Autonomous Ecological Surveying of the Abyss (AESA): Understanding Mesoscale Spatial Heterogeneity in the Deep Sea

Lead Research Organisation: National Oceanography Centre
Department Name: Science and Technology

Abstract

Determining the distribution and abundance of life is challenging, especially in the deep sea where high pressure and other logistical challenges limit data availability to a tiny fraction of what is available for other systems. Most of Earth's surface is nonetheless covered by water > 2000 m deep. Life in these abyssal regions directly influences the burial of carbon and nutrient cycling. Long-term research has now shown that even larger animals in the deep sea can vary in density by orders of magnitude, with concurrent changes in average body size, over periods as short as months. These variations are widely believed to be linked to climate-driven variation in the food supply to the deep sea. Similarly, biogeography studies have found that over distances approaching 100 km or more, the abundance of deep-sea life is related to surface productivity in the waters above. Thus the deep sea could be readily impacted by processes that alter surface ocean conditions like climate change, fishery activity, or ocean iron fertilisation. While there has been an increase in the understanding of how climate and surface processes affect deep-sea communities, the ability to understand these links further is thought to be limited by sampling error from undetected habitat heterogeneity (i.e. irregular or uneven habitat distributions). Features like hills, valleys, depressions, small rock outcrops, and biogenic mounds add to habitat complexity, but links between such features and the animals that live among them are very poorly resolved in abyssal plain habitats using current methods. We propose a new approach using the autonomous underwater vehicle (AUV) Autosub6000 to survey ecologically the Porcupine Abyssal Plain (PAP) Sustained Observatory to address a key question: Are spatial patterns in abyssal habitat features (like bathymetry, seafloor cover of phytodetrius [i.e. food availability], suspended solid concentration) related to spatial patterns in photographed life (density, dispersion, or biodiversity) at spatial scales from <1 m^2 to about 100 km^2? The effort is timely because we plan to supplement an existing Oceans2025 cruise to the PAP in 2011. We will use Autosub6000 to create a detailed bathymetric map of the study area. We will then use a camera system integrated with Autosub6000 to conduct photographic surveys over a 1 km^2 and 100 km^2 area, each with synchronous collection of oceanographic and environmental data. A series of sediment samples will also be collected to examine differences in sediment quality between higher and lower lying areas. A landscape (seascape) ecology database will then be assembled for hypothesis testing. We expect that seafloor features like deep-sea mounds, hills, and depressions will relate to non-random distributions of food availability and the photographed life. We expect that as the scale of features such as hills vary, so will the scale of patterns of some animals including fish. We expect that the results will help explain previous sampling error and allow for an order of magnitude improvement in the accuracy of abundance and distribution estimates, as well as the accuracy of ecosystem models that are based on those data. We will use respiration rates (i.e. food demand and carbon dioxide release) and sediment mixing indicators measured in Oceans2025 and other NOCS projects, and the abundance and size measures collected here to create maps of ecological function. This will show how factors such as hills, food supply, or community composition relate spatially to respiration and sediment mixing. That knowledge will provide important insight into how spatially pervasive temporal climate change impacts might be, a significant input for ecosystem and carbon budget modelling. Our effort will also have impacts on future national survey capability and the ability of researchers to convey information about deep-sea habitats to government, industry, students, and the public.

Publications

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Benoist NMA Landscape ecology in a recommended marine conservation zone in Biological Conservation

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Benoist NMA (2019) Monitoring mosaic biotopes in a marine conservation zone by autonomous underwater vehicle. in Conservation biology : the journal of the Society for Conservation Biology

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Dunlop K (2015) An evaluation of deep-sea benthic megafauna length measurements obtained with laser and stereo camera methods in Deep Sea Research Part I: Oceanographic Research Papers

 
Description The key objectives / outcomes of AESA were the following:
1. create high-resolution ecological maps at scales of <1 m2 to 100 km2.

To achieve the collection of this dataset we developed a new high-resolution digital camera system capable of creating overlapping images of the seafloor from both oblique and vertical orientations. This camera system was integrated into Autosub6000 and used at sea during D377 to achieve the data collection over the main AESA survey area, which was a hill on the Porcupine abyssal Plain (e.g. see Morris et al. 2014).

The collected images were then processed and annotated for various features such as particulate organic matter cover (food supply) and biodiversity and biomass (food demand) using a combination of machine and human annotation (see also papers by Durden et al. 2015, submitted; Morris et al. submitted. These data were quality controlled and a database on the identity, size, and location of all annotated objects was created. This is expected to go into the British Oceanographic Data Centre (BODC) within 2016. A habitat classification was also generated using acoustically mapped data and this was then also available for hypothesis testing and will similarly be uploaded to BODC.


2. test tractable hypotheses focusing on whether faunal distributions are linked with the spatial patterns of other fauna, habitat, food availability, and/or environmental conditions.

Each of the following basic null hypotheses was rejected. The variations of these hypotheses are explored, but there is ample scope for continued research into the detailed variations.
H01) Spatial patterns in habitat features (bathymetry, seafloor cover of phytodetrius [food availability], suspended solid concentration) do not significantly covary (p > 0.05) at spatial scales from <1 m2 to about 100 km2.
H02) Spatial patterns in abyssal benthic megafauna (density, dispersion, community composition and structure, or biodiversity) do not significantly covary (p > 0.05) at spatial scales from <1 m2 to about 100 km2.
H03) Spatial patterns in abyssal benthic megafauna exhibit no significant covariation (p > 0.05) with spatial patterns in habitat features at spatial scales from <1 m2 to about 100 km2.

The variation in POM and biomass were both found to be linked to depth and habitat/terrain class. These links imply both significant spatial patterns linked to the hill features, as well as distance and relations to other nearby terrain. Most deep-sea life relies on a particulate organic matter (POM) rain as a food supply, which sinks from productive surface waters. Yet, links between seafloor POM distribution and bathymetry such as abyssal hills, and their influence on seafloor ecology, have been difficult to resolve. By using an autonomous underwater vehicle to explore this abyssal terrain, and have found higher than expected seabed POM cover and biomass on hill features. This spatial variation in POM and biomass is likely driven by changes in bottom water current speeds produced by the hill terrain. With many millions of abyssal hill features known globally, the links between even modest terrain elevation and enhanced biomass indicates that our view of the distribution of life in the abyss is now much patchier than previously appreciated, similarly changing our view of ecology. The distribution of filter feeding fauna vs deposit feeding also shows selectivity where filter feeders are more dominant in areas of expected higher currents.


3. use the results to improve estimates of deep-sea biodiversity and ecosystem function of megafauna and relate the findings to factors such as food availability.

The apparent scale and magnitude of ecological heterogeneity introduced by abyssal hills and knolls seems globally important. Overall, our results suggest that changes in bathymetry, as small as a few tens of metres, drive lateral movement of POM at or above the seafloor and have a substantial impact on seafloor biomass. There is strong evidence that terrain modified currents and POM settling patterns controlled by local variations in seafloor bathymetry drive higher biomass on the hills in comparison to the open plain. This enhanced biomass is likely mirrored by increased ecological function and carbon cycle roles (e.g. carbon standing stock and total seafloor respiration). Abyssal hills and knolls may represent the most widespread landform on the planet, with an estimated 25 million intermediate or larger-scale bathymetric features present globally, and even higher numbers of small knolls suspected. The extent of hill and knoll influence on deep-sea ecology and carbon cycling is likely to be pervasive - understanding that heterogeneity may be vital to the biogeography, ecology and biogeochemistry of the world's seafloor.

In addition to benthic invertebrate megafauna we also examined the distribution of demersal fishes, and macrofauna such as polychaetes and meiofauna such as foraminifera. In a surprise outcome, the distribution of fishes did not appear to have any relation to the hill features. Macrofauna showed limited links in composition and foraminifera appear to have higher densities and differing morphology on hill features.

4. enhance UK capability in evaluating abyssal ecology and facilitate future time-series ecological research surveys, as well as surveys in frontier areas like the Arctic.

The expectations have clearly been met. Each major objective and hypothesis test has been achieved and we are working through reporting results with numerous papers published, in review, or in advanced development. The overall findings are even more interesting than expected. The finding that even changes in depth/terrain on the scale of knolls and small hills can drive three fold variation in biomass and related changes in community composition and biodiversity has truly profound implications for understanding the distribution of life.
Exploitation Route The findings are in the process of being reported in the peer-reviewed literature and filed with BODC. The camera and image processing capability developed as part of the AESA project has now been used in relation to numerous other research cruises (D378, JC077, DY008, DY021, DY030, DY034, JC120, JC125, JC124). The findings are also being combined with other efforts to understand the relationships between seafloor terrain and ecology including CODEMAP and HADES. These efforts are informing the development of new National Capability activities and modelling of seafloor biology. Moreover, the concept of bringing a time series component has already led to the advanced development of a new proposal concept "Porthole: Evolving biological carbon pump research through high-resolution imaging of the water column and seafloor over time".
Sectors Digital/Communication/Information Technologies (including Software),Education,Energy,Environment,Government, Democracy and Justice

 
Description The project has developed a new capability as well as scientific understanding that is applicable to numerous themes. The use of the capability on numerous cruises has included understanding of fisheries impact, marine protected area conservation, shelf sea biogeochemistry, carbon capture and storage, and seafloor mining impact. A few key activities to facilitate impact have included numerous presentations to scientific, policy and public venues. This included presentations at the 13th and 14th Deep-Sea Biology Symposiums, the University of Liverpool, the Welcome Collection, the 2014 ASLO Ocean Sciences meeting, the Challenger Society, and multiple GEO HAB conferences. We also created a web page and cruise blog (http://picturingthedeep.noc.ac.uk/) and industry and policy magazine articles (see below) and interactions with an art exhibition focused on the deep sea: • Jonathan, A, Autosub surveys deep ocean floor off Land's End, BBC News & Radio Devon, 2012. • Coley, K, Mapping the Abyss with AUV Photography, Marine Technology News, 2015. • Holmes, B, Secret ecosystem found on hills deep beneath the ocean's surface, New Scientist, 2015 • Preston, E, Weirdo Deep-Sea Anemone Kills a Giant Worm, Goes for a Walk, Discover Magazine, 2015. • Underwater Contractor magazine, Picturing the Deep, 2012. • Deep thinking: Investigating weather change from the bottom of the ocean up. Meteorology Technology International, 2012. • International Innovation, Picturing the Deep, 2014. • Lee, R, That Oceanic Feeling, John Hansard Gallery, Southampton, 2012. An important outcome has been the convening of the 2nd Marine Imaging Workshop at NOC, Southampton in 2014 (http://marine-imaging-workshop.com/). This workshop had about 100 attendees across various marine science applications and technology development. It covered many aspects of best practices in the acquisition and use of image data and the results have been collated by a subset of the attendees into a long form review article on the subject (Durden et al. 2016). Perhaps the most important impact has been the training of several PhD students and a PDRA (Kirsty Morris). These students have used AESA data/technology in their thesis work including: • Jennifer Durden (AESA tied studentship, U Southampton, graduated PhD) • Rosanna Milligan (fish distributions, U Glasgow, graduated PhD) • Claire Laguionie-Marchais (macrofauna distributions, U Southampton, graduated PhD) • Katleen Robert (habitat mapping, U Southapmton, graduated PhD) • Paris Stefanoudis (foraminifera, U Southampton, PhD candidate) • Matteo Ichino (influences of terrain on biomass, U Southampton, PhD candidate) • Noellie Benoist (body size controls on ecology, U Southampton, PhD student) • Erik Simon Llido (seafloor mining impact, U Southampton, PhD student)
First Year Of Impact 2012
Sector Education,Energy,Environment,Government, Democracy and Justice,Culture, Heritage, Museums and Collections
Impact Types Cultural,Societal,Policy & public services

 
Title High-throughput image processing for images collected by autonomous underwater vehicles 
Description This tool is described in Morris et al. (in press) Limnology and Oceanography: Methods. It is a Matlab-based routine which can process hundreds of thousands of images including, colour, non-uniform illumination, geo-referencing, mosaicking and tiling of images. 
Type Of Material Improvements to research infrastructure 
Year Produced 2012 
Provided To Others? Yes  
Impact This approach has now been used in research for carbon capture and storage (CCS), marine protected area assessment with Defra, the NERC shelf seas biogeochemistry programme and will soon be used in a study of seafloor mining impact. 
 
Description Computer vision and machine learning for oceanographic research 
Organisation University of Southampton
Country United Kingdom 
Sector Academic/University 
PI Contribution I am lead supervisor
Collaborator Contribution One PhD studentship linked to the NEXUSS centre for doctoral training
Impact No outcomes yet
Start Year 2016
 
Description NOC-Bielefeld Collaboration: Image Annotation 
Organisation Bielefeld University
Country Germany 
Sector Academic/University 
PI Contribution We are working with Prof. Dr.-Ing. Tim W. Nattkemper at Bielefeld University to adapt their automated image classification tools to our images collected during the Autonomous Ecological Surveying of the Abyss project.
Collaborator Contribution We have worked with the Bielefeld to supply training images for machine learning and work on analytics to compare machine learning vs. human annotation, as well as inter-human comparisons.
Impact Osterlo J, T Schoening, M Bergmann, JM Durden, HA Ruhl, TW Nattkemper. Ranking Color Correction Algorithms using Cluster Indices. ICPR workshop on Computer Vision for Analysis of Underwater Imagery (CVAUI), Stockholm, Sweden, 2014). Schoening, T, JM Durden, HA Ruhl and TW Nattkemper. Automating megafauna detection in the Porcupine Abyssal Plain. Marine Imaging Workshop, Southampton, 2014. Durden, JM, T Schoening, K Morris, TW Nattkemper and HA Ruhl. A comparison of expert image annotation for benthic ecology. Marine Imaging Workshop, Southampton, 2014.
Start Year 2013
 
Description Towards Biogeochemical and Ecological Research with Long Range AUVs 
Organisation Monterey Bay Aquarium Research Institute
Country United States 
Sector Academic/University 
PI Contribution Building on a long-term collaboration with MBARI, NOC is now taking the experiences from the Autonomous Ecological Surveying of the Abyss (AESA) project and working to streamline analytical workflow, reduce human intervention in AUV-based research, and exchange knowledge towards using AESA methods on a long-range/long-endurance AUV.
Collaborator Contribution Project team members Ruhl and McPhail travelled to MBARI and have maintained regular discussions about technology development, as well as scientific and methodological approaches.
Impact Dunlop, KM, LA Kuhnz, HA Ruhl, CL Huffard, DW Caress, RG Henthorn, BW Hobson, P McGill, and KL Smith, Jr. An evaluation of deep-sea benthic megafauna length measurements obtained with laser and stereo camera methods. Deep-Sea Research I. (in press).
Start Year 2009
 
Description Autonomous Ecological Surveying of the Abyss (AESA): Towards a landscape scale perspective in deep-sea ecology 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact University of Southampton Computationally Intensive Imaging (CII) Seminar Series. (Invited presentation), 2013
Year(s) Of Engagement Activity 2013
 
Description Autonomous Ecological Surveying of the Abyss at the Porcupine Abyssal Plain 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This was a talk given at the 2017 Marine Imaging Workshop
Year(s) Of Engagement Activity 2017
URL http://marine-imaging-workshop.com/
 
Description Autosub surveys deep ocean floor off Land's End 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact This was a BBC News article about our Autonomous Ecological Surveying of the Abyss research cruise.

This also led to a BBC Radio interview.
Year(s) Of Engagement Activity 2012
URL http://www.bbc.co.uk/news/science-environment-19080305
 
Description Computer vision and machine learning needs for research in biological oceanography 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Computer Vision for Analysis of Underwater Imagery (CVAUI 2016), International Conference on Pattern Recognition, Cancun, Mexico, 2016 (Invited Keynote presentation).
Year(s) Of Engagement Activity 2016
 
Description Deep thinking: Investigating weather change from the bottom of the ocean up - Meteorology Technology International 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact This was a magazine article, so it is difficult to judge the outcome.
Year(s) Of Engagement Activity 2012
 
Description Estimating the abundance, distribution, and diversity of deep seafloor life through surveying, macro-ecological analysis, and modelling 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact 15th Deep-Sea Biology Symposium. Monterey, California, USA, 2018
Year(s) Of Engagement Activity 2018
URL http://dsbs2018.org/
 
Description Evolving ocean biological carbon pump and seafloor ecology research using marine autonomy 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact AUV science and technology workshop, Atmosphere and Ocean Research Institute, University of Tokyo, 2016 (Invited Keynote presentation).
Year(s) Of Engagement Activity 2016
 
Description Glimpses of the landscapes and diversity of the deep ocean 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact On Light exhibition, Welcome Collection, London, UK, May 2015 (Invited presentation).
Year(s) Of Engagement Activity 2015
URL https://wellcomecollection.org/events/incredible-encounters-light
 
Description Picturing the Deep - Internatiaonal Innovation article 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact The article, which uses a Q&A format, is used as a project handout for various purposes.

Given that it as a non-citable article, it is difficult to judge impact.
Year(s) Of Engagement Activity 2013,2014
URL http://www.internationalinnovation.com/
 
Description Picturing the Deep - Underwater Contractor Magazine 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This was a magazine article, so it is difficult to judge impact.
Year(s) Of Engagement Activity 2012
 
Description Picturing the Deep - cruise website 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact This project website documented the research cruise activities and included a cruise blog.

The blog format used was later adopted for several other NERC research cruises.
Year(s) Of Engagement Activity 2012
URL http://picturingthedeep.noc.ac.uk/
 
Description Plastic Planet 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Public lecture on plastics in the ocean and deep sea.
Year(s) Of Engagement Activity 2012
URL http://noc.ac.uk/news/tonight-marine-life-talk-%E2%80%93-7-june-2012
 
Description Ranking Color Correction Algorithms using Cluster Indices 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Osterlo J, T Schoening, M Bergmann, JM Durden, HA Ruhl, TW Nattkemper. Ranking Color Correction Algorithms using Cluster Indices. ICPR workshop on Computer Vision for Analysis of Underwater Imagery (CVAUI), Stockholm, Sweden, 2014).

This was a talk to stimulate discussion about the pre-processing of images for automated annotation. This included our Bielefeld University collaborators.
Year(s) Of Engagement Activity 2014
 
Description Robot cameras monitor deep sea ecosystems 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Media release about AESA methods.
Year(s) Of Engagement Activity 2014
URL http://noc.ac.uk/news/robot-cameras-monitor-deep-sea-ecosystems
 
Description Semi-automated detection and measurement of phytodetrital cover from deep-sea images at the Porcupine Abyssal Plain 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact This was to inform UK researchers on a new aspect of our AESA methodology that includes reduced human intervention during biogeochemical analysis.

Morris, K, H Ruhl. Semi-automated detection and measurement of phytodetrital cover from deep-sea images at the Porcupine Abyssal Plain. Challenger Society Conference. Plymouth, UK, 2014.

This tool is being discussed for a new grant by another lab.
Year(s) Of Engagement Activity 2014
 
Description Single-celled shelled organisms shed light on ancient hills 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Press release for foraminifera study in relation to AESA.
Year(s) Of Engagement Activity 2016
URL http://noc.ac.uk/news/single-celled-shelled-organisms-shed-light-ancient-hills
 
Description Spatial heterogeneity in the activity of abyssal megafauna 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Durden JM, BJ Bett, and HA Ruhl. Spatial heterogeneity in the activity of abyssal megafauna. Marine Geological and Biological Habitat Mapping (GEOHAB) 2014 - Thirteenth International Symposium, Lorne, Australia, 2014.

This helped foster continued discussions following the 2014 Marine Imaging Workshop.
Year(s) Of Engagement Activity 2013
 
Description Spatial variation in the megabenthos at the Porcupine Abyssal Plain 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Durden J, H Ruhl, B Bett, and D Billett. Spatial variation in the megabenthos at the Porcupine Abyssal Plain. 13th International Deep-Sea Biology Symposium, Wellington, New Zealand, 2012.

This talk and related discussions ultimately led to the 2014 Marine Imaging Workshop held at NOC.
Year(s) Of Engagement Activity 2013
 
Description The role of Deep Sea Research in Planning for Environmental Change 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact School of Environmental Science, University of Liverpool. (Invited presentation), 2013.
Year(s) Of Engagement Activity 2013
 
Description The very hungry sea anemone 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Media release about time-lapse photographic study conducted as part of AESA.
Year(s) Of Engagement Activity 2015
URL http://noc.ac.uk/news/very-hungry-sea-anemone