milieu Interieur, V.C.C. Co, U.M.C.C.-B. Amsterdam, C.H.G. Effort, J.S. Tsang, R. Goldbach-Mansky, K. Kisand, M.S. Lionakis, A. Puel, S.Y. Zhang, S.M. Holland, G. Gorochov, E. Jouanguy, C.M. Rice, A. Cobat, L.D. Notarangelo, L. Abel, H.C. Su and J.L. Casanova, Autoantibodies against type I IFNs in patients with life-threatening COVID-19. Science, 2020. 370(6515). 4. Casanova, J.L., H.C. Su, and C.H.G. Effort, A Global Effort to Define the Human Genetics of Protective Immunity to SARS-CoV-2 Infection. Cell, 2020. 181(6): p. 1194-1199. Talk 1. WFI Infection and Immunity Seminar. Imperial College London, 26 January, 2021 2. COVID-19: Biomedical Insights Into An Evolving Epidemic (One Year Later) National University Singapore, 25 January, 2021 |
Start Year | 2020 |
Description | ISARI-4C |
Organisation | University of Edinburgh |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We will study the rare genetic variation underlying critical COVID19 disease |
Collaborator Contribution | The study is led by Kenny Baillie (Univ Edinbourgh) Calum Semple (Univ Liverpool) and Peter Oppenshaw (Imperial College London) and they are leading the recruitment of all COVID19 infected individuals as well as studies around transmission, immune response, and genetics susceptbitly. |
Impact | Additional PMIDs 35081335, 34911741, 34812731, 34810237, 34729465, 34686560, 34661677, 34619109, 34274064, 34237774, 34170486, 34107928, 34100002, 34000238, 33997800, 33676593, 33444539, PUblications: 1. Davies, N.G., R.C. Barnard, C.I. Jarvis, T.W. Russell, M.G. Semple, M. Jit, W.J. Edmunds, C.-W.G. Centre for Mathematical Modelling of Infectious Diseases, and I.C. investigators, Association of tiered restrictions and a second lockdown with COVID-19 deaths and hospital admissions in England: a modelling study. Lancet Infect Dis, 2020. 2. Docherty, A.B., E.M. Harrison, C.A. Green, H.E. Hardwick, R. Pius, L. Norman, K.A. Holden, J.M. Read, F. Dondelinger, G. Carson, L. Merson, J. Lee, D. Plotkin, L. Sigfrid, S. Halpin, C. Jackson, C. Gamble, P.W. Horby, J.S. Nguyen-Van-Tam, A. Ho, C.D. Russell, J. Dunning, P.J. Openshaw, J.K. Baillie, M.G. Semple, and I.C. investigators, Features of 20 133 UK patients in hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: prospective observational cohort study. BMJ, 2020. 369: p. m1985. 3. Drake, T.M., A.B. Docherty, E.M. Harrison, J.K. Quint, H. Adamali, S. Agnew, S. Babu, C.M. Barber, S. Barratt, E. Bendstrup, S. Bianchi, D.C. Villegas, N. Chaudhuri, F. Chua, R. Coker, W. Chang, A. Crawshaw, L.E. Crowley, D. Dosanjh, C.A. Fiddler, I.A. Forrest, P.M. George, M.A. Gibbons, K. Groom, S. Haney, S.P. Hart, E. Heiden, M. Henry, L.P. Ho, R.K. Hoyles, J. Hutchinson, K. Hurley, M. Jones, S. Jones, M. Kokosi, M. Kreuter, L.S. MacKay, S. Mahendran, G. Margaritopoulos, M. Molina-Molina, P.L. Molyneaux, A. O'Brien, K. O'Reilly, A. Packham, H. Parfrey, V. Poletti, J.C. Porter, E. Renzoni, P. Rivera-Ortega, A.M. Russell, G. Saini, L.G. Spencer, G.M. Stella, H. Stone, S. Sturney, D. Thickett, M. Thillai, T. Wallis, K. Ward, A.U. Wells, A. West, M. Wickremasinghe, F. Woodhead, G. Hearson, L. Howard, J.K. Baillie, P.J.M. Openshaw, M.G. Semple, I. Stewart, R.G. Jenkins, and I.C. Investigators, Outcome of Hospitalization for COVID-19 in Patients with Interstitial Lung Disease. An International Multicenter Study. Am J Respir Crit Care Med, 2020. 202(12): p. 1656-1665. 4. Gupta, R.K., E.M. Harrison, A. Ho, A.B. Docherty, S.R. Knight, M. van Smeden, I. Abubakar, M. Lipman, M. Quartagno, R. Pius, I. Buchan, G. Carson, T.M. Drake, J. Dunning, C.J. Fairfield, C. Gamble, C.A. Green, S. Halpin, H.E. Hardwick, K.A. Holden, P.W. Horby, C. Jackson, K.A. McLean, L. Merson, J.S. Nguyen-Van-Tam, L. Norman, P.L. Olliaro, M.G. Pritchard, C.D. Russell, J. Scott-Brown, C.A. Shaw, A. Sheikh, T. Solomon, C. Sudlow, O.V. Swann, L. Turtle, P.J.M. Openshaw, J.K. Baillie, M.G. Semple, M. Noursadeghi, and I.C. Investigators, Development and validation of the ISARIC 4C Deterioration model for adults hospitalised with COVID-19: a prospective cohort study. Lancet Respir Med, 2021. 5. Huls, A., A.C.S. Costa, M. Dierssen, R.A. Baksh, S. Bargagna, N.T. Baumer, A.C. Brandao, A. Carfi, M. Carmona-Iragui, B.A. Chicoine, S. Ghosh, M. Lakhanpaul, C. Manso, M.A. Mayer, M.D.C. Ortega, D.R. de Asua, A.S. Rebillat, L.A. Russell, G. Sgandurra, D. Valentini, S.L. Sherman, A. Strydom, and T.R.C.-. Initiative, Medical vulnerability of individuals with Down syndrome to severe COVID-19-data from the Trisomy 21 Research Society and the UK ISARIC4C survey. EClinicalMedicine, 2021: p. 100769. 6. Knight, S.R., A. Ho, R. Pius, I. Buchan, G. Carson, T.M. Drake, J. Dunning, C.J. Fairfield, C. Gamble, C.A. Green, R. Gupta, S. Halpin, H.E. Hardwick, K.A. Holden, P.W. Horby, C. Jackson, K.A. McLean, L. Merson, J.S. Nguyen-Van-Tam, L. Norman, M. Noursadeghi, P.L. Olliaro, M.G. Pritchard, C.D. Russell, C.A. Shaw, A. Sheikh, T. Solomon, C. Sudlow, O.V. Swann, L.C. Turtle, P.J. Openshaw, J.K. Baillie, M.G. Semple, A.B. Docherty, E.M. Harrison, and I.C. investigators, Risk stratification of patients admitted to hospital with covid-19 using the ISARIC WHO Clinical Characterisation Protocol: development and validation of the 4C Mortality Score. BMJ, 2020. 370: p. m3339. 7. Pairo-Castineira, E., S. Clohisey, L. Klaric, A.D. Bretherick, K. Rawlik, D. Pasko, S. Walker, N. Parkinson, M.H. Fourman, C.D. Russell, J. Furniss, A. Richmond, E. Gountouna, N. Wrobel, D. Harrison, B. Wang, Y. Wu, A. Meynert, F. Griffiths, W. Oosthuyzen, A. Kousathanas, L. Moutsianas, Z. Yang, R. Zhai, C. Zheng, G. Grimes, R. Beale, J. Millar, B. Shih, S. Keating, M. Zechner, C. Haley, D.J. Porteous, C. Hayward, J. Yang, J. Knight, C. Summers, M. Shankar-Hari, P. Klenerman, L. Turtle, A. Ho, S.C. Moore, C. Hinds, P. Horby, A. Nichol, D. Maslove, L. Ling, D. McAuley, H. Montgomery, T. Walsh, A.C. Pereira, A. Renieri, O.I. Gen, I.C. Investigators, C.-H.G. Initiative, I. andMe, B. Investigators, C.I. Gen, X. Shen, C.P. Ponting, A. Fawkes, A. Tenesa, M. Caulfield, R. Scott, K. Rowan, L. Murphy, P.J.M. Openshaw, M.G. Semple, A. Law, V. Vitart, J.F. Wilson, and J.K. Baillie, Genetic mechanisms of critical illness in COVID-19. Nature, 2021. 591(7848): p. 92-98. 8. Peng, Y., A.J. Mentzer, G. Liu, X. Yao, Z. Yin, D. Dong, W. Dejnirattisai, T. Rostron, P. Supasa, C. Liu, C. Lopez-Camacho, J. Slon-Campos, Y. Zhao, D.I. Stuart, G.C. Paesen, J.M. Grimes, A.A. Antson, O.W. Bayfield, D. Hawkins, D.S. Ker, B. Wang, L. Turtle, K. Subramaniam, P. Thomson, P. Zhang, C. Dold, J. Ratcliff, P. Simmonds, T. de Silva, P. Sopp, D. Wellington, U. Rajapaksa, Y.L. Chen, M. Salio, G. Napolitani, W. Paes, P. Borrow, B.M. Kessler, J.W. Fry, N.F. Schwabe, M.G. Semple, J.K. Baillie, S.C. Moore, P.J.M. Openshaw, M.A. Ansari, S. Dunachie, E. Barnes, J. Frater, G. Kerr, P. Goulder, T. Lockett, R. Levin, Y. Zhang, R. Jing, L.P. Ho, T.c.C. Oxford Immunology Network Covid-19 Response, I.C. Investigators, R.J. Cornall, C.P. Conlon, P. Klenerman, G.R. Screaton, J. Mongkolsapaya, A. McMichael, J.C. Knight, G. Ogg, and T. Dong, Broad and strong memory CD4(+) and CD8(+) T cells induced by SARS-CoV-2 in UK convalescent individuals following COVID-19. Nat Immunol, 2020. 21(11): p. 1336-1345. 9. Swann, O.V., K.A. Holden, L. Turtle, L. Pollock, C.J. Fairfield, T.M. Drake, S. Seth, C. Egan, H.E. Hardwick, S. Halpin, M. Girvan, C. Donohue, M. Pritchard, L.B. Patel, S. Ladhani, L. Sigfrid, I.P. Sinha, P.L. Olliaro, J.S. Nguyen-Van-Tam, P.W. Horby, L. Merson, G. Carson, J. Dunning, P.J.M. Openshaw, J.K. Baillie, E.M. Harrison, A.B. Docherty, M.G. Semple, and I.C. Investigators, Clinical characteristics of children and young people admitted to hospital with covid-19 in United Kingdom: prospective multicentre observational cohort study. BMJ, 2020. 370: p. m3249. 10. Thompson, C.P., N.E. Grayson, R.S. Paton, J.S. Bolton, J. Lourenco, B.S. Penman, L.N. Lee, V. Odon, J. Mongkolsapaya, S. Chinnakannan, W. Dejnirattisai, M. Edmans, A. Fyfe, C. Imlach, K. Kooblall, N. Lim, C. Liu, C. Lopez-Camacho, C. McInally, A.L. McNaughton, N. Ramamurthy, J. Ratcliff, P. Supasa, O. Sampson, B. Wang, A.J. Mentzer, M. Turner, M.G. Semple, K. Baillie, I.C. Investigators, H. Harvala, G.R. Screaton, N. Temperton, P. Klenerman, L.M. Jarvis, S. Gupta, and P. Simmonds, Detection of neutralising antibodies to SARS-CoV-2 to determine population exposure in Scottish blood donors between March and May 2020. Euro Surveill, 2020. 25(42). 11. Thomson, E.C., L.E. Rosen, J.G. Shepherd, R. Spreafico, A. da Silva Filipe, J.A. Wojcechowskyj, C. Davis, L. Piccoli, D.J. Pascall, J. Dillen, S. Lytras, N. Czudnochowski, R. Shah, M. Meury, N. Jesudason, A. De Marco, K. Li, J. Bassi, A. O'Toole, D. Pinto, R.M. Colquhoun, K. Culap, B. Jackson, F. Zatta, A. Rambaut, S. Jaconi, V.B. Sreenu, J. Nix, I. Zhang, R.F. Jarrett, W.G. Glass, M. Beltramello, K. Nomikou, M. Pizzuto, L. Tong, E. Cameroni, T.I. Croll, N. Johnson, J. Di Iulio, A. Wickenhagen, A. Ceschi, A.M. Harbison, D. Mair, P. Ferrari, K. Smollett, F. Sallusto, S. Carmichael, C. Garzoni, J. Nichols, M. Galli, J. Hughes, A. Riva, A. Ho, M. Schiuma, M.G. Semple, P.J.M. Openshaw, E. Fadda, J.K. Baillie, J.D. Chodera, I.C. Investigators, C.-G.U. Consortium, S.J. Rihn, S.J. Lycett, H.W. Virgin, A. Telenti, D. Corti, D.L. Robertson, and G. Snell, Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity. Cell, 2021. 184(5): p. 1171-1187 e20. 12. Bloom, C.I., T.M. Drake, A.B. Docherty, B.J. Lipworth, S.L. Johnston, J.S. Nguyen-Van-Tam, G. Carson, J. Dunning, E.M. Harrison, J.K. Baillie, M.G. Semple, P. Cullinan, P.J.M. Openshaw, and I. investigators, Risk of adverse outcomes in patients with underlying respiratory conditions admitted to hospital with COVID-19: a national, multicentre prospective cohort study using the ISARIC WHO Clinical Characterisation Protocol UK. Lancet Respir Med, 2021. Press engagements • Times radio Breakfast morning show- Genetics of COVID19 (Live interview Dec 19,2020) • Nature Briefing - https://www.nature.com/articles/d41586-020-03589-3; Dec 15,2020 • BBC 10oclock news - https://youtu.be/iDRP_zbdixU ;Dec 11, 2020 • BBC news (online) - https://www.bbc.co.uk/news/health-54832563 Dec 11,2020 Talks 1. Critical Care Reviews Editorial Presentation on the GENOMICC Study. January 22, 2021. https://criticalcarereviews.com/index.php/eccr21 |
Start Year | 2020 |
Description | BBC 10oclock news December 11, 2020 |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | interview on the genetics of COVID19 |
Year(s) Of Engagement Activity | 2020 |
URL | https://youtu.be/iDRP_zbdixU |
Description | BBC One Morning Live show - face coverings October 26, 2020 |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Media (as a channel to the public) |
Results and Impact | interview on the efficacy of difference face coverings and COVID19 |
Year(s) Of Engagement Activity | 2020 |
URL | https://www.bbc.co.uk/iplayer/episode/m000nxq8/morning-live-series-1-26102020 |
Description | BBC One morning live show _Face masks November 2, 2020 |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | Interview on face masks and COVID19 on the BBC One morning show |
Year(s) Of Engagement Activity | 2020 |
Description | BBC Radio Belfast interview October 26, 2020 |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Live interview on BBC radio Belfast on face masks and COVID19. |
Year(s) Of Engagement Activity | 2020 |
Description | BBC news online April 1, 2020 |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | interview on severity of COVID19 and children |
Year(s) Of Engagement Activity | 2020 |
URL | https://www.bbc.co.uk/news/uk-52114476 |
Description | BBC news online December 11, 2020 |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | comment on the genetics of COVID19. |
Year(s) Of Engagement Activity | 2020,2021 |
URL | https://www.bbc.co.uk/news/health-54832563 |
Description | Barlby Primary School Science week |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | Discussed the importance of hand washing to prevent illness and infection but sampling and growing bugs on the hands of primary school children. over 100 children attended and 30 children participated in the sampling. This sparked a discussion about infection and how to wash hands properly, created awareness of how to prevent spread of infection. The children reported interest in the subject and said they would now wash their hands for at least 20seconds. |
Year(s) Of Engagement Activity | 2021 |
URL | https://twitter.com/primary_barlby/status/1465676581653946373 |
Description | Caterine McEwan Facebook Live COVID19 Vaccines Q & A |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Over 150 patients with IBD and their families attended the Facebook Live event on understanding the impact of COVID19 vaccines. This was an interactive workshop mainly driven by the questions the audience had. |
Year(s) Of Engagement Activity | 2021 |
Description | Hope Montessori - What is coronavirus |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | To inform children 2-4yrs of age on what the coronavirus is and on COVID19. |
Year(s) Of Engagement Activity | 2020 |
Description | ITV News interview April 1, 2020 |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Interview on the severity of COVID19 and in children. |
Year(s) Of Engagement Activity | 2020 |
Description | Nature briefing on Genetics of COVID19 |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Briefing and commentary on the genetics of COVID19 |
Year(s) Of Engagement Activity | 2020 |
URL | https://www.bbc.co.uk/news/health-54832563 |
Description | Project BEAM Ka Pilina No'eau, Hawaii - 'What is COVID19' |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Schools |
Results and Impact | Presentation to inform children 6-12yrs with learning disabilities about coronivrus and covid19. |
Year(s) Of Engagement Activity | 2020 |
Description | Science talk to North London Collegiate School Science Cafe |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | 30 6th form students attended a talk i gave on genetic research which sparked questions around genetics and a career in science. I got excellent feedback from teachers after the event claiming students interest in genetic testing. |
Year(s) Of Engagement Activity | 2021 |
Description | Times radio Breakfast morning show December 19, 2020 |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Live radio interview on the genetics of COVID19. |
Year(s) Of Engagement Activity | 2020 |