Mapping the growing global burden of dengue to help countries plan for the next decade of dengue control
Lead Research Organisation:
London School of Hygiene & Tropical Medicine
Department Name: Epidemiology and Population Health
Abstract
Dengue is one of the fastest growing global infectious diseases with an 8-fold increase in reported cases since 2000. Because a large proportion of dengue virus infections are asymptomatic and the quality of disease surveillance is constantly changing, computational models have been central to estimating the global burden of dengue. However, a key limitation of current models is that they do not accurately estimate how this burden changes year-on-year. This prevents model-based burden estimates of dengue having the same impact they do in the fields of HIV, TB and malaria where they are actively used to track progress towards international targets. This year, new goals for reducing the global burden of dengue between 2021-2030 will be set. Data gaps and limitations of current modelling approaches constraint our ability to track country progress, understand how existing interventions are working and suggest how control programmes need to change to meet these new targets.
In this fellowship I will develop novel detailed global dengue models that allow a new generation of predictions of the past present and future global burden of dengue to be made. These models can be used to answer three main aims:
Aim 1: How has the global growth in dengue burden changed since 2000?
By pairing a new global dengue database with geostatistical and mathematical modelling techniques I will generate unbiased burden estimates of the growth in dengue burden 2000-2020.
Aim 2: How effective have policy changes to reduce dengue deaths been?
Through an analysis of over 4 million individual-level patient records in São Paulo (Brazil) and the Philippines, I will investigate how changes in treatment seeking, diagnosis and clinical management have reduced the risk of dengue death. This will measure the impact of current interventions on mortality and identify where further gains could be made.
Aim 3: By how much will dengue burden grow 2021-2030 in each country?
By projecting the models from Aim 1 into the future taking into account changes in climate, urbanisation and growing levels of immunity to dengue, robust predictions of dengue burden 2021-2030 can be made. A dengue control feasibility assessment will then identify the specific barriers each country faces in meeting their 2021-2030 targets.
This fellowship aims to improve our understanding of how the global burden of dengue is changing at a pivotal time. Aim 1 will focus on developing a new generation of dengue models to estimate past changes in incidence 2000-2020 to understand why we were unable to contain dengue expansion. Aim 2 will answer key questions about the effectiveness of current efforts to reduce dengue deaths. Aim 3 will estimate future growth in dengue incidence allowing countries to decide how to best address this growing problem. All the data, models and predictions will be hosted on a new dedicated website that allows researchers and government officials to explore these estimates in detail and with full transparency. Beyond dengue, these models will also provide fundamental insights into how modern emerging infectious diseases are capable of uncontained global spread and help design new strategies against future pandemics.
In this fellowship I will develop novel detailed global dengue models that allow a new generation of predictions of the past present and future global burden of dengue to be made. These models can be used to answer three main aims:
Aim 1: How has the global growth in dengue burden changed since 2000?
By pairing a new global dengue database with geostatistical and mathematical modelling techniques I will generate unbiased burden estimates of the growth in dengue burden 2000-2020.
Aim 2: How effective have policy changes to reduce dengue deaths been?
Through an analysis of over 4 million individual-level patient records in São Paulo (Brazil) and the Philippines, I will investigate how changes in treatment seeking, diagnosis and clinical management have reduced the risk of dengue death. This will measure the impact of current interventions on mortality and identify where further gains could be made.
Aim 3: By how much will dengue burden grow 2021-2030 in each country?
By projecting the models from Aim 1 into the future taking into account changes in climate, urbanisation and growing levels of immunity to dengue, robust predictions of dengue burden 2021-2030 can be made. A dengue control feasibility assessment will then identify the specific barriers each country faces in meeting their 2021-2030 targets.
This fellowship aims to improve our understanding of how the global burden of dengue is changing at a pivotal time. Aim 1 will focus on developing a new generation of dengue models to estimate past changes in incidence 2000-2020 to understand why we were unable to contain dengue expansion. Aim 2 will answer key questions about the effectiveness of current efforts to reduce dengue deaths. Aim 3 will estimate future growth in dengue incidence allowing countries to decide how to best address this growing problem. All the data, models and predictions will be hosted on a new dedicated website that allows researchers and government officials to explore these estimates in detail and with full transparency. Beyond dengue, these models will also provide fundamental insights into how modern emerging infectious diseases are capable of uncontained global spread and help design new strategies against future pandemics.
Technical Summary
Dengue is one of the fastest growing uncontained emerging infectious diseases. Computational models play an important role in estimating disease burden because of the limitations of epidemiological data. This year, new goals for reducing the global burden of dengue between 2021-2030 will be set, but current models are insufficient for tracking progress. In this fellowship I will develop the next generation of global dengue models that take into account the spatio-temporal variation in multiple types of epidemiological data to predict the past, present and future global burden of dengue.
A systematic search will assemble incidence and prevalence data at a sub-national level with geospatial models used to make predictions for data deficient areas. A Bayesian multi-serotype dengue transmission model fit to dengue incidence and prevalence data will then give consensus estimates of how dengue burden has changed 2000-2020. These predictions will give insights into how dengue was able to spread so rapidly and help design strategies to contain future arboviral pandemics.
With data on >4 million individual-level dengue patient records I will characterise spatio-temporal trends and causal determinants of delayed treatment seeking and misdiagnosis. Using multivariate regression approaches I will then assess the contribution of each of these to the risk of severe disease and death after accounting for relevant confounders. This will give new insights into how to prevent dengue deaths through non-therapeutic approaches.
Projecting these models using future climate, urbanisation and immunity scenarios will allow new predictions of future changes in dengue burden. A national feasibility assessment will then rank countries in their ability to meet 2021-2030 goals based on epidemiological, operational and financial barriers. This work can be used to define target product profiles of novel interventions and identify under or over-achieving control programmes.
A systematic search will assemble incidence and prevalence data at a sub-national level with geospatial models used to make predictions for data deficient areas. A Bayesian multi-serotype dengue transmission model fit to dengue incidence and prevalence data will then give consensus estimates of how dengue burden has changed 2000-2020. These predictions will give insights into how dengue was able to spread so rapidly and help design strategies to contain future arboviral pandemics.
With data on >4 million individual-level dengue patient records I will characterise spatio-temporal trends and causal determinants of delayed treatment seeking and misdiagnosis. Using multivariate regression approaches I will then assess the contribution of each of these to the risk of severe disease and death after accounting for relevant confounders. This will give new insights into how to prevent dengue deaths through non-therapeutic approaches.
Projecting these models using future climate, urbanisation and immunity scenarios will allow new predictions of future changes in dengue burden. A national feasibility assessment will then rank countries in their ability to meet 2021-2030 goals based on epidemiological, operational and financial barriers. This work can be used to define target product profiles of novel interventions and identify under or over-achieving control programmes.
Publications
Andronico A
(2024)
Comparing the Performance of Three Models Incorporating Weather Data to Forecast Dengue Epidemics in Reunion Island, 2018-2019.
in The Journal of infectious diseases
Ashall J
(2023)
A phylogenetic study of dengue virus in urban Vietnam shows long-term persistence of endemic strains.
in Virus evolution
Auzenbergs M
(2024)
Programmatic considerations and evidence gaps for chikungunya vaccine introduction in countries at risk of chikungunya outbreaks: Stakeholder analysis.
in PLoS neglected tropical diseases
Biggs J
(2021)
Serological Evidence of Widespread Zika Transmission across the Philippines
in Viruses
Biggs JR
(2022)
Combining rapid diagnostic tests to estimate primary and post-primary dengue immune status at the point of care.
in PLoS neglected tropical diseases
Brady O
(2021)
What Is the Impact of Lockdowns on Dengue?
in Current infectious disease reports
Brady OJ
(2023)
Relaxation of anti-COVID-19 measures reveals new challenges for infectious disease outbreak forecasting.
in The Lancet. Infectious diseases
Description | WHO target product profile for Wolbachia |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Participation in a guidance/advisory committee |
Impact | The target product profile (TPP) document that will arise from this process when it is complete in Q2 2023 will assist the following stakeholders: 1. Country ministries of health- this provides internationally recognised guidance on what an acceptable and ideal Wolbachia replacement product will look like including setting transparent expectations for cost, speed, effectiveness and durability. 2. Product developers- outlines minimum standards that products must meet, allowing early viability assessments of potential products and streamlining product development to avoid wasted resources. 3. Members of the public- this TPP will allow accelerated uptake of a key intervention against dengue and ensure the product is available at a price point that is equitable for all dengue endemic countries. |
URL | https://www.who.int/news-room/articles-detail/call-for-public-consultation-development-target-produc... |
Description | A global observatory for dengue outbreak early warning |
Amount | € 500,000 (EUR) |
Organisation | AXA |
Sector | Private |
Country | France |
Start | 06/2023 |
End | 07/2026 |
Description | Developing target characteristics for mosquito suppression and replacement programmes using modelling |
Amount | $50,000 (USD) |
Funding ID | OPP1183567 |
Organisation | Bill and Melinda Gates Foundation |
Sector | Charity/Non Profit |
Country | United States |
Start | 11/2021 |
End | 12/2022 |
Description | Supporting a global database and risk map of arboviral diseases for the Global Arboviruses Initiative |
Amount | $175,000 (USD) |
Organisation | World Health Organization (WHO) |
Sector | Public |
Country | Global |
Start | 06/2022 |
End | 08/2023 |
Title | OpenDengue: data from the OpenDengue database |
Description | The OpenDengue project aims to build and maintain a database of dengue case counts for every dengue-affected country worldwide since 1990 or earlier. We collate data from a range of publicly available sources including ministry of health websites, peer-reviewed publications and other disease databases. The complete details, methodologies, and findings associated with this dataset are available in our research paper [URL to be confirmed]. |
Type Of Material | Database/Collection of data |
Year Produced | 2023 |
Provided To Others? | Yes |
Impact | This new database can be used to better understand the long-term drivers of dengue transmission, improve estimates of disease burden, targeting and evaluation of interventions and improving future projections. |
URL | https://figshare.com/articles/dataset/OpenDengue_V1_2/24259573 |
Description | Covid-19 impact on dengue collaboration |
Organisation | Beijing Normal University |
Country | China |
Sector | Academic/University |
PI Contribution | We have jointly worked on two papers assessing the impact of COVID-19 restrictions on dengue transmission in China and globally. Myself and Huaiyu Tian designed the experiments, analysis strategy and wrote the manuscript, while Huaiyu's team collected the data and conducted the analyses. |
Collaborator Contribution | We have jointly worked on two papers assessing the impact of COVID-19 restrictions on dengue transmission in China and globally. Myself and Huaiyu Tian designed the experiments, analysis strategy and wrote the manuscript, while Huaiyu's team collected the data and conducted the analyses. |
Impact | Two main publications (both listed under publications): 1. Assessing the impact of border closures on dengue in China: Li, Naizhe, et al. "Assessing the impact of COVID-19 border restrictions on dengue transmission in Yunnan Province, China: an observational epidemiological and phylogenetic analysis." The Lancet Regional Health-Western Pacific 14 (2021): 100259. 2. Assessing the global impact of COVID-19 restrictions on dengue burden: Chen, Yuyang, et al. "Measuring the effects of COVID-19-related disruption on dengue transmission in southeast Asia and Latin America: a statistical modelling study." The Lancet infectious diseases 22.5 (2022): 657-667. |
Start Year | 2021 |
Description | GAVI Chikungunya vaccine investment case |
Organisation | Bill and Melinda Gates Foundation |
Department | Global Alliance for Vaccination and Immunisation (GAVI) |
Country | Switzerland |
Sector | Charity/Non Profit |
PI Contribution | I co-supervise a PhD student and am involved in discussions with a wider team at LSHTM with GAVI about building evidence to make internal investment decisions within GAVI about prioritising the newly available chikungunya vaccine for donor funding. |
Collaborator Contribution | We have generated new estimates of force of infection globally which is a key precursor to estimating disease burden and likely impact of vaccination campaigns. |
Impact | Kang, Hyolim, et al. "Chikungunya seroprevalence, force of infection, and prevalence of chronic disability after infection in endemic and epidemic settings: a systematic review, meta-analysis, and modelling study." The Lancet Infectious Diseases (2024). |
Start Year | 2022 |
Description | Global Arbovirus Initiative |
Organisation | World Health Organization (WHO) |
Country | Global |
Sector | Public |
PI Contribution | As part oft he Global Arbovirus initiative we have convened an international group of modellers to: i) review the drivers of spatial variations in transmission risk for arboviruses (published) ii) produce new global arbovirus risk maps for dengue, Chikungunya, Zika and yellow fever (completed, submission imminent) iii) meet with WHO arbovirus technical advisory group experts and country representatives to validate and improve the risk maps (in progress) |
Collaborator Contribution | The GAI secretariat set up the meeting and has convened the attendees and overall helped shape all these new collaborators into an effective working group. They also provide direct financial contributions to our activities that funds personnel to conduct the work. |
Impact | review the drivers of spatial variations in transmission risk for arboviruses Lim, Ah-Young, et al. "A systematic review of the data, methods and environmental covariates used to map Aedes-borne arbovirus transmission risk." BMC infectious diseases 23.1 (2023): 708. |
Start Year | 2022 |
Description | Neglected Tropical Diseases Modelling consortium |
Organisation | Neglected Tropical Diseases Modelling Consortium |
Sector | Charity/Non Profit |
PI Contribution | I was invited to chair a session on dengue at the annual meeting of the NTD consortium in Geneva, Switzerland. I organised discussions, took notes and produced a summary of discussion on future research needs for dengue control which will form part of a wider publication by the NTD modelling consortium. |
Collaborator Contribution | The NTD modelling consortium brought together modellers, implementation researchers and country programme managers to discuss unmet needs across different NTDs. They aim to produce a combined publication using the outputs from our separate discussion groups. |
Impact | Manuscript under preparation. Involved researchers and governmental personnel from modelling, epidemiology, clinicians and implementation research disciplines. |
Start Year | 2022 |
Description | ISNTDs OpenDengue presentation |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | In collaboration with the International Society for Neglected Tropical Diseases I organised a symposium titled "How increasingly public dengue data will transform research and control". This convenes experts from academia and dengue control programmes to discuss innovations in dengue disease control enabled by greater data transparency. It reached a broad audience thanks to the ISNTDs platform and led to raised interest (as evidence by direct emails to myself and the organisers) in the topic |
Year(s) Of Engagement Activity | 2023 |
URL | https://www.isntd.org/isntd-connect |
Description | Presentation at NASEM forum |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Policymakers/politicians |
Results and Impact | The Forum on Microbial Threats conducted a two-day workshop that identified lessons learned from previous outbreaks, outlined current arbovirus surveillance capacities, and described novel approaches to arbovirus mitigation. The workshop included perspectives from researchers, public health practitioners, and environmental management experts from across the globe with around 100 attendees in person and a further 50 online during the day with more watching the recorded sessions. Feedback from the even showed strong engagement from key policymakers at international health organizations. |
Year(s) Of Engagement Activity | 2023 |
URL | https://www.nationalacademies.org/event/40925_12-2023_mitigating-arboviral-threats-and-strengthening... |