The Role of the Extracellular Immunoproteasome in Acute Respiratory Distress Syndrome
Lead Research Organisation:
Queen's University Belfast
Department Name: Sch of Medicine, Dentistry & Biomed Sci
Abstract
During an infection the body normally responds by mounting an immune response. This generally involves the recruitment of white blood cells that play a role in removing the invading organism. In some cases of disease, excess numbers of cells arrive in significant numbers to the lung, and other organ sites, not as result of infection but, as a result of a poorly-defined inflammatory process. When they arrive at the lung these cells become involved in causing damage to the lung tissue. We have uncovered a recently described protein, the Extracellular Immunoproteasome, which may play role in bringing, or attracting, damaging levels of these inflammatory cells to the lung. In addition, we propose that the Extracellular Immunoproteasome in the lung may bring these inflammatory cells to the lung by activating another group of proteins, called protease activated receptors (PARs), in the lung. We will confirm our proposal by using a combination of models to confirm a role for Extracellular Immunoproteasome in inflammatory cell recruitment. The very clear application of this study is in the targeting of Extracellular Immunoproteasome to regulate lung damage and lung injury in disease, although there is a potential role for this Extracellular Immunoproteasome -mediated pathway in other disease processes including inflammatory disorders. To this end, we have a developed a very specific inhibitor of the Extracellular Immunoproteasome which is much more specific for the immunoproteasome than other therapeutic proteasome inhibitors. Future studies looking at the clinical evaluation of Extracellular Immunoproteasome inhibitors in lung disease is a very real possibility as we are set-up to carry out such studies in Queen's Belfast as part of the UK Respiratory Translational Research Partnership.
Technical Summary
Inflammatory cell recruitment to sites of infection is a common and necessary process to remove bacteria in the lung. In some cases of disease, neutrophils arrive in significant numbers to the lung, and other organ sites, not as result of infection but as a result of a poorly-defined inflammatory process. In the case of acute lung inflammation, excessive inflammatory cell recruitment can lead to damage, which is mediated, in part, by the neutrophil. We have uncovered a recently described protein, the Extracellular Immunoproteasome, which may play role in bringing, or attracting, damaging levels of these inflammatory cells to the lung. We now wish to confirm further the role of Extracellular Immunoproteasome in inflammatory cell recruitment and lung injury using a novel Immunoproteasome inhibitor, QUB1034, in models of acute lung inflammation. We will also confirm a role for protease activated receptors (PARs) as a target for Extracellular Immunoproteasome-mediated inflammatory cell recruitment and injury using specific PAR antagonists. The very clear application of this study is in the targeting of Extracellular Immunoproteasome to regulate inflammatory and injury in disease, particularly lung disease, although there is a potential role for this Extracellular Immunoproteasome-mediated pathway in other inflammatory disease processes. Future studies looking at the evaluation of the Extracellular Immunoproteasome QUB1034 inhibitor in lung disease in collaboration is a very real possibility as we are set-up to carry out such studies in Queen's Belfast as part of the UK Respiratory Translational Research Partnership.
Planned Impact
Who Will Benefit from this Research?
The findings from this study will benefit the life science community especially those working in the area of innate host defense and regulation of inflammation. In addition, the findings may be of therapeutic value given that proteasome is a therapeutic target in other processes and disease including cancer. For example, proteasome inhibitors are either in use such as bortezomib, developed by Takeda Oncology and carfilzomib, developed by Onyx Pharmaceuticals. Although these drugs are beneficial for the treatment of some cancers, they are not specific for immunoproteasome. Clearly, charities linked to inflammatory diseases including the British Thoracic Society and the British Lung Foundation will also be interested in new data and potential targets for the treatment of inflammatory lung diseases such as ARDS. Such societies/charities generally have excellent links with local and national governments who would also be interested in the development of new therapies, especially therapeutics that could reduce healthcare costs and improve quality of life as well as being of use in the treatment of other acute (and chronic) lung diseases with an inflammation/infection component which may be potentially related to increased Extracellular Immunoroteasome activity including most significantly chronic obstructive pulmonary disease (COPD).
How will they benefit from this research?
We would be keen to pursue pre-clinical studies in collaboration with relevant respiratory CROs including Domainex by securing future funding from MRC perhaps via the MICA or DPFS funding stream. Subsequent studies could lead to a phase 1 clinical trial that could be carried out in conjunction with clinical colleagues in Queen's. We have an excellent pre-clinical and clinical trials programme at QUB led by Professor Danny McAuley (one of the co-PIs on this application) and there are clear pathways to development of Extracellular Immunoproteasome inhibitors initially in the human LPS model and, if successful, ARDS patients. Such studies could be funded by NIHR/EME programmes. The development of Extracellular Immunoproteasome inhibitors for treatment of lung disease patients could improve the lifestyle of these patients as well as increase their lifespan. There could also be spin-offs from our research leading to investigation of Extracellular Immunoproteasome in other diseases such as COPD which represents a large patient cohort worldwide with significant impact on patient treatment as well as representing a large market for pharma companies developing Extracellular Immunoproteasome inhibitors.
The findings from this study will benefit the life science community especially those working in the area of innate host defense and regulation of inflammation. In addition, the findings may be of therapeutic value given that proteasome is a therapeutic target in other processes and disease including cancer. For example, proteasome inhibitors are either in use such as bortezomib, developed by Takeda Oncology and carfilzomib, developed by Onyx Pharmaceuticals. Although these drugs are beneficial for the treatment of some cancers, they are not specific for immunoproteasome. Clearly, charities linked to inflammatory diseases including the British Thoracic Society and the British Lung Foundation will also be interested in new data and potential targets for the treatment of inflammatory lung diseases such as ARDS. Such societies/charities generally have excellent links with local and national governments who would also be interested in the development of new therapies, especially therapeutics that could reduce healthcare costs and improve quality of life as well as being of use in the treatment of other acute (and chronic) lung diseases with an inflammation/infection component which may be potentially related to increased Extracellular Immunoroteasome activity including most significantly chronic obstructive pulmonary disease (COPD).
How will they benefit from this research?
We would be keen to pursue pre-clinical studies in collaboration with relevant respiratory CROs including Domainex by securing future funding from MRC perhaps via the MICA or DPFS funding stream. Subsequent studies could lead to a phase 1 clinical trial that could be carried out in conjunction with clinical colleagues in Queen's. We have an excellent pre-clinical and clinical trials programme at QUB led by Professor Danny McAuley (one of the co-PIs on this application) and there are clear pathways to development of Extracellular Immunoproteasome inhibitors initially in the human LPS model and, if successful, ARDS patients. Such studies could be funded by NIHR/EME programmes. The development of Extracellular Immunoproteasome inhibitors for treatment of lung disease patients could improve the lifestyle of these patients as well as increase their lifespan. There could also be spin-offs from our research leading to investigation of Extracellular Immunoproteasome in other diseases such as COPD which represents a large patient cohort worldwide with significant impact on patient treatment as well as representing a large market for pharma companies developing Extracellular Immunoproteasome inhibitors.
Publications
Brown R
(2020)
The Impact of Aging in Acute Respiratory Distress Syndrome: A Clinical and Mechanistic Overview.
in Frontiers in medicine
Cheetham C
(2024)
Neutrophil-Derived Proteases in Lung Inflammation: Old Players and New Prospects
in International Journal of Molecular Sciences
Keown K
(2020)
Airway Inflammation and Host Responses in the Era of CFTR Modulators.
in International journal of molecular sciences
McKelvey MC
(2021)
Proteases, Mucus, and Mucosal Immunity in Chronic Lung Disease.
in International journal of molecular sciences
Ryan S
(2020)
Fasciola hepatica-Derived Molecules as Regulators of the Host Immune Response
in Frontiers in Immunology
Scott A
(2022)
The Serpin-tine Search for Factors Associated with COVID-19 Severity in Patients with Chronic Obstructive Pulmonary Disease.
in American journal of respiratory and critical care medicine
| Description | Research Adviser to the Lung Research and Innovation Group (LRIG) of Asthma + Lung UK |
| Geographic Reach | National |
| Policy Influence Type | Participation in a guidance/advisory committee |
| Description | Collaboration with Dr Aoife Rodgers |
| Organisation | Queen's University Belfast |
| Department | Centre for Experimental Medicine |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | Dr Rodgers started as a new Lecturer in Respiratory Immunology in Queen's University Belfast in January 2024. Prior to that, she was a PDRA in my laboratory from Jan 2023-Dec 2023. During this period, Aoife and I have co-authored 4 papers together and recentyl secured funding from the MRC Gap Fund (UKRI223 / APP43931) |
| Collaborator Contribution | Aoife brings significant experience especially in the area of host-pathogen biology to my laboratory as well as novel in vitro and in vivo models of infection which I have been utilising for my peptide work |
| Impact | 1. SLPI deficiency alters airway protease activity and induces cell recruitment in a model of muco-obstructive lung disease. Brown R, Dougan C, Ferris P, Delaney R, Houston CJ, Rodgers A, Downey DG, Mall MA, Connolly B, Small D, Weldon S, Taggart CC. Front Immunol. 2024 Sep 5;15:1433642. doi: 10.3389/fimmu.2024.1433642. eCollection 2024. PMID: 39301022 Free PMC article. 2. Bacterial Outer Membrane Vesicles: Role in Pathogenesis and Host-Cell Interactions. Magaña G, Harvey C, Taggart CC, Rodgers AM. Antibiotics (Basel). 2023 Dec 28;13(1):32. doi: 10.3390/antibiotics13010032. PMID: 38247591 Free PMC article. Review. 3. Airway Epithelium Senescence as a Driving Mechanism in COPD Pathogenesis. Bateman G, Guo-Parke H, Rodgers AM, Linden D, Bailey M, Weldon S, Kidney JC, Taggart CC. Biomedicines. 2023 Jul 23;11(7):2072. doi: 10.3390/biomedicines11072072. PMID: 37509711 Free PMC article. Review. 4. Secretory Leucoprotease Inhibitor (SLPI) Promotes Survival during Acute Pseudomonas aeruginosa Infection by Suppression of Inflammation Rather Than Microbial Killing. Osbourn M, Rodgers AM, Dubois AV, Small DM, Humphries F, Delagic N, Moynagh PN, Weldon S, Taggart CC, Ingram RJ. Biomolecules. 2022 Nov 22;12(12):1728. |
| Start Year | 2023 |
| Description | Collaboration with Dr Judith Coppinger |
| Organisation | Royal College of Surgeons in Ireland |
| Country | Ireland |
| Sector | Academic/University |
| PI Contribution | We have isolated extracellular vesicles (EVs) from primary bronchial epithelial cells derived from patients with chronic obstructive pulmonary disease (COPD) and age/sex matched healthy controls. These EVs were sent to Dublin for quantitative proteomics evaluation |
| Collaborator Contribution | Dr Coppinger has carried out 2 separate sets of proteomics for us. The data from this study will eventually lead to a publication but is currently being used to apply for funding from the US-Ireland funding scheme (https://research.hscni.net/us-ireland-rd-partnership-programme) |
| Impact | Grant application to the US-Ireland funding scheme in Nov 2022. Grant was ranked in the 33rd percentile and will be resubmitted |
| Start Year | 2022 |
| Description | Collaboration with Dr Rabindra Tirouvanziam |
| Organisation | Emory University |
| Country | United States |
| Sector | Academic/University |
| PI Contribution | This collaboration with Dr Tirouvanziam commenced in Spring 2022 with a view to develop a US-Ireland grant application (https://research.hscni.net/us-ireland-rd-partnership-programme). The focus of the grant is to evaluate the role of extracellular vesicles (EVs) in inflammation and infection in chronic lung disease. The grant was submitted in Nov 2022 and scored in the 33rd percentile. The grant has now been resubmitted in Nov 2024. |
| Collaborator Contribution | Dr Tirouvanziam acted as the Principal Investigator in the US-Ireland grant application and brought together most of the information that was required for the grant application |
| Impact | Submission of US-Ireland grant application (NIH RO1 mechanism) |
| Start Year | 2022 |
| Description | Collaboration with Dr Rebecca Coll |
| Organisation | Queen's University Belfast |
| Department | Centre for Experimental Medicine |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | We have been analysing release of extracellular immunoproteasome from macrophage cell lines and have identified a novel pathway to release of this protein. |
| Collaborator Contribution | Dr Coll has provided us with reagents to aid in the pathway release analysis as well as primary macrophages to replicate our findings in macrophage cell lines. |
| Impact | Nothing as yet |
| Start Year | 2022 |
| Description | Collaboration with Prof John Simpson |
| Organisation | Newcastle University |
| Department | Institute of Cellular Medicine |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | I have helped one of Prof Simpson's clinical fellows, Dr Jason Powell, to draft two Fellowships to the Medical Research Council and the Wellcome Trust. I am a collaborator on both applications |
| Collaborator Contribution | Dr Powell, along with Prof Simpson, have drafted 2 Fellowship applications in which I am a collaborator |
| Impact | Powell J, Powell S, Mather MW, Beck L, Nelson A, Palmowski P, Porter A, Coxhead J, Hedley A, Scott J, Rostron AJ, Hellyer TP, Zaidi F, Davey T, Garnett JP, Agbeko R, Ward C, Stewart CJ, Taggart CC, Brodlie M, Simpson AJ. Tracheostomy in children is associated with neutrophilic airway inflammation. Thorax 2023 Feb 20:thorax-2022-219557 |
| Start Year | 2022 |
| Description | Adventures in Respiratory Disease Research |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Postgraduate students |
| Results and Impact | A seminar given by me to the Respiratory Group at Queen's University Belfast |
| Year(s) Of Engagement Activity | 2024 |
| Description | Annual participation in the Northern Ireland Science Festival |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Public/other audiences |
| Results and Impact | This was an event designed for public participation and held at my local institute workplace. It involved lab demonstrations and talks given to the general public who were in attendance |
| Year(s) Of Engagement Activity | 2023,2024,2025 |
| URL | https://nisciencefestival.com/ |
| Description | Immune models for lung disease research |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Postgraduate students |
| Results and Impact | A seminar given by me at the Queen's University Belfast Biological Services Unit (BSU) seminar series |
| Year(s) Of Engagement Activity | 2024 |
| Description | Inflammation in Lung Disease: mechanisms and intervention |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | Research seminar delivered by me at the University of Leicester |
| Year(s) Of Engagement Activity | 2024 |
| Description | Main components and functions of the extracellular matrix and ECM turnover |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | The European Respiratory Society (ERS) virtual academies are for all adult and paediatric respiratory professionals wishing to update their knowledge, particularly those preparing for the European examinations in adult and paediatric respiratory medicine. The programmes are designed to challenge participants and provide a learning framework, and consist of comprehensive lectures, interactive case-based sessions, workshops and Q&A discussion sessions. I provided a pre-recorded presentation (Feb 2023) for the virtual academy in May 2023 |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.ersnet.org/events/ers-virtual-academy-of-lung-physiology-and-structure/ |
| Description | Northern Ireland Science Festival |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Public/other audiences |
| Results and Impact | 100+ members of the public (with approximately 50% school-aged children) regularly attend our annual Northern Ireland Science Festival sponsored event in our laboratories in the Wellcome Wolfson institute for Experimental Medicine. The event comprises a mix of talks, presentations and laboratory tours which varies from year to year |
| Year(s) Of Engagement Activity | 2022,2023,2024,2025 |
| URL | https://nisciencefestival.com/ |
| Description | Pharmacological inhibition of cathepsin S and consequences for cathepsin C activation |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Policymakers/politicians |
| Results and Impact | A talk given by me at the 4th International Symposium on Cathepsin C in Tours, France |
| Year(s) Of Engagement Activity | 2024 |
| Description | Protease-mediated Inflammation in Lung Disease |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | Research seminar delivered by me at the University of Manchester in December 2023 |
| Year(s) Of Engagement Activity | 2023 |
| Description | Protease-mediated Inflammation in Lung Disease |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Postgraduate students |
| Results and Impact | A seminar given by me at the Living Lung Seminar Series in the Royal College of Surgeons in Ireland, Dublin |
| Year(s) Of Engagement Activity | 2024 |
| Description | Proteases at the cutting edge |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | A talk given by me at the 7th World Bronchiectasis Conference in Dundee, UK |
| Year(s) Of Engagement Activity | 2024 |
| Description | Proteomic analysis of nasal lavage fluid samples in people with Cystic fibrosis after one year of treatment with Elexacaftor/Tezacaftor/Ivacaftor - The RECOVER Study |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | A talk given by my PhD student, Sam Nolan, at the European Cystic Fibrosis Society meeting in Glasgow, June 2024 |
| Year(s) Of Engagement Activity | 2024 |
