Understanding and conserving tropical freshwater ecosystems
Lead Research Organisation:
Lancaster University
Department Name: Lancaster Environment Centre
Abstract
A healthy water environment is essential to life. Freshwater ecosystems occupy less than 1% of the Earth's surface, make up only 0.01% of all water, yet host ca. 10% of all known species. They also deliver vital ecosystem services, such as climate regulation and the provision of food, fuel, fibre, and water resources. Besides sustaining a disproportionately high share of global biodiversity, freshwater ecosystems are far more imperilled than terrestrial or marine realms nonetheless remain largely overlooked. This is critical in tropical regions, which are under intensive pressure from land use change, one of the main drivers of global biodiversity loss. In the Amazon, the world's largest and most biodiverse river basin, knowledge on the impacts of anthropogenic activities is largely insufficient.
Spreading across nine South American countries, the Amazon is of local and global relevance for the provisioning of myriad ecosystem services that are vital for human well-being. For instance, it is responsible for rainfall generation across South America, global climate regulation, and for 1/5 of the world's freshwater that reaches the oceans. However, much of the Amazon region is now severely threatened - it holds much of the land that could be available for agricultural expansion, which is being facilitated by new strains of crops, climatic change, and infrastructure development such as new and improved roads. As Brazil holds more than 60% of the Amazon, representing 50% of its territory, it has a large responsibility in its management and conservation.
One of the most poorly studied elements of the Amazonian freshwater ecosystems is how stream biodiversity is affected by human activities in agriculture landscapes. Small streams are the most extensive and widespread freshwater ecosystem in the basin, connect terrestrial and aquatic systems, host an outstanding biodiversity, support local livelihoods, accumulate multiple impacts that occur in their catchments, and have cascading effects on larger rivers. Therefore, the future of the Amazon river basin is dependent on the integrity of headwater streams. The main objective of my proposal is to further our understanding of the consequences of human impacts on tropical headwater streams, propose solutions to promote their conservation, and influence conservation and land use policy and practice in the Amazon.
I will achieve this in four integrated work packages (WP). WP1 includes collecting multispecies (fish and aquatic invertebrates) data from multiple streams in the Brazilian Amazon, building on a large-scale survey I led in 2010 that resulted in important publications (e.g. Science, Journal of Applied Ecology). This repeated assessment will be the first comprehensive evaluation of temporal changes in tropical stream biodiversity in agriculture landscapes. In WP2, I will explore the potential of cutting-edge approaches such as environmental DNA (eDNA) and the quantification of pesticides as valuable tools to advancing our understanding of human pressures in tropical streams. In WP3 I will develop an ambitious and pioneering field experiment on stream fragmentation to better understand the impacts of roads (i.e. culverts and associated infrastructure), one of the most neglected drivers of stream degradation. This will be the first field manipulative experiment to measure the impacts of stream fragmentation by roads in the tropics. In WP4, I will promote transformational change in the Amazon by integrating the information from previous WPs to estimate the extent of stream degradation across the Amazon River basin, develop mechanisms to promote sustainable stream management, and inform policy. I expect to substantially contribute to the science and practice of stream conservation by bringing about a step-change in our understanding in the tropics and linking these findings to urgent policy and management challenges in the Brazilian Amazon.
Spreading across nine South American countries, the Amazon is of local and global relevance for the provisioning of myriad ecosystem services that are vital for human well-being. For instance, it is responsible for rainfall generation across South America, global climate regulation, and for 1/5 of the world's freshwater that reaches the oceans. However, much of the Amazon region is now severely threatened - it holds much of the land that could be available for agricultural expansion, which is being facilitated by new strains of crops, climatic change, and infrastructure development such as new and improved roads. As Brazil holds more than 60% of the Amazon, representing 50% of its territory, it has a large responsibility in its management and conservation.
One of the most poorly studied elements of the Amazonian freshwater ecosystems is how stream biodiversity is affected by human activities in agriculture landscapes. Small streams are the most extensive and widespread freshwater ecosystem in the basin, connect terrestrial and aquatic systems, host an outstanding biodiversity, support local livelihoods, accumulate multiple impacts that occur in their catchments, and have cascading effects on larger rivers. Therefore, the future of the Amazon river basin is dependent on the integrity of headwater streams. The main objective of my proposal is to further our understanding of the consequences of human impacts on tropical headwater streams, propose solutions to promote their conservation, and influence conservation and land use policy and practice in the Amazon.
I will achieve this in four integrated work packages (WP). WP1 includes collecting multispecies (fish and aquatic invertebrates) data from multiple streams in the Brazilian Amazon, building on a large-scale survey I led in 2010 that resulted in important publications (e.g. Science, Journal of Applied Ecology). This repeated assessment will be the first comprehensive evaluation of temporal changes in tropical stream biodiversity in agriculture landscapes. In WP2, I will explore the potential of cutting-edge approaches such as environmental DNA (eDNA) and the quantification of pesticides as valuable tools to advancing our understanding of human pressures in tropical streams. In WP3 I will develop an ambitious and pioneering field experiment on stream fragmentation to better understand the impacts of roads (i.e. culverts and associated infrastructure), one of the most neglected drivers of stream degradation. This will be the first field manipulative experiment to measure the impacts of stream fragmentation by roads in the tropics. In WP4, I will promote transformational change in the Amazon by integrating the information from previous WPs to estimate the extent of stream degradation across the Amazon River basin, develop mechanisms to promote sustainable stream management, and inform policy. I expect to substantially contribute to the science and practice of stream conservation by bringing about a step-change in our understanding in the tropics and linking these findings to urgent policy and management challenges in the Brazilian Amazon.
Organisations
- Lancaster University (Lead Research Organisation)
- University of Sao Paulo (Project Partner)
- Federal University of Lavras (Project Partner)
- Stockholm Environment Institute (Project Partner)
- Usepa - US Environmental (Project Partner)
- University of Southampton (Project Partner)
- Embrapa (Brazilian Agri Res Corp) (Project Partner)
- Federal University of Para (Project Partner)
Publications

Carvalho DC
(2023)
Steps forward in biomonitoring 2.0: eDNA Metabarcoding and community-level modelling allow the assessment of complex drivers of Neotropical fish diversity.
in Global change biology

Carvalho RL
(2023)
Pervasive gaps in Amazonian ecological research.
in Current biology : CB

Couto T
(2024)
Translating science into actions to conserve Amazonian freshwaters
in Conservation Science and Practice

Valente-Neto F
(2025)
Cost-effective alternatives to facilitate biomonitoring and bioassessment of neotropical streams
in Science of The Total Environment
Description | Main achievements so far: Significant new knowledge generated: through the fellowship, my team generated the first genomic library for Amazonian stream fish including ca. 110 species. This information is not only critical to some objectives of my fellowship but is also a legacy for other future studies in the Amazon. Important new research questions opened up: the fellowship has enabled me to expand my research agenda into new areas not foreseen in the FLF application. This is the case of the ecology of stable isotopes, a powerful tool to investigate the trophic dynamics of species and their environments. This a promising area and a major knowledge gap for Amazonian streams. The stable isotopes data collected by my team is being analysed. Particularly noteworthy new research collaborations: my new collaboration with the NGO Amazon Environmental Research Institute (IPAM) in Brazil has been critical to the delivery of the proposed research. IPAM facilitated access to the Tanguro Ranch in Mato Grosso state, Brazil, where we will develop an innovative and ambitious field experiment on dam removal. This will be the first of its kind in the Amazon. |
Exploitation Route | Too early to say, I still have 18 months of fellowship and potentially other 3 years of renewal. |
Sectors | Agriculture Food and Drink Education Environment Government Democracy and Justice |
Description | Engagement Fund |
Amount | £2,500 (GBP) |
Organisation | Lancaster University |
Sector | Academic/University |
Country | United Kingdom |
Start | 11/2023 |
End | 07/2024 |
Description | GCBC: Enabling large-scale and climate-resilient forest restoration in the Eastern Amazon |
Amount | £913,332 (GBP) |
Organisation | Department For Environment, Food And Rural Affairs (DEFRA) |
Sector | Public |
Country | United Kingdom |
Start | 11/2024 |
End | 10/2027 |
Description | PELD-RAS: Avaliando a resiliência da biodiversidade e o funcionamento ecológico das florestas antropizadas do leste da Amazônia |
Amount | R$ 299,360 (BRL) |
Organisation | National Council for Scientific and Technological Development (CNPq) |
Sector | Public |
Country | Brazil |
Start | 01/2024 |
End | 12/2030 |
Description | PhD studentship: Temporal changes in tropical freshwater biodiversity in forest-agriculture frontiers |
Amount | £29,122 (GBP) |
Organisation | Lancaster University |
Sector | Academic/University |
Country | United Kingdom |
Start | 08/2023 |
End | 09/2027 |
Description | Pro-Amazônia: CAPOEIRA - Centro Avançado em Pesquisas SOcio-EcológIcas para a Recuperação Ambiental da Amazônia |
Amount | R$ 13,079,626 (BRL) |
Organisation | National Council for Scientific and Technological Development (CNPq) |
Sector | Public |
Country | Brazil |
Start | 02/2025 |
End | 01/2028 |
Description | Event "For Dom, Bruno & the Amazon" |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Other audiences |
Results and Impact | Online talk entitled "The importance of Amazonian streams for the future of the largest river basin on Earth" given at the event "For Dom, Bruno and the Amazon" which was an exhibition and a month of activities held in November 2022 across the Lancaster district (and online), led by Halton Mill. The online talk was held in partnership with the Lancaster Continuing Learning Group aimed at supporting older people's learning and Lancaster University's ongoing widening access and participation agenda. |
Year(s) Of Engagement Activity | 2022 |
URL | https://haltonmill.org.uk/dombruno/ |
Description | Interview for podcast "Morecambe Bay" |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | This was a request related to my participation in the event "For Dom, Bruno and the Amazon". |
Year(s) Of Engagement Activity | 2022 |
URL | https://anchor.fm/morecambebaypodcast/episodes/Defending-the-Amazon-e1q163k |
Description | Interview for podcast 'PROTEJA Brasil' |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | The podcast (in Portuguese) was produced by www.proteja.org, an iniciative to join efforts for protected areas in Brazil. It is a multi-stakeholder initiative that facilitates society's engagement in advocacy, conservation and sustainable development actions. The podcast "Proteja Brasil" is one of their products and I was interviewed for the episode "Protected areas in aquatic environments". The podcast was also advertised on Instagram in a joint post by Proteja (1.9k followers) and the NGO IPAM Amazônia (24.5k followers): https://www.instagram.com/reel/CifdVsWAYaw/?utm_source=ig_web_copy_link |
Year(s) Of Engagement Activity | 2022 |
URL | https://open.spotify.com/episode/3iQ7pX4LcZiEsx1JQ6P3u8 |
Description | Media interview for "O Liberal" |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | Interview for the local newspaper "O Liberal" that is based in the municipality of Belém, Brazil. The interview was used in the newspaper article "Insects - small protectors of the forest" and in the accompanying podcast. The news article is about the key role played by insects in Amazonian terrestrial and freshwater ecosystems. |
Year(s) Of Engagement Activity | 2022 |
URL | https://www.liberalamazon.com/pt-BR/meio-ambiente/news/pequenos-protetores-da-floresta |
Description | Media interview for Mongabay |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | A group of journalists joined us during our fieldwork in the Amazon and published a journalistic article about the project and the wider importance and threats to Amazonian streams: "Why the Amazon's small streams have a major impact on its grand rivers" (Mongabay). The article contributed to raising awareness on the very neglected Amazonian streams. |
Year(s) Of Engagement Activity | 2024 |
URL | https://news.mongabay.com/2024/01/why-the-amazons-small-streams-have-a-major-impact-on-its-grand-riv... |
Description | Science dissemination: fish diversity of Amazonian streams |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | Outputs: We created three dissemination products: memory game, wall poster, and laminated booklet. We used high-resolution photos of 56 fish species taken during our field expedition in 2023 and gathered information on their natural history. We distributed 400 games, 100 posters and 100 booklets. Activities: Science dissemination event with indigenous communities from Bragança/Marituba and the Munduruku/ Taquara reserves on the lower Tapajós River, Santarém, Brazil. The event was co-organised with indigenous leaders and attended by ca. 100 people (60 school children (aged 6-8) and 40 indigenous members of the community and teachers). The event started with a speech from the indigenous leader and was followed by the distribution of the dissemination materials, and a debate about the fish diversity of Amazonian streams and how scientists study these ecosystems. Children and adults engaged in questions, shared their perspectives and played the memory game. Distribution of dissemination material to the Brazilian institute for biodiversity conservation (i.e. ICMBio) and 12 rural schools in Santarém region, Brazil. We visited and distributed the dissemination material to other groups in the region of Santarém: ICMBio managers of the FLONA Tapajós (National Forest of Tapajós) and teachers/head teachers from schools near the indigenous communities. Outcomes: The activities helped to build trust and engagement with local communities, and to increase awareness on the importance of Amazonian streams to biodiversity. We received several positive feedback during and after the dissemination and requests to repeat the activities in the region. For instance, Eldianne Poryng Etê Santos de Sousa, indigenous teacher at the Munduruku Indigenous School ISU IWIWI'AP Teachers mentioned "I never imagined that we had so many species of fish in these streams"; "The children loved the game! There are many fish that they know by different names and others that they had never seen before"; "There was a boy who said that when he grows up he will be a fish scientist." Jane Correa Santos, who teaches at the same school, highlighted that children can learn important issues through the game: "Children need to know about species and preserve the environment in which they live to ensure the maintenance of local biodiversity,". Children from the rural schools said: "I met the best fish in the world," David, 6y. "I didn't know the pencil fish existed," said Benjamin, 7 years old. "I really liked the cichlid, we fish them," said Carlos, 7y. |
Year(s) Of Engagement Activity | 2024 |
Description | World Fish Migration Day: Free flowing rivers for fish |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | This event consisted on reading a book and talking to 50 pre-school children (age 3 and 4) at the Lancaster Univsersity Pre-School (Lancaster, UK) about the importance of free flowing rivers for fish. It was part of the '2024 World Fish Migration Day', an annual global awareness campaing to emphasize the importance of rivers for biodiversity and humans. The children were very excited to listen about the importance of rivers, tell about the rivers they knew of and to ask questions about River Lune, the river that runs through Lancaster. |
Year(s) Of Engagement Activity | 2024 |
URL | https://worldfishmigrationday.com/?s=free+flowing+rivers+for+fish |