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Director of Functional Genomics Initiative

Lead Research Organisation: UNIVERSITY OF EXETER
Department Name: Clinical and Biomedical Sciences

Abstract

The UK has huge strengths in functional genomics, and this is an exciting time for research aimed at characterising the mechanisms by which genetic variation impacts on cellular phenotype across developmental stages and physiological systems. Technological advances mean we can now sequence genomes at unprecedented scale and accuracy, and also profile epigenetic regulation and transcriptional variation in individual cells. Novel experimental methods including gene-editing approaches, the development of disease-relevant cell-based model systems, spatial transcriptomics and high-throughput multimodal screening, alongside developments in data science and artificial intelligence, mean that now is the perfect time to launch an initiative aimed at systematically characterising the functional consequences of disease-associated genetic variation.

The UKRI functional genomics initiative will catalyse discoveries into the mechanistic underpinnings of health and disease by identifying causal variants and modelling their impact in disease-relevant cell-types across key stages of development. It will foster and facilitate innovation and collaboration among multidisciplinary teams, creating a dynamic and nimble ecosystem that accelerates the translation of functional genomic research into tangible benefits for health and well-being. The initiative will also capitalise on the UK's exceptional infrastructure for translating biomedical research into improved clinical care. For example, by linking with the network of NIHR Biomedical Research Centres, there is the potential to rapidly develop genomic biomarkers for early diagnosis and facilitate patient stratification for clinical trials. Ultimately, the initiative has the potential to leave a lasting legacy, building capacity in functional genomics in the UK and providing support for the next generation of researchers in this area.

Technical Summary

The UK has huge strengths in functional genomics, and this is an exciting time for research aimed at characterising the mechanisms by which genetic variation impacts on cellular phenotype across developmental stages and physiological systems. Technological advances mean we can now sequence genomes at unprecedented scale and accuracy, and also profile epigenetic regulation and transcriptional variation in individual cells. Novel experimental methods including gene-editing approaches, the development of disease-relevant cell-based model systems, spatial transcriptomics and high-throughput multimodal screening, alongside developments in data science and artificial intelligence, mean that now is the perfect time to launch an initiative aimed at systematically characterising the functional consequences of disease-associated genetic variation.

The UKRI functional genomics initiative will catalyse discoveries into the mechanistic underpinnings of health and disease by identifying causal variants and modelling their impact in disease-relevant cell-types across key stages of development. It will foster and facilitate innovation and collaboration among multidisciplinary teams, creating a dynamic and nimble ecosystem that accelerates the translation of functional genomic research into tangible benefits for health and well-being. The initiative will also capitalise on the UK's exceptional infrastructure for translating biomedical research into improved clinical care. For example, by linking with the network of NIHR Biomedical Research Centres, there is the potential to rapidly develop genomic biomarkers for early diagnosis and facilitate patient stratification for clinical trials. Ultimately, the initiative has the potential to leave a lasting legacy, building capacity in functional genomics in the UK and providing support for the next generation of researchers in this area.

Publications

10 25 50
 
Description Functional Genomics workgroup in the Psychiatric Genomics Consortium 
Organisation University of Cambridge
Country United Kingdom 
Sector Academic/University 
PI Contribution We are leading a sub-group on alternative splicing and epigenetics. This will establish an international collaborative research program.
Collaborator Contribution Providing data and analysis plans.
Impact We have established a new functional genomics working group within the PGC. I am on the management committee and leading a sub-group on alternative splicing.
Start Year 2023
 
Description Functional Genomics workgroup in the Psychiatric Genomics Consortium 
Organisation University of Edinburgh
Department Edinburgh Genomics
Country United Kingdom 
Sector Academic/University 
PI Contribution We are leading a sub-group on alternative splicing and epigenetics. This will establish an international collaborative research program.
Collaborator Contribution Providing data and analysis plans.
Impact We have established a new functional genomics working group within the PGC. I am on the management committee and leading a sub-group on alternative splicing.
Start Year 2023
 
Description Festival of Genomics & Biodata 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I gave a presentation at the Festival of Genomics at the Excel Centre providing an overview of my research and an introduction to the UK Functional Genomics Initiative.
Year(s) Of Engagement Activity 2024
URL https://festivalofgenomics.com/london/en/page/2025-homepage
 
Description South England Genetics and Epidemiology Group meeting 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact Gave an introduction to the UK Functional Genomics Initiative at the 2024 SEGEG meeting in Exeter, in addition to an overview of our isoform data. There was considerable interest in the FGx consortium with considerable follow-up interest.
Year(s) Of Engagement Activity 2024
URL https://www.exeter.ac.uk/events/details/index.php?event=14105
 
Description UK Functional Genomics Initiative website 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact We have launched a new website to describe activity within the uK Functional Genomics Initiative
Year(s) Of Engagement Activity 2025
URL http://www.ukfunctionalgenomics.com