KC Jambo, Malawi College of Medicine - Defining changes in nasal immunity that favour propensity for pneumococcal colonisation in HIV-infected adults
Lead Research Organisation:
Liverpool School of Tropical Medicine
Department Name: Clinical Sciences
Abstract
The bacterium, Streptococcus pneumoniae (pneumococcus), is the major cause of pneumonia-related deaths worldwide. The pneumococcus resides in the nose and at the back of the throat, where it does not normally cause disease, but when conditions change it causes life-threatening illness, such as pneumonia. The pneumococcus is transmitted from person to person via the respiratory route. In Europe and North America, immunisation of children with the pneumococcal conjugate vaccine (PCV13) has greatly reduced the burden of pneumococcal disease and prevalence of the pneumococcus in the community because children no longer infect adults. Similar impact has not been observed in low income countries, such as Malawi, because children continue to carry pneumococci even after vaccination. Instead, the prevalence of the pneumococcus among HIV-infected adults on antiretroviral therapy (ART) has remained high despite the introduction of PCV13 as routine childhood vaccine in Malawi in 2011. Persistence of pneumococcus among HIV-infected adults on ART threatens to reverse the potential public health benefits of PCV13 that have been reported from high income countries. HIV-infected adults on ART serve as a haven for pneumococcus and may promote transmission of the bacterium in the community. However, the factors that promote persistence of pneumococcus among HIV-infected adults on ART are still unknown. I propose to recruit 100 Malawian adults, of which half will be HIV-uninfected and the other half will be ART-naïve HIV-infected. I will collect samples from the nose from all study participants and follow them up for 12months. I will quantify the number of times an individual is found with the pneumococcus in their nose, and compare this between the study groups. I will also investigate differences in immune parameters in the nose between the study groups. This comparison will also focus on relating the changes in the immune parameters in the nose with the number of times an individual is found with the pneumococcus in their nose. This will generate information on some of the factors that make HIV-infected infected adults on ART more susceptible to the pneumococcus. Furthermore, I will grow cells obtained from the nose of HIV-infected and uninfected adults in laboratory to generate a deeper understanding of how they interact with pneumococcus. I anticipate that this research study will will improve current understanding of why the pneumococcus is persistently found among HIV-infected adults on ART. This work will allow choices in optimal therapy against HIV and optimal vaccination strategies against pneumococcus, that could significantly impact pneumococcal transmission and disease in high transmission settings.
Technical Summary
Streptococcus pneumoniae is a leading cause of morbidity and mortality in infants, immunocompromised individuals and the elderly. Pneumococcal carriage precedes disease and is important for transmission. Surveillance data from Malawi demonstrates persistently high pneumococcal carriage among antiretroviral therapy (ART)-experienced HIV-infected adults despite the introduction of pneumococcal conjugate vaccine (PCV)13 vaccine as routine childhood vaccine in Malawi in 2011, implying that the herd immunity benefits of vaccination are not robust in this setting. Due to the implementation of HIV "test and treat" strategy, the number of HIV-infected adults on ART will expand tremendously over the next 10 years. An increase in the pneumococcal transmission reservoir will threaten the public health benefits of pneumococcal vaccination. The factors behind this persistently high pneumococcal carriage remain unknown. I hypothesise that dysregulated local nasal innate immunity promotes increased propensity to pneumococcal carriage in HIV-infected adults. I propose to recruit 50 HIV-uninfected and 50 ART-naïve HIV-infected adults, and follow them up for 12 months. Nasopharyngeal swabs and nasosorption samples will be collected monthly, while blood and nasal cells will also be collected at recruitment and 12 months. As per national "test and treat" guidelines, all ART-naïve HIV-infected individuals will be initiated on ART. Pneumococcal carriage incidence will be compared between the study groups. Experiments will investigate the relationship between cytokine profiles, nasal cell phenotypes and nasal transcriptome signatures to pneumococcal carriage incidences. This work will generate information that will allow choices in optimal HIV therapy and optimal vaccination strategies to impact pneumococcal transmission and disease in high transmission settings.
Planned Impact
The proposed research will benefit HIV-infected adults, researchers, policymakers, and the community at large. For HIV-infected adults, an understanding of the HIV-mediated perturbations in the nasal mucosa and the degree to which they are impacted by antiretroviral therapy, will allow choices in optimal HIV therapy and optimal vaccination strategies that could help restore nasal immunity and subsequently reduce the burden of respiratory infections in this population. Anti-retroviral therapy (ART) has been a tremendous success but it is now widely accepted that other interventions to augment ART are needed to sustain and improve the gains made by this life-saving intervention. For the researchers, the findings of this study will enhance our knowledge of HIV-mediated perturbations in the nasal mucosa that lead to persistently high prevalence of pneumococcal carriage in HIV-infected adults on antiretroviral therapy. Furthermore, this research study has a PhD studentship built into it, which provides an excellent opportunity to contribute to the training of the next generation of research scientists in Africa. For policymakers, findings from this study will provide further evidence to support introduction of interventions targeting HIV-infected adults on ART, to reduce pneumococcal transmission and subsequent pneumococcal disease. Vaccines targeting the rapidly-expanding population of HIV-infected adults on ART, who are a potential source of pneumococcal transmission are urgently needed. For the community, knowledge gained from this research study will contribute to development of novel interventions to control pneumococcal transmission and disease in the community. A reduction in pneumococcal transmission and disease is an important goal for improving the health of people living in high disease burden settings, like Malawi. This will translate into healthy and economically-productive communities. Every life counts.
Publications

Anscombe C
(2023)
A comparison of four epidemic waves of COVID-19 in Malawi; an observational cohort study.
in BMC infectious diseases

Anscombe C
(2022)
A comparison of four epidemic waves of COVID-19 in Malawi; an observational cohort study.
in medRxiv : the preprint server for health sciences



Bwire G
(2022)
The COVID-19 pandemic in the African continent.
in BMC medicine

Chibwana M
(2020)
High SARS-CoV-2 seroprevalence in health care workers but relatively low numbers of deaths in urban Malawi
in Wellcome Open Research

Chibwana M
(2020)
High SARS-CoV-2 seroprevalence in health care workers but relatively low numbers of deaths in urban Malawi
in Wellcome Open Research

Chibwana M
(2023)
Different clinical features in Malawian outpatients presenting with COVID-19 prior to and during Omicron variant dominance: A prospective observational study
in PLOS Global Public Health


Chibwana MG
(2020)
High SARS-CoV-2 seroprevalence in health care workers but relatively low numbers of deaths in urban Malawi.
in medRxiv : the preprint server for health sciences
Guideline Title | Crafting the mosaic" A framework for resilient surveillance for respiratory viruses of epidemic and pandemic potential |
Description | Citation "Crafting the mosaic" A framework for resilient surveillance for respiratory viruses of epidemic and pandemic potential |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Citation in clinical guidelines |
URL | https://iris.who.int/bitstream/handle/10665/366689/9789240070288-eng.pdf?sequence=1 |
Description | Citation World Bank 01/12/2021 |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Citation in other policy documents |
URL | http://documents.worldbank.org/curated/en/099505012202128779/pdf/P1750200ec25370fa08b4205261a47aa4ce... |
Description | Global Citizen Live 2021 |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Participation in a guidance/advisory committee |
Impact | Speaker at Global Citizen Live 2021. Media recording to inform general public to inform on the impact of vaccinations. |
URL | https://www.globalcitizen.org/en/live/ |
Description | NOSEVAC VACCINE |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Contribution to new or improved professional practice |
Impact | Attended a meeting to further develop collaboration and partnership in vaccine development. This supported the development of policy, practice and clinical trials. |
Description | The European Regional Development Fund (ERDF) webinar |
Geographic Reach | Europe |
Policy Influence Type | Participation in a guidance/advisory committee |
Impact | Contributed to discussions on vaccine development and roll out with the context of supporting the European Regional Development Fund. |
Description | Westminster Health Forum policy conference |
Geographic Reach | National |
Policy Influence Type | Implementation circular/rapid advice/letter to e.g. Ministry of Health |
Impact | Attended forum to contribute to government healthcare policy and to vaccine development in the UK. The forum encourages further scientific collaboration, partnership and provides networking opportunities for scientists to the benefit of practice, public healthcare outcomes and policy development. |
Description | Oxford Vaccine Group |
Organisation | University of Oxford |
Department | Department of Paediatrics |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | In 2022 Professor Daniela Ferreira established a joint Institutional research group. Based across Oxford University, Department of Paediatrics and Liverpool School Of Tropical Medicine, Department of Clinical Science's. This partnership will encourage scientific collaboration and enable researchers and students to share expertise and skills to the benefit of both research institutions. |
Collaborator Contribution | This collaboration with Oxford University has allowed for group members to benefit from increased training , intellectual input and mentoring opportunities. This also includes access to additional facilities and equipment to support research outputs. |
Impact | Given this institutional collaboration commenced in July 2022. Outputs and outcomes resulting from this collaboration and partnership will be shared in the 2024 annual submission. |
Start Year | 2022 |
Description | Australian Society for Microbiology |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Speaker at the Australian Society for Microbiology. Resulted in increased collaboration and development of international scientific partnerships. |
Year(s) Of Engagement Activity | 2021 |
Description | BALR 2022 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | Research Group hosted BALR 2022 in Liverpool LSTM to support early career researchers, and encourage further scientific partnership and collaboration. |
Year(s) Of Engagement Activity | 2022 |
Description | Conference British Association for Lung Research (BALR) 2021 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | British Association for Lung Research (BALR) 2021 Conference at the University of Exeter on 24 and 25 June 2021 (Katerina attended on Zoom). Katerina presented a poster entitled A novel multiplex assay using Luminex xMAP technology to screen for pneumococcal vaccine candidates. |
Year(s) Of Engagement Activity | 2021 |
Description | Conference Talk |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Daniela ferreira presented about how Pneumococcal carriage dampens immune response to repiratory virus. This talk was part of a conference aiming to discuss the "evolving understanding of the causes of pneumonia in adults" |
Year(s) Of Engagement Activity | 2022 |
Description | Europneumo Liverpool 2022 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Speaker at Europneumo Liverpool 2022 . Resulted in increased collaboration and development of international scientific partnerships. |
Year(s) Of Engagement Activity | 2022 |
Description | Evolving understanding of the causes of pneumonia in adults ( Pfizer ) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Industry business partners and scientific collaborators attended this meeting to further collaboration and partnership, this engagement resulted in discussion and plans to develop the programme. |
Year(s) Of Engagement Activity | 2021 |
Description | FIS / HIS conference London 2022 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | FIS / HIS conference Speaker 2022. Resulted in increased collaboration and development of international scientific partnerships. |
Year(s) Of Engagement Activity | 2022 |
Description | HIC VAC meeting |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | Spoke at this conference. Resulted in increased collaboration and development of scientific partnerships. |
Year(s) Of Engagement Activity | 2021 |
Description | Hic vac annual meeting 2022 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Speaker at Hic Vav 2022. Resulted in increased collaboration and development of international scientific partnerships. |
Year(s) Of Engagement Activity | 2022 |
Description | IDRF London 2022 |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | Chair at IDRF London 2022. Resulted in increased collaboration and development of international scientific partnerships. |
Year(s) Of Engagement Activity | 2022 |
Description | ISPPD Society & Webinar on Pneumococcus & COVID-1 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Postgraduate students |
Results and Impact | Speaker at ISPPD Society & Webinar on Pneumococcus & COVID-1. Resulted in increased collaboration and development of international scientific partnerships. |
Year(s) Of Engagement Activity | 2021 |
Description | ISPPD Society Toronto 2022 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Speaker at ISPDD Toronto 2022. Resulted in increased collaboration and development of international scientific partnerships. |
Year(s) Of Engagement Activity | 2022 |
Description | Joint Pediatric SASS |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Joint Pediatric SASS Madrid 2022. Industry and internal business partners attended this confernece to further collaboration and partnership, this engagement resulted in increased interest in the programme. |
Year(s) Of Engagement Activity | 2022 |
Description | MSD EMEAC Pneumo SASS - live session |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Industry and internal business partners attended this meeting to further collaboration and partnership, this engagement resulted in increased interest in the programme |
Year(s) Of Engagement Activity | 2021 |
Description | Merck Vaccinology Conference 2022 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Industry and internal business partners attended a workshop to further collaboration and partnership, this engagement resulted in increased interest in the programme. |
Year(s) Of Engagement Activity | 2022 |
Description | NOSEVAC VACCINE |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Industry and internal business partners attended a workshop to further collaboration and partnership, this engagement resulted in increased interest in the programme. |
Year(s) Of Engagement Activity | 2021 |
Description | Sanofi Pasteur Virtual RSV Advisory Board |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Industry and internal business partners attended a workshop to further collaboration and partnership, this engagement resulted in increased interest in the programme. |
Year(s) Of Engagement Activity | 2021 |
Description | Sanofi monoclonal study |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | Spoke and attended conference. Resulted in increased collaboration and development of scientific partnerships. |
Year(s) Of Engagement Activity | 2021,2022 |
Description | UKRI - filming of the iiCON programme |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Media recording to inform and update Industry, business partners and general public to report on the programme and encourage further collaboration partnership. This engagement resulted in wider interest, participation and promotion in the programme. |
Year(s) Of Engagement Activity | 2021 |
Description | Vaccines Liverpool HPO Workshop |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | Industry and internal business partners attended a workshop to further collaboration and partnership, this engagement resulted in increased interest in the programme |
Year(s) Of Engagement Activity | 2021 |
Description | Wellcome Trust |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Industry and internal business partners attended a workshop to further collaboration and partnership, this engagement resulted in increased interest in the programme. |
Year(s) Of Engagement Activity | 2022 |
Description | iiCON: Clinical Trial Campaign |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Media campaign on clinical trial to inform and update Industry, business partners and general public to report on the programme and encourage further collaboration partnership. This engagement resulted in wider interest, participation and promotion in the programme. |
Year(s) Of Engagement Activity | 2021 |