How does SARS CoV-2 infect blood vessels?
Lead Research Organisation:
University of Sussex
Department Name: Sch of Psychology
Abstract
People who are severely affected by COVID-19 show symptoms of damage to their blood system, as well as to their lungs. For example, their blood may form lots of clots, which can cause damage to lots of different tissues in the body. Also other tissues than the lungs may be damaged in COVID-19, such as the heart, and it is likely that infection spreads to these tissues through the blood system. It will be important to know how blood vessels are infected by SARS CoV-2, the virus that causes COVID-19, to understand how damage to blood vessels and other tissues occurs. Our research will discover which types of cells in blood vessels become infected with SARS CoV-2, which will help us understand how blood vessels and other tissues become damaged in COVID-19, and suggest which cells to target to prevent this damage. The two most likely cells that might be infected are endothelial cells, which form the inside surface of blood vessels, or pericytes, which form part of the outer wall of very small blood vessels. In our work, we will use a special inactive version of SARS CoV-2 that cannot replicate but will label cells that have taken it up (become infected). We will apply this inactive version of the SARS CoV-2 virus to endothelial cells and pericytes that are grown in a dish, and see which cell type becomes most strongly labelled, indicating that it takes up the virus most strongly.
We then want to find out whether the blood vessels are differently infected in different organs, and whether this could explain some of the non-respiratory symptoms that people suffer from. To investigate this, we will use mice. However, SARS CoV-2 does not infect mouse cells, so we will use two approaches. In one set of experiments, we will use genetically altered mice that express the human version of the protein that binds SARS CoV-2. In another set of experiments we will use normal mice and a version of the inactive virus that has a mutation so it binds to the mouse version of the SARS CoV-2 receptor protein. By injecting the inactive virus into the bloodstream of these mice, we will discover which cells the virus infects in different tissues, including the heart and brain.
Finally, we want to find out what factors affect the severity of infection with SARS CoV-2. We will test whether existing inflammation makes it easier for SARS CoV-2 to infect blood vessels, by injecting mice with a bacterial protein that triggers an inflammatory response, before injecting the inactive SARS CoV-2 virus. We will also test whether a gene called APOE4, that seems to be linked with severe COVID-19 in humans, increases infection of blood vessels in our experimental mice.
Together, our experiments will discover how blood vessels become infected with SARS CoV-2, indicating which cells to target with treatments, and will test whether risk factors for severe COVID-19 illness could act by increasing the ability of SARS CoV-2 to infect cells on blood vessels.
We then want to find out whether the blood vessels are differently infected in different organs, and whether this could explain some of the non-respiratory symptoms that people suffer from. To investigate this, we will use mice. However, SARS CoV-2 does not infect mouse cells, so we will use two approaches. In one set of experiments, we will use genetically altered mice that express the human version of the protein that binds SARS CoV-2. In another set of experiments we will use normal mice and a version of the inactive virus that has a mutation so it binds to the mouse version of the SARS CoV-2 receptor protein. By injecting the inactive virus into the bloodstream of these mice, we will discover which cells the virus infects in different tissues, including the heart and brain.
Finally, we want to find out what factors affect the severity of infection with SARS CoV-2. We will test whether existing inflammation makes it easier for SARS CoV-2 to infect blood vessels, by injecting mice with a bacterial protein that triggers an inflammatory response, before injecting the inactive SARS CoV-2 virus. We will also test whether a gene called APOE4, that seems to be linked with severe COVID-19 in humans, increases infection of blood vessels in our experimental mice.
Together, our experiments will discover how blood vessels become infected with SARS CoV-2, indicating which cells to target with treatments, and will test whether risk factors for severe COVID-19 illness could act by increasing the ability of SARS CoV-2 to infect cells on blood vessels.
Technical Summary
Vascular symptoms including hypercoagulation are a key feature of severe COVID-19. They have been assumed to arise via infection of endothelial cells, however recent RNAseq analyses revealed that instead it is pericytes - vascular mural cells with intimate connections with endothelial cells and several vital roles in vascular function - which express the receptor, ACE2, which allows SARS CoV-2 to enter cells. Determining which cells mediate vascular and therefore extrapulmonary organ infection is vital for selecting optimal therapeutic interventions. Through our groups' expertise in vascular biology, virology and clinical haematology, we will identify whether pericytes or endothelial cells are the primary vascular target of SARS CoV-2.
We will utilise a pseudotyped SARS CoV-2 virus (PV), which undergoes a single round of infection and expresses a reporter protein in target cells. We will first compare the efficiency of infection in cultured human pericytes and endothelial cells, before injecting PV into mice and tracking reporter expression across pericytes and endothelial cells of different organs. As SARS CoV-2 does not bind murine ACE2, parallel experiments will test a PV mutated to bind murine ACE2 as well as mice expressing human ACE2. Because increased inflammation and APOE4 genotype both alter vascular permeability and are associated with severe COVID19, we will repeat these experiments in animals with LPS-induced inflammation or that express human ApoE3 or 4.
By identifying the cells that first become infected with SARS CoV-2 and the conditions that increase infection, this project will enable proper targeting of therapies to the relevant cells.
We will utilise a pseudotyped SARS CoV-2 virus (PV), which undergoes a single round of infection and expresses a reporter protein in target cells. We will first compare the efficiency of infection in cultured human pericytes and endothelial cells, before injecting PV into mice and tracking reporter expression across pericytes and endothelial cells of different organs. As SARS CoV-2 does not bind murine ACE2, parallel experiments will test a PV mutated to bind murine ACE2 as well as mice expressing human ACE2. Because increased inflammation and APOE4 genotype both alter vascular permeability and are associated with severe COVID19, we will repeat these experiments in animals with LPS-induced inflammation or that express human ApoE3 or 4.
By identifying the cells that first become infected with SARS CoV-2 and the conditions that increase infection, this project will enable proper targeting of therapies to the relevant cells.
Publications
Astin R
(2023)
Long COVID: mechanisms, risk factors and recovery.
in Experimental physiology
Astin R
(2023)
Long COVID: Mechanismen, Risikofaktoren und Genesung
in Kompass Pneumologie
Bonnar O
(2020)
First, tau causes NO problem.
in Nature neuroscience
Brebner L
(2020)
Extinction of cue-evoked food-seeking recruits a GABAergic interneuron ensemble in the dorsal medial prefrontal cortex of mice
in European Journal of Neuroscience
Brebner LS
(2020)
The Emergence of a Stable Neuronal Ensemble from a Wider Pool of Activated Neurons in the Dorsal Medial Prefrontal Cortex during Appetitive Learning in Mice.
in The Journal of neuroscience : the official journal of the Society for Neuroscience
Clarke D
(2021)
An open-source pipeline for analysing changes in microglial morphology.
in Open biology
Howarth C
(2021)
More than just summed neuronal activity: how multiple cell types shape the BOLD response.
in Philosophical transactions of the Royal Society of London. Series B, Biological sciences
McFall A
(2020)
UK consensus on pre-clinical vascular cognitive impairment functional outcomes assessment: Questionnaire and workshop proceedings.
in Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism
Description | We have found that vascular pericytes and endothelial cells are differentially infected by SARS CoV-2 with significant differences across variants of concern. We also found that inflammatory state and APOE genotype significantly affect infectivity causing a dramatic increase in infectivity of some but not all variants. These results have been submitted for publication. |
Exploitation Route | We have raised important questions that need answers, namely by what mechanisms is infectivity increased, and can this be prevented? Furthermore, if infectivity is reduced does this reduce the impact of acute or post-acute COVID19 disease? We have applied for more funding to answer these key questions, but hope that this direction of research will be valuable for others too in targeting treatments and research towards modulation of vascular infectivity. |
Sectors | Healthcare Pharmaceuticals and Medical Biotechnology |
Title | Inflammation Index Analysis Code |
Description | This is the analysis code for conducting the microglial analysis pipeline reported in https://royalsocietypublishing.org/doi/10.1098/rsob.210045. It allows extraction of numerous morphological features from 3D stacks of images of microglia and dimensionality reduction to calculate a sensitive index of altered morphology (e.g. in inflammation) from a training dataset that can be used on a separate dataset to detect differences in morphology across experimental conditions. |
Type Of Material | Data analysis technique |
Year Produced | 2021 |
Provided To Others? | Yes |
Impact | This pipeline entirely uses open access software so brings complex image analysis to many researchers including those otherwise inexperienced in image analysis who would otherwise rely on expensive commercial software solutions that are less powerful. |
URL | https://github.com/BrainEnergyLab/Inflammation-Index |
Title | Supporting Data for Gradual Not Sudden Change: Multiple Sites of Functional Transition Across the Microvascular Bed |
Description | The data provided was used to generate the figures in Shaw et al (2022); Gradual Not Sudden Change: Multiple Sites of Functional Transition Across the Microvascular Bed, Frontiers in Aging Neuroscience. Full details of how the data was generated and processed is provided in that paper. The ReadMe file attached to this record gives details on the data including measurements and column headings.A single Excel spreadsheet containing all the data points used for graphs in Figures 4-9 and Supplementary Figures 3-6 as individual work sheets (uploaded as .xlsx), and individual .csv files containing all the data points used for graphs in Figures 4-9 and Supplementary Figures 2-6 (for non-proprietary format). Abstract In understanding the role of the neurovascular unit as both a biomarker and target for disease interventions, it is vital to appreciate how the function of different components of this unit change along the vascular tree. The cells of the neurovascular unit together perform an array of vital functions, protecting the brain from circulating toxins and infection, while providing nutrients and clearing away waste products. To do so, the brain's microvasculature dilates to direct energy substrates to active neurons, regulates access to circulating immune cells, and promotes angiogenesis in response to decreased blood supply, as well as pulsating to help clear waste products and maintain the oxygen supply. Different parts of the cerebrovascular tree contribute differently to various aspects of these functions, and previously, it has been assumed that there are discrete types of vessel along the vascular network that mediate different functions. Another option, however, is that the multiple transitions in function that occur across the vascular network do so at many locations, such that vascular function changes gradually, rather than in sharp steps between clearly distinct vessel types. Here, by reference to new data as well as by reviewing historical and recent literature, we argue that this latter scenario is likely the case and that vascular function gradually changes across the network without clear transition points between arteriole, precapillary arteriole and capillary. This is because classically localised functions are in fact performed by wide swathes of the vasculature, and different functional markers start and stop being expressed at different points along the vascular tree. Furthermore, vascular branch points show alterations in their mural cell morphology that suggest functional specialisations irrespective of their position within the network. Together this work emphasises the need for studies to consider where transitions of different functions occur, and the importance of defining these locations, in order to better understand the vascular network and how to target it to treat disease. |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | This will allow other people to mine our data for their own research purposes, which may involve other studies into neurovascular function. |
URL | https://sussex.figshare.com/articles/dataset/Supporting_Data_for_Gradual_Not_Sudden_Change_Multiple_... |
Description | Article summary for the Science Media Centre |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | I wrote a summary, for the Science Media Centre, of the findings, interpretation and questions raised of an article that was widely taken up by the press (on Viagra protecting from Alzheimer's disease). Based quotes were used by several publications including The Sun, The Telegraph, the New York Post, reaching an approximate audience of 7 million. |
Year(s) Of Engagement Activity | 2021 |
URL | https://www.sciencemediacentre.org/expert-reaction-to-study-identifying-sildenafil-viagra-as-a-candi... |
Description | Brain Science Fair |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | We ran a drawing and research demonstration workshop as part of the Brain Science Fair, part of Bring Your Own Brain, Brighton. We invited participants to take part in a challenge to drink smoothies through different diameter straws, to illustrate how larger blood vessels can provide more blood to the brain. We also invited people to create their own art in response to research images and artistic interpretations of these images. |
Year(s) Of Engagement Activity | 2023 |
URL | https://meetings.bna.org.uk/BYOBBrighton/BYOBbrighton/brain-science-fair/ |
Description | Drawing workshop |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | As part of "Flow" a science-art collaboration between myself and artist William Lindley, we ran a drawing workshop in Brighton Library. We provided research images about our work into blood flow changes during dementia models and William's artistic responses to these images and invited people to respond to these in a variety of media. These images were then collected by William and incorporated into the final artwork. During the workshop we talked to participants about the links between brain and heart health and the importance of activity for reducing dementia risk. |
Year(s) Of Engagement Activity | 2023 |
URL | https://www.williamlindley.co.uk/index.php/installations/flow/ |
Description | FLOW - immersive installation Brighton |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | Alzheimer's Research UK funded generation of this immersive art installation (FLOW) by William Lindley, in collaboration with me. This was funded by the ARUK Inspire fund that aims to connect underserved communities with research in to Alzheimer's Disease and the increases in understanding of factors driving the disease. William was an artist in residence in our lab and drew inspiration from our research images and the method of collection, involving fluorescence microscopy, to generate an immersive art projection which we showed in the Quarter Gallery on Brighton Seafront. Our research shows increases in exercise improve neurovascular function which may underlie the role of exercise in reducing Alzheimer's Disease risk. To engage the public with the concept that increased physical activity reduces Alzheimer's Disease risk, William worked with me and colleagues at the University of Sussex to develop an interactive component to the installation - users wore watches that tracked step count and altered aspects of the art as their activity levels increased. A researcher was always present to answer questions and explain our research while visitors enjoyed the installation. We reached almost 500 people over a weekend and many people reported that they understood more about the link between cardiovascular health and Alzheimer's Disease after attending. |
Year(s) Of Engagement Activity | 2023 |
URL | https://www.williamlindley.co.uk/index.php/installations/flow/ |