📣 Help Shape the Future of UKRI's Gateway to Research (GtR)

We're improving UKRI's Gateway to Research and are seeking your input! If you would be interested in being interviewed about the improvements we're making and to have your say about how we can make GtR more user-friendly, impactful, and effective for the Research and Innovation community, please email gateway@ukri.org.

Rare early onset lower urinary tract disorders

Lead Research Organisation: University of Manchester
Department Name: School of Biological Sciences

Abstract

The problem.
Many children in the UK suffer with significant bladder problems that result in bed-wetting, incontinence, urine infections and even severe kidney damage. In fact, rare bladder conditions are the commonest cause of kidney failure in children who can only be kept alive by dialysis and transplantation. Up to one in three children with severe bladder emptying problems also have constipation. Bowel and bladder problems have more impact than almost any other medical condition on children's self-esteem, education and social relationships.
Our approach to the problem.

Genes are the inherited instructions in our cells providing the information for how our bodies develop. We know that many genes are important in how the bladder and ureters (tubes connected to the kidneys) develop and work. We have discovered changes in a number of these genes in children with rare severe bladder problems. However, we have collected samples and clinical information from many children where we still do not have a genetic answer. This represents a significant unmet need. Through this rare disease node we will create a network of clinicians and researchers across the UK to collect samples and information from children affected by these conditions creating a registry of affected individuals and genetic samples for further study. We will work as a collaborative team to address these challenging problems and train and support the next generation of researchers and clinicians to care for affected families.

We propose three answers: 1. to use new types of genetic analysis, where we can study structural changes in the genetic material in a cell, to find the causes of severe inherited bladder problems; 2. to look at how genes are switched on and off in the bladder and ureters in children with a severe condition called bladder exstrophy from samples taken at surgery and compare these patterns to healthy children. This will give us an insight into how the organs develop and how and why this may go wrong; and 3. we will look at new exciting ways to deliver genes to the body so that they may correct these conditions using an approach called gene therapy.

Finding the responsible genes will allow us to: 1. give families the reason for their children's problems; 2. do simple genetic tests on other family members to see if they may require check-ups to detect and prevent the progression to severe bladder and kidney disease; and 3. start to understand the reasons that children are affected by these problems which will help to develop novel treatments. Furthermore, understanding rare inherited types of bladder problems can provide reasons as to why children have more common problems like bed-wetting and urine infections, which affect nearly one million UK children.

We will organise meetings with affected families to discuss our work and seek input to guide the way that we approach these studies and share information about them through charities like ERIC, the Children's Bowel and Bladder Charity. The 2018 NHS England guidance on Excellence in Continence Care highlights the inequalities and need for improvements in clinical care for individuals with urinary and bowel incontinence.
Because severe inherited bladder disorders can affect multiple family members their impact is greater. As most are inherited in an 'autosomal recessive' pattern (a genetic change inherited from each unaffected parent), these conditions are more common in communities where marriage within families occurs. In the UK there is a significant burden in families of Pakistani origin. In the Health Profile for England Report 2017, there was a threefold increased infant mortality in British Pakistanis and other measures of poorer health in this community. Therefore, supporting research in these disorders will have a major health benefit in a disadvantaged community.

Technical Summary

In our proposed rare early onset lower urinary tract (REOLUT) node, we propose three initial projects to address key questions underpinning REOLUT disorders. These studies will form the foundation for major research funding applications; make an immediate impact for affected individuals and their families; and form the basis for future related research into the causes and potential treatment of REOLUT disorders. First, we will use a combination of techniques to determine the genes and genetic mechanisms resulting in REOLUT disorders. We will work with RaDaR to create a national registry to ascertain affected individuals, collecting clinical data and samples; we will interrogate whole genome sequence data to identify novel causes of REOLUT disorders; generate methylation profiles of samples taken from patients with bladder exstrophy and study the impact of structural genomic variants on REOLUT disorders. Second, we will use novel techniques to examine the single cell expression patterns from bladder tissues taken at surgery from patients with bladder exstrophy to create an atlas to more fully understand the pathobiology of this devastating disease. Third, we will explore techniques to transfer genes to human cells using urofacial syndrome as an exemplar to correct function and as a precursor to clinical trials of gene therapy in affected children. Each of these projects address the major challenges faced by individuals affected by the REOLUT disorders by aiming to improve diagnosis, understanding the underlying causes, and informing new treatments and they have been supported in discussions with patient advocates and the clinical community. The node will create a vibrant national community for training the next cadre of researchers and clinicians in REOLUT disorders and a forum to drive forward major advances in our understanding and treatment of these under-researched conditions.

Publications

10 25 50

 
Description Parliamentary reception at the House of Commons hosted by the Urology Foundation
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
URL https://www.theurologyfoundation.org/about-us/media/news/calling-for-action-on-continence-care-in-pa...
 
Guideline Title Urofacial syndrome (UFS) (Ochoa syndrome)
Description Urofacial syndrome (UFS) (Ochoa syndrome) Clinical Guidelines
Geographic Reach Multiple continents/international 
Policy Influence Type Citation in clinical guidelines
URL https://rarechromo.org/disorder-guides/
 
Description A human slice model to understand the role of fibrosis in children with bladder exstrophy
Amount £491,139 (GBP)
Funding ID MR/X030946/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 03/2024 
End 02/2027
 
Description A spatial transcriptomic map of urinary tract development
Amount £20,000 (GBP)
Organisation Rosetrees Trust 
Sector Charity/Non Profit
Country United Kingdom
Start  
 
Description Characterising lymphatics in bladders affected by posterior urethral valves using advanced 3D imaging techniques
Amount £60,000 (GBP)
Organisation Urology Foundation 
Sector Charity/Non Profit
Country United Kingdom
Start  
 
Description Gene therapy for early-onset genetic bladder disease
Amount £45,000 (GBP)
Organisation Urology Foundation 
Sector Charity/Non Profit
Country United Kingdom
Start  
 
Description Investigating the interactions between lymphatic vasculature and the tumour microenvironment in Wilms tumour
Amount £241,000 (GBP)
Organisation Little Princess Trust 
Sector Charity/Non Profit
Country United Kingdom
Start  
 
Description LifeArc Translational Research Centre for Rare Kidney Diseases
Amount £9,400,000 (GBP)
Organisation LifeArc 
Sector Charity/Non Profit
Country United Kingdom
Start  
 
Description Manchester NIHR Biomedical Research Centre
Amount £60,000,000 (GBP)
Funding ID NIHR203308 
Organisation National Institute for Health Research 
Sector Public
Country United Kingdom
Start 12/2022 
End 11/2027
 
Description Pump prime award from Imperial College London Centre for Paediatrics and Child Health to generate preliminary data for clinician scientist fellowship
Amount £5,000 (GBP)
Organisation Royal College of Paediatrics and Child Health (RCPCH) 
Sector Academic/University
Country United Kingdom
Start 08/2025 
End 09/2026
 
Description Treating the autonomic neural pathobiology of a devastating early onset genetic urinary bladder disease
Amount £1,050,977 (GBP)
Funding ID MR/Z504452/1 
Organisation Medical Research Council (MRC) 
Sector Public
Country United Kingdom
Start 09/2024 
End 10/2027
 
Description Treating the bladder to protect the kidney: advanced therapies for early onset lower urinary tract conditions
Amount £85,074 (GBP)
Funding ID ST_006_20240626 
Organisation Kidney Research UK 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2025 
End 01/2028
 
Title Normalised gene expression, miRNA expression and urinary transcriptomic data from Human Kidney Tissue Resource (HKTR) 
Description Normalised kidney gene expression data from HKTR (hktr_gene_expression.txt); normalised kidney microRNA expression data from HKTR (hktr_mirna_expression.txt); normalised urinary data from HKTR (urinary-log2-tpm-scaled.rds). The rds file could be read with readRDS function in R.If you use this data, please cite the following paper: Xu, X., Khunsriraksakul, C., Eales, J.M. et al. Genetic imputation of kidney transcriptome, proteome and multi-omics illuminates new blood pressure and hypertension targets. Nat Commun 15, 2359 (2024). https://doi.org/10.1038/s41467-024-46132-y 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Normalised_gene_expression_miRNA_expression_and_u...
 
Title Sample-size-balanced Genotype-Tissue Expression (GTEx) v8 prediction models for transcriptome-wide association studies (TWAS) 
Description Gene expression prediction model - 49 Genotype-Tissue Expression (GTEx, v8) tissues. More details about the models could be found in Methods "Transcriptome-wide association studies across 49 human cell-types and tissues" in paper "Genetic imputation of kidney transcriptome, proteome and multi-omics illuminates new blood pressure and hypertension targets" (https://doi.org/10.1038/s41467-024-46132-y).If you use this data, please cite the following paper: Xu, X., Khunsriraksakul, C., Eales, J.M. et al. Genetic imputation of kidney transcriptome, proteome and multi-omics illuminates new blood pressure and hypertension targets. Nat Commun 15, 2359 (2024). https://doi.org/10.1038/s41467-024-46132-y 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/Sample-size-balanced_GTEx_v8_TWAS_models/24871794
 
Title Summary statistics of UK Biobank blood pressure genome-wide association studies (GWAS) using 337,422 unrelated white European individuals 
Description Three blood pressure traits were analysed: systolic blood pressure (SBP), diastolic blood pressure (DBP) and pulse pressure (PP; the difference between SBP and DBP). Mean SBP and DBP values from automated values were calculated. After calculating blood pressure values, SBP and DBP were adjusted for medication use by adding 15 and 10 mm Hg to their values, respectively, for individuals reported to be taking blood pressure-lowering medication.For the UK Biobank genome-wide association studies (GWAS), we performed linear mixed model (LMM) association testing under an additive genetic model of the three continuous, medication-adjusted blood pressure traits (SBP, DBP, PP) for all measured and imputed genetic variants (Data Field-22828) with minor allele frequency (MAF) >=1% and imputation score>=0.3 in dosage format using the BOLT-LMM (v2.4.1) software. Covariates were age, age2, sex, BMI, genotyping array and 10PCs. Genomic inflation was not applied to the GWAS summary statistics.Sample QC was described below:We included up to 337,422 individuals from UK Biobank for the purpose of this project. We followed UK Biobank sample-based quality control criteria (Nature 2018;562:203-209); excluded were samples/individuals based on the following criteria: (i) outliers in heterozygosity and missingness, (ii) self-reported gender not consistent with genetic data inferred gender (ii) sample call rate (computed using probesets internal to Affymetrix) <97% or the resolution of the distributions of intensity 'contrast' values <0·82, (iii) carriers of sex chromosomal abnormalities (configurations other than XX or XY), (iv) subjects who had cryptic relatedness with other individuals, or (v) individuals of non-white British genetic ancestry. If you use this data, please cite the following paper: Xu, X., Khunsriraksakul, C., Eales, J.M. et al. Genetic imputation of kidney transcriptome, proteome and multi-omics illuminates new blood pressure and hypertension targets. Nat Commun 15, 2359 (2024). https://doi.org/10.1038/s41467-024-46132-y 
Type Of Material Database/Collection of data 
Year Produced 2024 
Provided To Others? Yes  
URL https://figshare.manchester.ac.uk/articles/dataset/UK_Biobank_blood_pressure_GWAS_summary_statistics...
 
Description 1st RDR UK Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Presented REOLUT work at the 1st RDR UK Annual Conference
Year(s) Of Engagement Activity 2024
URL https://rd-research.org.uk/uncategorized/rare-disease-research-uk-annual-conference/
 
Description 1st REOLUT Conference 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact All Node team members organised, hosted & presented at the 1st Annual Meeting of the REOLUT Node.
Year(s) Of Engagement Activity 2024
URL https://rd-research.org.uk/uncategorized/event-1st-scientific-meeting-of-the-mrc-rare-early-onset-lo...
 
Description 34th European Society of Pediatric Urology Talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Adrian Woolf gave a talk at the 34th European Society of Pediatric Urology titled "Rare early onset lower urinary tract disorders: from genetics to gene therapy" on 17th April 2024 at Naples, Italy.
Year(s) Of Engagement Activity 2024
 
Description 57th European Society of Human Genetics Talk 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Mel Chan and Neil Roberts gave a talk titled "The urinary bladder: from discovery to treatment" in a dedicated symposium at the 57th ESHG Conference, chaired by Bill Newman on 1st June 2024 at Berlin, Germany.
Year(s) Of Engagement Activity 2024
 
Description Alder Hey Children's Hospital Paediatric Urology meeting talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Mel Chan presented REOLUT/RaDaR work to paediatric urologists and nephrologists at the Alder Hey Children's Hospital to encourage patient recruitment into the GenRALT study on 8th May 2024.
Year(s) Of Engagement Activity 2024
 
Description American Society of Nephrology Talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact David Long gave a talk at the American Society of Nephrology titled "Dynamics and Heterogeneity of Kidney Lymphatics in Organogenesis" on 4th November 2023 at Philadelphia, US.
Year(s) Of Engagement Activity 2023
 
Description BAPU Annual Congress Talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Bill Newman gave a talk titled "Rare early Onset Lower Urinary Tract Disorders-REOLUT NIHR/MRC Node" at the BAPU Annual Congress on 5th September 2024 at Belfast, Ireland.
Year(s) Of Engagement Activity 2024
 
Description Ciliaren meeting Feb 24 Newcastle 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Presentations by Dr Melanie Chan and Dr Neil Roberts from REOLUT to members of other MRC/NIHR Research node - Newcastle Feb 2024
Year(s) Of Engagement Activity 2024
 
Description ERIC Paediatric Continence Care Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Bill Newman presented a talk at the ERIC Paediatric Continence Care Conference on 14th October 2024 at Birmingham, UK.
Year(s) Of Engagement Activity 2024
 
Description Kidney Research UK 'Primary Prevention of Disease' symposium 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Adrian Woolf presented a talk titled "Growing kidneys and gene therapies: party tricks or realities" at the Kidney Research UK 'Primary Prevention of Disease' symposium on 16th May 2024 at London, UK. David Long also presented REOLUT work.
Year(s) Of Engagement Activity 2024
URL https://www.kidneyresearchuk.org/2024/05/21/identifying-priorities-at-the-primary-prevention-worksho...
 
Description Mario Negri Research Institute Talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact Adrian Woolf gave a talk at the Mario Negri Research Institute titled "Growing kidneys and gene therapies: party tricks or realities?" on 11th December 2024 at Bergamo, Italy.
Year(s) Of Engagement Activity 2024
 
Description NW London Paediatric Urology Meeting 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Mel Chan presented REOLUT/RaDaR work to paediatric urologists and nephrologists at the NW London Paediatric Urology meeting to encourage patient recruitment into the GenRALT study on 24th January 2024.
Year(s) Of Engagement Activity 2024
 
Description National Nephrology Training Day Talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Mel Chan presented REOLUT/RaDaR work to paediatric urologists and nephrologists at the National Nephrology Training Day for General Paediatricians to encourage patient recruitment into the GenRALT study on 22nd November 2024.
Year(s) Of Engagement Activity 2024
 
Description Nephrogenesis Workshop 2024 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact The REOLUT Team hosted the 24th Annual European Nephrogenesis Workshop at GOSH, London. Neil Roberts gave a talk titled "Development, disease and definitive therapies in the lower urinary tract".
Year(s) Of Engagement Activity 2024
URL https://www.ucl.ac.uk/child-health/events/2024/jun/24th-european-nephrogenesis-workshop
 
Description Node Showcase Session 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Presented REOLUT work at RDR UK's Node Showcase Session held online on 20th September 2024.
Year(s) Of Engagement Activity 2024
 
Description Royal College of Paediatric Talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Bill Newman gave a REOLT talk at the Royal College of Paediatrics at Glasgow, UK.
Year(s) Of Engagement Activity 2024
 
Description Royal Manchester Children's Hospital Seminar Talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Bill Newman presented REOLUT work to paediatric urologists and nephrologists at the Royal Manchester Children's Hospital to encourage patient recruitment into the GenRALT study on 20th June 2024.
Year(s) Of Engagement Activity 2024
 
Description Talk at 56th Annual Meeting of ESPN 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Adrian Woolf presented a talk titled "Indications for genetic testing in early onset lower urinary tract disorders" and a working group titled "CAKUT: a fundamental perspective" on September 24th-25th 2024, at Valencia, Spain.
Year(s) Of Engagement Activity 2024
 
Description Talk at Manchester Dysmorphology Conference - Dr Neil Roberts 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Talk at international rare disease/genomics conference
Title: Human HPSE2 gene transfer ameliorates bladder pathophysiology in a mutant mouse model of urofacial syndrome
Year(s) Of Engagement Activity 2023
URL https://www.mrcc.org.uk/news-events/manchester-dysmorphology-conference-2023/
 
Description Talk at Manchester Dysmorphology Conference - Prof. Adrian Woolf 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Talk at international rare disease/genomics conference.
Title: Hepatocyte nuclear factor 1B is a pleiotropic human organogenesis gene that orchestrates kidney tubule differentiation
Year(s) Of Engagement Activity 2023
URL https://www.mrcc.org.uk/news-events/manchester-dysmorphology-conference-2023/
 
Description Talk at the European Society of Pediatric Nephrology - Prof. Adrian Woolf 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Talk at international rare disease/genomics conference
Title: Growing kidneys and gene therapies: party tricks or realities?
Year(s) Of Engagement Activity 2023
URL https://www.espn-online.org/
 
Description Talk at the International Pediatric Nephrology Association & European Society of Pediatric Nephrology - Prof. Adrian Woolf 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Talk at international rare disease/genomics conference
Title: Genetics for Nephrologists
Year(s) Of Engagement Activity 2023
URL https://www.espn-online.org/
 
Description Talk at the UK Renal Genetics Educational Workshop - Prof. Adrian Woolf 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Talk at national rare disease/genomics workshop
Title: Rare early onset lower urinary tract (REOLUT) disorders with genetic bases
Year(s) Of Engagement Activity 2023
 
Description York Biomedical Research Institute Seminar Series Talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact Neil Roberts gave a talk at the York Biomedical Research Institute Seminar Series titled "Gene therapy for urofacial syndrome" on 27th September 2024 at York, UK.
Year(s) Of Engagement Activity 2024