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Mechanical robustness during tissue development and repair

Lead Research Organisation: UNIVERSITY COLLEGE LONDON
Department Name: Lab for Molecular Cell Bio MRC-UCL

Abstract

An organ must be of the correct size and shape to effectively perform its functions. Mechanical forces are known to be important in shaping organs. For example, athletes have enlarged hearts due to the extra forces that the heart is subjected to during frequent exercise, and astronauts lose bone mass due to the lack of gravitational force in space to stimulate bone growth. However, there are constant fluctuations in forces from the environment, such as those associated with daily motion, or a trip and a fall. How does our body stop itself from constantly responding to all these fluctuating forces and change shape constantly? These fluctuating forces can sometimes be so extreme that they can cause damage to our organs, such as the breaking of a bone after an accident or the cut of the skin from a knife wound.

Not all fluctuations are bad. Small fluctuations (or 'noise') can be important in the control of both biological and non-biological systems, and in their ability to respond to damage. For example, a building that wobbles slightly (but not excessively) is better at withstanding an earthquake. After breaking a bone, gentle motion stimulates bone synthesis, but excessive motion disrupts repair.

It is currently unknown how our body organs respond to different levels of external forces, and the potential beneficial or detrimental consequences of these forces. How do organs cope with fluctuating mechanical noises every day and manage to stay in their correct size and shape? How do they repair themselves accurately and quickly after a wound? What is the role of mechanical noise (such as those applied during physiotherapy) during wound repair? How do tissues know when to stop repairing after it has completely healed to minimize scarring and prevent the development of overgrowths and cancer? These are examples of questions we will address during this project. We will use my lab's expertise and approaches from different scientific fields: biology, physics, mathematics, and computer science, to answer these questions. This work will be important for understanding the diversity of biological form in nature, treating diseases affecting tissue size and shape, such as cancer, and in improving wound repair mechanisms to minimise scarring and improve our long term health.

Technical Summary

Tissues must develop and maintain their correct morphology to function effectively throughout life. Mechanical forces play an instructive role in tissue morphogenesis, yet tissues are constantly exposed to additional fluctuating external forces, ranging from the continuous 'noise' of daily motion to the extreme perturbations associated with wounding. Despite this, most tissues develop to their target morphology that they maintain and repair throughout life. Tissues, however, are less able to cope with extreme mechanical perturbations, such as a wound, especially in the presence of additional mechanical fluctuations, which can lead to scars. How do tissues respond to different external mechanical fluctuations to achieve tissue robustness during development and repair?

We aim to determine:
1. How tissues buffer mechanical 'noise' during development.
2. How the physical properties of tissues enable effective repair after a wound.
3. The role of mechanical noise during tissue repair.

We will use a combination of genetics, imaging, biophysics and mathematics to address these aims. Our novel tools to measure, manipulate and model the mechanical forces impacting on tissues put us in a unique position to carry out this programme. This work will determine the impact of mechanical stress on tissue robustness, increase our understanding of the diversity of biological form, improve the treatment of developmental defects affecting tissue morphology, and aid the design of new therapies for more efficient and seamless wound repair.

Publications

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Blackie L (2024) The sex of organ geometry in Nature

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Khalilgharibi N (2023) Line-scanning speeds up Brillouin microscopy in Nature Methods

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Lim SE (2024) Forced back into shape: Mechanics of epithelial wound repair. in Current opinion in cell biology

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Mao Y (2022) For Special Issue: Tissue size and shape. in Seminars in cell & developmental biology

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Mao Y (2024) Mechanical state transitions in the regulation of tissue form and function. in Nature reviews. Molecular cell biology

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Marshall W (2024) Where physics and biology meet. in Current biology : CB

 
Description "The form and function of stochastic asymmetry in embryonic neural development".
Amount £414,116 (GBP)
Funding ID RPG-2024-147 
Organisation The Leverhulme Trust 
Sector Charity/Non Profit
Country United Kingdom
Start 09/2024 
End 10/2027
 
Title Napari: EpiTools 
Description We ported our image analysis software EpiTools to Napari, after given Chan Zuckerberg Initiative Funding to do so. 
Type Of Material Improvements to research infrastructure 
Year Produced 2023 
Provided To Others? Yes  
Impact Many researchers are now using it to analyse their own data 
URL https://chanzuckerberg.com/science/programs-resources/imaging/napari/epitools-a-napari-plugin-for-qu...
 
Title Source data for 'The sex of organ geometry' Blackie, Gaspar et al, 2024, Nature 
Description Source data for 'The sex of organ geometry' Blackie, Gaspar et al, 2024, Nature.Contains microCT scans as .nii.gz files, gut centrelines as .swc and .trace files and organ segmentations as .obj mesh files for genotypes and figures in the paper. See readme file for which genotypes are present in which figures. 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
URL https://crick.figshare.com/articles/dataset/Source_data_for_The_sex_of_organ_geometry_Blackie_Gaspar...
 
Description 3D vertex model of epithelial wound repair 
Organisation Polytechnic University of Catalonia
Country Spain 
Sector Academic/University 
PI Contribution Gathering experimental data for effects of microgravity on cell and tissue tension
Collaborator Contribution Supervise postdoc in technical development and mathematics/physics of 3D vertex / finite element modeling
Impact Multidisciplinary - physics, biology, engineering, computer science
Start Year 2022
 
Description Modelling collagenIV remodelling 
Organisation Institute of Science and Technology Austria
Country Austria 
Sector Academic/University 
PI Contribution Imaging of ECM and mechanical perturbations of ECM
Collaborator Contribution Course grained modelling of ECM polymers
Impact Papers in prep
Start Year 2020
 
Description Using synthetic hydrogels to study organoid growth 
Organisation King's College London
Country United Kingdom 
Sector Academic/University 
PI Contribution Cell mechanical measurements and imaging
Collaborator Contribution Providing hydrogel expertise and reagents
Impact Papers in prep. Engineering Biology
Start Year 2020
 
Description London Science Museum Lates Event 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact I collaborated with visual arts artists to transform biology data into virtual reality and immerse reality visuals and held an evening exhibition at the London Science Museum. This was attended by hundreds of visitors who immersed themselves in the beauty of science.
Year(s) Of Engagement Activity 2024
URL https://www.sciencemuseum.org.uk/see-and-do/create-lates
 
Description Riverley School British Science Week Visit/Talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact I give a talk to 2x 30 student each classes, annually, to inspire students about cell biology
Year(s) Of Engagement Activity 2023,2024
 
Description School visit to the LMCB Lab 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact 2 x 30 students, aged 10-11, were given a lab tour of the LMCB, and given chances to do hands on simple experiments to experience what being a scientist is like.
Year(s) Of Engagement Activity 2023