Tobacco and Tuberculosis in the Past, Present, and Future: a Bioarchaeology of People, Products, and Pathogens

Lead Research Organisation: University of Leicester
Department Name: Sch of Archaeology and Ancient History

Abstract

Through the lens of tobacco use, Part 1 of this fellowship demonstrates the value of Bioarchaeology for current health debates. Later, part 2 expands on this approach and explores human tuberculosis co-evolution. Tobacco, mostly commodified to generate wealth for governments and elites in the post-medieval period (16th-19th centuries), is known today to significantly alter the patterns and prevalence of socially significant diseases. Yet, tobacco use is not considered in social histories of health. This misses a chance to examine less direct dictators of health in the past, e.g. sociopolitics and commodification of tobacco, and for Bioarchaeology to contribute to one of today's most pressing public health issues.

Bone constantly adapts in life, chemically and physically, reflecting consumed products, environment, and disease. Thus, research on the remains of past people reveal how changes, including new behaviours and social priorities, impact us. Part 1 of this fellowship uses skeletal remains in a comparative approach to examine how disease patterns changed after the arrival of tobacco in three different post-medieval societies. It examines important diseases of the period (tuberculosis, vitamin D deficiency, dental disease, and cancer) all known to be exacerbated by tobacco use today. By contextualising disease patterns with historical sources on tobacco use and commodification, we can assess how commodification impacted health. Additionally, in using pre-modern individuals (pre 1900s) we can begin to disentangle the role of tobacco from other modern life variables (pollution, domestic smoke, and antibiotics) in disease causation and expression.

Based at the School of Archaeology and Ancient History (University of Leicester (UoL)), this project uses 900 skeletons from three regions of differing tobacco history: England, major tobacco producers and mainly pipe smoking; the Netherlands, importers of English tobacco and mainly pipe smokers; and Spain, importers and users of snuff, cigars and cigarettes. Working with the UoL's Department of Genetics and Genome Biology and the Institute of Genomics at the University of Tartu, biomolecular methods, including genetic and proteomic (proteins), will complement macroscopic methods for disease analysis (palaeopathology) to conceptualise disease patterns. A novel biomolecular approach using metabolomics will be developed with the UoL's Precision Medical Diagnostic Institute to improve detection of tobacco use and exposure in past individuals. Metabolomics is a biochemical method that studies all small molecules in a biological sample. Analysis of these molecules permits researchers to identify distinctive indicators (biomarkers) of drug use or disease in biological material, including bone and teeth. Its development and application here would be the first on archaeological bone, and sets up the foundations for research in part 2 where we aim to provide insight into changing TB dynamics.

Due to tremendous public interest in archaeology, an exhibition, podcasts, and an online teaching resource will improve understandings of the role of tobacco in developing chronic diseases less well known to be exacerbated by smoking. Such initiatives are valuable in preventing the uptake of smoking, a priority for many health agencies, and improving people's life quality. An interdisciplinary working group focusing centred on archaeological remains will be formed and information disseminated through open access publication and conference presentation. Overall, in exploring how tobacco commodification altered disease in past groups, and how TB patterns change overtime, this fellowship will demonstrate Bioarchaeology's power to provide unique insights into the complex dynamics between people, cultural behaviours and health in the past, and feed into contemporary health debates of significance today.

Planned Impact

Today tobacco use remains the leading cause of preventable death and disability globally. Aggressive marketing strategies by tobacco companies in countries with low or no tobacco control exacerbates this issue, while new ways of using tobacco whose long-term effects are not known, are spreading across communities. As Part 1 of this Fellowship assesses the relationship between disease and tobacco use, the information generated has the potential to both directly and indirectly impact on the health of the British and wider public through its acquisition of knowledge on factors that influence individual and population health, and through its ability to inform the public about the risks of tobacco use. Information generated in Part 2, which will explore changing patterns of tuberculosis with human behaviour, would also generate significant impact. Part 1 research is of benefit to:

Wider public (directly and indirectly)
Public Health researchers, charities, and NGOs
Policy makers

This research will demonstrate the long-lasting implications of socio-political and economic decisions taken in the late 16th and 17th centuries on health, especially in relation to tobacco. This is a key priority for NGOs (e.g. the WHO, National Institutes for Health) who aim to prevent disease by understanding how existing and emerging products, combined with the current socio-political climate may impact us in the future. Furthermore, as one of the first truly global products, this research is particularly pertinent to one area: globalisation and its associated processes are one of the biggest challenges facing modern health as its effects are multiscalar and have variable effects on societies (The WHO). To plan for future outcomes in all societies, a greater understanding of this variation is needed, something we address by exploring three different places. This is highly relevant today as tobacco companies move into regions with limited restrictions on tobacco use and marketing. Revealing long-term effects will be informative for policy making in these areas. We will produce a short report on our findings that can be provided to those involved in policy making (e.g. the Commons Select Committee on Health and Social Care, MP's dealing with related issues, NGO's etc), which has the potential to meet UKRI goals on a global health challenge. Research will be disseminated at conferences of the UK Nicotine and Cessation, Public Health England and the World Conference on Tobacco or Health. Given the relationship between early tobacco use and medicine, a public exhibition where we also invite representatives from charities, NGO's and policy makers etc will be proposed to the Wellcome Trust. This will cover the history of tobacco use in the UK, and its long term implications for health.

Bioarchaeology has tremendous public interest in Britain. People are fascinated with skeletal research as everyone has a skeleton and has experienced pain, trauma, toothache, illness etc, which makes the research relatable. A big public health priority is preventing people starting smoking, especially in the young and/or lower socioeconomic groups (CDC, Nuffield Health). Bioarchaeology can improve public knowledge on the risks of tobacco use and its long-term implications through public engagement, which would serve to improve public health. While events, e.g. workshops and talks would be primarily targeted at young people, museums and other relevant community groups would be targeted, including schools in regions surrounding Leicester and London with higher numbers of disadvantaged children where the uptake of smoking is still common. We also plan to produce a free online digital teaching resource for teachers. To get a global audience social media will be used. It is anticipated that this can benefit the health of people by discouraging tobacco use, which will benefit people today, and given the cost of tobacco-related illness and death, society in the future.

Publications

10 25 50
 
Description Metabolomics is the analysis of small molecules, some of which can be unique, or unique in combination to a particular state, disease, behaviour. We have demonstrated that it is possible to obtain biologically informative metabolomic data from human bone, specifically archaeological human bone. We have published the results of this in a number of articles, with two more forthcoming. This opens up the possibilities for archaeologists and other researchers in clinical, medical and anatomical sciences to study the metabolome of bone. This can reveal important information about phenotype, which in our case was smoking.
Exploitation Route The post doc on my project is keen to set up his own lab in Spain to continue the development of archaeometabolomics.
Archaeometabolomics can be added the suite of tools that are already in use by archaeologists. In particular, it provides the opportunity to look at the impact of cultural practices and behaviours on people in the past, which opens up multiple doors for archaeologists. In doing this, it opens up further opportunities to think about long term evolution of human health and disease, something that is valuable for modern researchers.
Sectors Chemicals

Education

Healthcare

Culture

Heritage

Museums and Collections

Other

URL https://www.nature.com/articles/s41598-023-27401-0#:~:text=Human%20osteoarchaeological%20material%20are%20a,illuminating%20about%20our%20current%20condition.
 
Description Impact on application processes for destructive sampling for human skeletal remains
Geographic Reach Multiple continents/international 
Policy Influence Type Contribution to new or improved professional practice
URL https://historicengland.org.uk/content/docs/advice/science-and-the-dead-2nd-ed/
 
Description 100 PhD centenary scholarships
Amount £72,000 (GBP)
Organisation University of Leicester 
Sector Academic/University
Country United Kingdom
Start 08/2022 
End 03/2026
 
Description Bursary for Metabolomics data processing and Data Analysis Course
Amount £250 (GBP)
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 02/2021 
End 02/2021
 
Description Midlands4Cities doctoral training partnership
Amount £70,000 (GBP)
Organisation Arts & Humanities Research Council (AHRC) 
Sector Public
Country United Kingdom
Start 09/2021 
End 10/2024
 
Description NERC Discipline Hopping Grant
Amount £9,000 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 01/2022 
End 07/2022
 
Description Philip Leverhulme Prize
Amount £100,000 (GBP)
Organisation The Leverhulme Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 05/2023 
End 05/2025
 
Description Small costs to support Taking a breath symposium
Amount £76 (GBP)
Organisation British Association for Biological Anthropology and Osteoarchaeology 
Sector Charity/Non Profit
Country United Kingdom
Start 05/2021 
End 06/2021
 
Title Extraction method for Metabolomic analysis of archaeological bone 
Description We have created a protocol for the extraction of metabolites from archaeological human skeletal remains. Archaeological skeletal remains hold direct information about the lives and health of past populations which allows us to reconstruct evolutionary patterns of both humans and their pathogens. This is valuable for contextualising modern dilemmas. We have created a method that outlines how to select material (what bone type and element), clean and prepare for sampling, identifies optimum quantities of bone needed for successful metabolomic analysis, type and quantities of solvents necessary to extract a full range of metabolites for analysis. 
Type Of Material Biological samples 
Year Produced 2023 
Provided To Others? Yes  
Impact Another team (UKRI-FLF) is adopting our method for their own research on forensic bone. This was presented at the British Association for Biological Anthropology and Osteoarchaeology 2021 (Teeside) https://www.babao.org.uk/assets/Uploads/BABAO-2021-Programme.pdf This was also presented as a posted at the Metabolomics Society meeting 2021. 
URL https://www.nature.com/articles/s41598-023-27401-0
 
Title Metabolomic protocol for the extraction and analysis of metabolites from historical (tobacco) plants 
Description Working with Kew Gardens, we have designed and tested a metabolomic extraction protocol and analysis method for use on historical plants. This will published in 2022 
Type Of Material Biological samples 
Year Produced 2023 
Provided To Others? Yes  
Impact In using this method we were able to add new information to the historical collections at Kew. We identified that one specimen has been mislabelled, and we were also able to identify an unknown specimen. We are hoping to do a larger study with Kew gardens looking at other tobaccos, and potentially expanding to other plants. 
URL https://www.sciencedirect.com/science/article/pii/S030544032300047X?via%3Dihub
 
Title Metabolites of archaeological human bone 
Description This dataset contains RAW MS data from archaeological human skeletal remains stored at MetaboLights www.ebi.ac.uk/metabolights/MTBLS4437. 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact This was recently published, so no known outcomes yet 
URL http://www.ebi.ac.uk/metabolights/MTBLS4437
 
Title Metabolites of historic tobaccos 
Description Untargeted metabolomic data from the analysis of modern and historical tobacco (Nicotiana tobacum, Nicotinana rustica). Platform used was a high flow Acquity UPLC system coupled to a Waters Synapt G2 HDMS system 
Type Of Material Database/Collection of data 
Year Produced 2023 
Provided To Others? Yes  
Impact This is the first metabolomic data for historical tobacco and acts an important basis for future work surrounding historical tobacco use. As part of developing this dataset, we were also able to validate some of the archives of the collection (Kew Gardens). 
URL https://www.sciencedirect.com/science/article/pii/S030544032300047X?via%3Dihub#appsec1
 
Title Smoking and ancient dental calculus genetic data 
Description This repository is for keeping somewhat organized the data processing and analysis for investigating whether the microbiome in archaeological dental calculus differs between individuals who have pipe notches (presumed smokers) and individuals who don't (presumed non- or passive smokers). This includes sequencing statistics, mapping, etc., analyses. 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
Impact This is the first time that dental data has been directly associated oral microbiome data (genetic) and makes a novel contribution to the field. 
URL https://github.com/ivelsko/smoking_calculus
 
Description Bone metabolomic interlab and protocol testing 
Organisation Northumbria University
Country United Kingdom 
Sector Academic/University 
PI Contribution We have been sharing our new protocol with Noemi Procopio, an UKRI-FLF, working on forensic bone from body farms. As little research has been carried out on bone using metabolomics, we are undertaking testing on the best methods and equipment to use. We have therefore run some of their samples using our protocol and equipment here at Leicester. We have also run some of their samples using their protocol using our equipment. The results will then be compared to assess what will be the optimum protocol and equipment.
Collaborator Contribution In return Northumbria have run some of our samples using their protocol and equipment.
Impact No outputs as of yet as we are still working on the results. This will be multidisciplinary involving us as Archaeologists, and Northumbria as Forensic Science
Start Year 2021
 
Description Collaboration with the ENHANCE-D project 
Organisation Newcastle Dental Hospital
Country United Kingdom 
Sector Hospitals 
PI Contribution We will be working together to understand how the oral microbiome has changed over the past 500 years since the introduction of tobacco into Western Europe. My project and through my Leverhulme grant, will be supplying ancient dental calculus samples and funds for sequencing proteins and DNA.
Collaborator Contribution Dr Richard Holliday and Dr Nick Jakobovics are supplying our team with modern dental plaque and calculus that can act as comparators to our ancient samples. They will also provide support for the sampling of modern patients and ethics applications.
Impact This is a multidisciplinary project that brings together archaeological data with modern dentist health data to create the first evolutionary look at the impact of tobacco consumption on oral health. No out comes yet as we have just started work (Feb 2023)
Start Year 2022
 
Description Examination of Historical Tobacco 
Organisation Royal Botanic Gardens, Kew
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution We are working with Kew Gardens to undertake the first metabolomic analysis of historical tobacco. We are assessing the composition of historical tobaccos that are currently held at Kew gardens to learn more about past tobacco and what people were consuming. In return, we have been able to identify an unknown specimen at Kew, and demonstrate the validity of the labelling of a number of curated samples. We have also created a metabolomics protocol for the analysis of historical tobacco.
Collaborator Contribution Kew gardens have provided us with access to historical tobaccos of known date and provenance. They have allowed us to undertake destructive sampling.
Impact Presentation of the results at Tracing Tobacco Conference (University of Leicester 2021 Dec), Presentation at UK Archaeological Science Conference 2022 (Aberdeen). Article published https://www.sciencedirect.com/science/article/pii/S030544032300047X?via%3Dihub
Start Year 2021
 
Description Metabolomics in archaeology 
Organisation Aarhus University
Country Denmark 
Sector Academic/University 
PI Contribution Sharing of expertise
Collaborator Contribution Use of facilities for validation study for metabolomics. This includes the solvents, use of LC-MS, computer software and facilities. Sharing of expertise.
Impact Poster presented at the 2021 Metabolomics society meeting. Publication on metabolomics human bone archaeological protocol https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9839756/ Publication on the future potential of metabolomics in Archaeology in Science Advances https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10421062/#:~:text=Metabolomic%20analysis%20of%20nonliving%20organisms,in%20turn%2C%20produce%20extraneous%20metabolites.
Start Year 2021
 
Description Creation of Interdisciplinary Tobacco History Network 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact I have started an interdisciplinary tobacco history network with the aim to bring together scholars that are focusing on past tobacco with those working in modern contexts. The objective is to highlight the importance of tobacco history in understanding the current status quo of the tobacco landscape. This includes drawing attention to the myriad of ways in which tobacco is used/perceived and the importance of understanding this in tackling tobacco consumption, the lasting legacies of inequality that tobacco production and use can bring, the social costs of tobacco use, and the importance of decolonising tobacco and tobacco narratives. At present, we have 31 people in the network that cover the globe (USA, Canada, India, Sri Lanka, UK, Western and Eastern Europe and North Africa).
Year(s) Of Engagement Activity 2022
 
Description Creation of the Bioarchaeology Respiratory Network 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Anna Davies Barrett created a research network through the holding of a 2 day international symposium on Bioarchaeology of Respiratory disease 'Taking a Breath'. This free online event bought together bioarchaeologists and other interested parties to present their research and discuss ways that the field should move forward. This was followed by a discussion panel with four leading experts. After this, a formal network has been set up with an email list. A further working group has also met to discuss recording and reporting methods and how to improve the quality of research.
Year(s) Of Engagement Activity 2021
URL https://www.bioarchrespiratorynetwork.com/
 
Description Interview for BBC World Service 'Uruguay's smoking ban and the Carnation Revolution' 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I was invited to be interviewed as part of a BBC World Service program 'Uruguay's smoking ban and the Carnation Revolution'. The purpose of this was to inform the public about the history of tobacco and early anti-smoking sentiment and how this relates with modern anti-smoking movements. The average listening figures for The History Hour is in the millions and is global. As this has just taken place, the direct impact is not yet known.
Year(s) Of Engagement Activity 2024
URL https://www.bbc.co.uk/programmes/w3ct4w6j
 
Description Invited to give a lecturer at 'Introduction to environmental metabolomics PhD and Early Career Researcher Summer School, September 15th 2021, Aarhus University, Roskilde, Denmark 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Diego Sanchez Badillo was invited to participate in the summer school taking place at our project collaborators institute at Aarhus, Denmark. Diego gave a presentation on our current research focusing on the way we developed our extraction protocol and analysis pipelines. As part of this, he engaged and exchanged knowledge with others that are working in metabolomics generally, but two other researchers working with non-osseous archaeological materials. They are now discussing between them future methodological improvements.
Year(s) Of Engagement Activity 2021
URL https://phd.tech.au.dk/for-phd-students/courses/scientific-courses/kurser-2021/environmental-science...
 
Description Public outreach event 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact This was a collaborative event held between four UKRI FLFs on ageing at the Great Exhibition Road Festival (Imperial College London). This included a biomolecular Scientist (Oliver Robinson), a Forensic scientist (Noemi Procopio), myself (archaeology) and Martina Zimmerman (Sociology). The event 'How Old are You Really?' aim to showcase the different ways in which people age, how age is used in research and promote thinking about healthy ageing.
Year(s) Of Engagement Activity 2022
 
Description Skeletal secrets - British Science Festival 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact This workshop aimed to show case the Tobacco, Health and History project as well as demonstrate how bioarchaeologists go about reconstructing the lives of past individuals and populations. This event was extremely popular with all age groups and backgrounds.
Year(s) Of Engagement Activity 2022
URL https://britishsciencefestival.org/event/skeletal-secrets-2/