Testing how developmental pathways can predict evolutionary adaptation to climate change: an Eco-Devo approach.
Lead Research Organisation:
Queen Mary University of London
Department Name: Sch of Biological & Behavioural Sciences
Abstract
The world's climate is changing at an unprecedented rate, with dire consequences for biodiversity and ecosystems on which we depend for our survival. To have a chance at managing this transition, we urgently need to identify which species are at risk, and what determines their fate. One key route to resilience is to evolve rapidly enough to keep up with climate change. Unfortunately, the factors that govern limits to and potential for rapid adaptation are poorly understood, and consequently we lack actionable tools that allow us to predict which species can adapt, and where they are vulnerable.
Plasticity is the ability of individuals to exploit predictive environmental cues in order to optimally match morphology, behaviour, and life cycle events to current or future conditions, for instance between seasons. It is accomplished via developmental cascades that translate cues into coherent trait changes, via sensing mechanisms, hormonal signalling pathways, genetic regulators, and ultimately downstream effector genes.
The growing concern is that climate change is making cues less reliable, as well as changing the optimal balance between traits. Under climate change, previously adaptive existing plastic responses are now leading to mismatches between the environment and expressed traits, and unless populations can rapidly evolve new responses, they may face extinction. I have already demonstrated that capacity to evolve is absent in some populations.
Progress to understand limits to rapid adaptation, and in particular the role of plasticity, has been hampered by fragmentation across disciplines. While mechanistic biology has made great strides in disentangling the gene networks and developmental pathways by which the genome makes a multicellular organism, the role of the environment has typically been ignored as noise. Worse, most studies have been carried out in artificial lab environments, far from the complexities of the real world where plastic responses evolve and where they could potentially aid climate resilience.
On the other hand, predictive models of climate change resilience which guide species vulnerability assessments suffer from limited explanatory power as they ignore important biological mechanisms such as phenotypic plasticity, adaptation, and genetics. Rapid adaptation is particularly poorly integrated into these resilience models, due to lack of high-quality empirical data and analytical methods to integrate different types of data.
I have pioneered integrative approaches that bring together developmental, evolutionary, and ecological analytical methods, and have set up tropical butterflies as a powerful model to implement this agenda. Excitingly, new analytical methods in DNA sequencing, genetics, and statistics now hold the promise to connect previously disparate fields.
My multidisciplinary research places me in a unique position to exploit these new technological developments, and realise adaptive capacity as a common currency between mechanistic and conservation biology. Specifically, is genetic variation at key regulatory hubs of developmental pathways that regulate trait expression. Importantly, developing this common currency will enable new tools to predict evolutionary responses to climate change from field-collected DNA samples and climate data.
A FLF would provide me with the opportunity to deliver on this transformative research agenda, and establish me as a leader in the field of Eco-Devo and climate change biology.
Plasticity is the ability of individuals to exploit predictive environmental cues in order to optimally match morphology, behaviour, and life cycle events to current or future conditions, for instance between seasons. It is accomplished via developmental cascades that translate cues into coherent trait changes, via sensing mechanisms, hormonal signalling pathways, genetic regulators, and ultimately downstream effector genes.
The growing concern is that climate change is making cues less reliable, as well as changing the optimal balance between traits. Under climate change, previously adaptive existing plastic responses are now leading to mismatches between the environment and expressed traits, and unless populations can rapidly evolve new responses, they may face extinction. I have already demonstrated that capacity to evolve is absent in some populations.
Progress to understand limits to rapid adaptation, and in particular the role of plasticity, has been hampered by fragmentation across disciplines. While mechanistic biology has made great strides in disentangling the gene networks and developmental pathways by which the genome makes a multicellular organism, the role of the environment has typically been ignored as noise. Worse, most studies have been carried out in artificial lab environments, far from the complexities of the real world where plastic responses evolve and where they could potentially aid climate resilience.
On the other hand, predictive models of climate change resilience which guide species vulnerability assessments suffer from limited explanatory power as they ignore important biological mechanisms such as phenotypic plasticity, adaptation, and genetics. Rapid adaptation is particularly poorly integrated into these resilience models, due to lack of high-quality empirical data and analytical methods to integrate different types of data.
I have pioneered integrative approaches that bring together developmental, evolutionary, and ecological analytical methods, and have set up tropical butterflies as a powerful model to implement this agenda. Excitingly, new analytical methods in DNA sequencing, genetics, and statistics now hold the promise to connect previously disparate fields.
My multidisciplinary research places me in a unique position to exploit these new technological developments, and realise adaptive capacity as a common currency between mechanistic and conservation biology. Specifically, is genetic variation at key regulatory hubs of developmental pathways that regulate trait expression. Importantly, developing this common currency will enable new tools to predict evolutionary responses to climate change from field-collected DNA samples and climate data.
A FLF would provide me with the opportunity to deliver on this transformative research agenda, and establish me as a leader in the field of Eco-Devo and climate change biology.
Organisations
- Queen Mary University of London (Lead Research Organisation)
- University of Buea (Collaboration)
- Adam Mickiewicz University in Poznan (Collaboration)
- University of Glasgow (Collaboration)
- University of Cambridge (Project Partner)
- The University of Hong Kong (Project Partner)
- University of Malawi (Project Partner)
- Oxford Brookes University (Project Partner)
- University of Helsinki (Project Partner)
- Private Address (Project Partner)
Publications
Riley C
(2023)
Does the definition of a novel environment affect the ability to detect cryptic genetic variation?
in Journal of Evolutionary Biology
Van Bergen E
(2023)
Digest: Habitat seasonality drives evolutionary change in plasticity in Bicyclus butterflies.
in Evolution; international journal of organic evolution
Related Projects
| Project Reference | Relationship | Related To | Start | End | Award Value |
|---|---|---|---|---|---|
| MR/V024744/1 | 30/03/2022 | 28/05/2022 | £1,437,698 | ||
| MR/V024744/2 | Transfer | MR/V024744/1 | 30/05/2022 | 31/12/2026 | £1,373,252 |
| Description | Objective A - Developmental experiments demonstrate the narrow window for cue sensitivity in Bicyclus anynana, occuring precisely from the last larval stage until early pupation. - Regulatory architecture of seasonal reproductive plasticity in Bicyclus anynana. Our results show that co-expressed gene modules are highly preserved between wet and dry seasonal forms. This suggests that seasonal phenotypes are largely regulated by directional shifts in gene expression - i.e. the same sets of genes are used to produce both seasonal forms, but they are expressed at different levels and/or patterns during each season. We also found that HUB genes (genes that are more highly connected with other genes in their network modules; i.e. "master regulators") within season-specific modules were under divergent regulation from cis regulatory genetic variants. Overall, the results indicate the adaptive potential of genes more tightly linked to seasonal plasticity. |
| Exploitation Route | Key new insights into the regulation of phenotypic plasticity at the genetic and developmental level. This is of wide interest in biology and will be built upon by others. |
| Sectors | Agriculture Food and Drink Education Environment Pharmaceuticals and Medical Biotechnology |
| Description | Building bridges between developmental pathways and adaptation to climate change in tropical butterflies (The L'Oréal-UNESCO UK and Ireland For Women in Science Rising Talent Award to Dr. Océane Seudre) |
| Amount | £15,000 (GBP) |
| Organisation | L'Oreal (Paris) |
| Sector | Private |
| Country | France |
| Start | 09/2024 |
| End | 09/2025 |
| Description | Novel insights into the evolution of seasonal plasticity in African Bicyclus butterflies using natural populations (to Dr. Madeleine Carruthers) |
| Amount | £5,000 (GBP) |
| Funding ID | SR24\1037 |
| Organisation | British Ecological Society |
| Sector | Charity/Non Profit |
| Country | United Kingdom |
| Start | 07/2024 |
| End | 07/2025 |
| Description | Melanitis leda project. Adam Mickiewicz University in Poznan, Poland; OPUS grant funded by National Science Centre Poland |
| Organisation | Adam Mickiewicz University in Poznan |
| Country | Poland |
| Sector | Academic/University |
| PI Contribution | This project investigates global distribution and local adaptation of the butterfly Melanitis leda in Africa, Asia and Australia in order to understand how it has so successfully spread across such a large range. My contributions are: 1. I co-supervise a PhD student who uses genomics to test local adaptation and biogeography 2. I contribute specimens that we collected in our fieldwork. 3. I assist in developing lab, field and computational methods |
| Collaborator Contribution | The main partner is Dr. Freerk Molleman, PI on the grant and team leader at Adam Mickiewicz University in Poznan, Poland. His contributions are 1. Leading this grant 2. Sharing field collection protocols with our team 3. Sharing Bicyclus butterfly specimens from his fieldwork in Africa that I can use in my UKRI (MRC) funded project (in-kind contribution) |
| Impact | Submitted a manuscript for publication, currently under review at PeerJ. Preprint available here: https://www.biorxiv.org/content/10.1101/2023.12.11.571078v1 |
| Start Year | 2022 |
| Description | University of Buea |
| Organisation | University of Buea |
| Country | Cameroon |
| Sector | Academic/University |
| PI Contribution | Co-supervision of student projects at University of Buea; organisation of workshop at University of Buea. |
| Collaborator Contribution | Support for fieldwork in Cameroon. |
| Impact | None yet. |
| Start Year | 2023 |
| Description | University of Glasgow |
| Organisation | University of Glasgow |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | Our team provides specimens, data, and analyses. |
| Collaborator Contribution | Dr. Oskar Brattstrom (University of Glasgow) is a world-leading expert in ecology and evolution of African Bicyclus butterflies. Our research in the FLF uses these butterflies as a model system. Dr. Brattstrom is involved in training of our team in Bicyclus ecology, and in data interpretation and manuscript preparation. |
| Impact | None yet. |
| Start Year | 2022 |
| Description | ESEB 2022 presentation VO |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | PI presented ongoing research at the European Society for Evolutionary Biology's main conference ESEB, held in Prague in August 2022. The audience consisted of evolutionary biologists of all career levels from around the world. |
| Year(s) Of Engagement Activity | 2022 |
| URL | https://www.eseb2022.cz/en/event-programme-list |
| Description | Festival of Communities (Tower Hamlets, London, UK) |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Public/other audiences |
| Results and Impact | Me and my team showcased butterflies and butterfly research to to the general public as part of Queen Mary's yearly 'Festival of Communities' in Tower Hamlets, London. We engaged with the general public, in particular with children, through our exhibition focused on games and creativity. |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.qmul.ac.uk/festival/ |
| Description | Fieldwork tropical rainforest Cameroon |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Public/other audiences |
| Results and Impact | In 2023, I led a large field expedition to Cameroon as part of the UKRI (MRC) grant. We went to the field with my QMUL team (2 postdocs, 1 PhD student), a team from the University of Buea (2 professors, 1 PhD student) and 15 field assistants. Our work had a direct impact on a) University of Buea staff and students via training in ecological techniques; b) local communities via hiring of field assistants and training them in ecological field techniques |
| Year(s) Of Engagement Activity | 2023 |
| Description | Invited seminar Ludwig Maximilian University of Munich (Germany) May 2024 |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | Invited seminar at Ludwig Maximilian University of Munich (Germany), where I presented the work in our lab with a great emphasis on the FLF project, to an audience of university researchers (academics, postdoctoral researchers, PhD students, undergraduate students). |
| Year(s) Of Engagement Activity | 2024 |
| Description | Invited seminar University of Bristol November 2024 |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Professional Practitioners |
| Results and Impact | Invited seminar at the University of Bristol, where I presented the work in our lab with a great emphasis on the FLF project, to an audience of university researchers (academics, postdoctoral researchers, PhD students, undergraduate students). |
| Year(s) Of Engagement Activity | 2024 |
| Description | Lepinar invited seminar |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | PI was invited to present ongoing work at 'Lepinar', an international, online seminar series dedicated to research on ecology and evolution of butterflies, organised by researchers at the University of Cambridge, UK. |
| Year(s) Of Engagement Activity | 2022 |
| URL | https://www.heliconius.org/lockdown-seminars/ |
| Description | Outreach workshop for local primary school London. |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Schools |
| Results and Impact | Outreach workshop for local primary school students, from a nearby school in London. Aged 6-8 years old. Practical lesson on butterfly life-cycles and anatomy, delivered by my team. |
| Year(s) Of Engagement Activity | 2024 |
| Description | Symposium organisation at Biology of Butterflies |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | Our team is organising a symposium on phenotypic plasticity, as part of the Biology of Butterflies conference held in Prague in 2023. |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.bob2023.cz/scientific-symposia/ |
| Description | Two-day statistics workshop at the University of Buea, Cameroon. For 30 local students. |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Postgraduate students |
| Results and Impact | Two-day workshop on statistics, covering an Introduction to R and RStudio and statistical modelling in R. Held at the University of Buea, Cameroon. For 30 local students, including both masters and PhD students. Delivered by FLF PDRA. |
| Year(s) Of Engagement Activity | 2024 |
| Description | Workshop 'Data analysis in R' for staff and students at University of Buea, Cameroon (in-person) |
| Form Of Engagement Activity | Participation in an activity, workshop or similar |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Postgraduate students |
| Results and Impact | In 2023, I led a large field expedition to Cameroon. During this trip, I also led capacity building for 27 Cameroonian students / staff (11 women) through "Data analysis in R" workshop at University of Buea. |
| Year(s) Of Engagement Activity | 2023 |
