The Genetic Basis of Family Effects and the Evolutionary Limits to Large Body-Size.

Lead Research Organisation: University of Edinburgh
Department Name: Sch of Biological Sciences

Abstract

In organisms with parental care, a major determinant of an individual's success are the parental decisions that determine how much resource that individual should receive. Blue tit parents vary widely in how much resource they are able to provide to their offspring. Some of this variation will have a genetic basis, but currently we do not know whether genes play a major or minor role. By forcing blue tits to raise offspring that are not their own we can ask if the foster-offspring of two related mothers (e.g. sisters) grow at more similar rates compared to the foster-offspring of unrelated mothers. We can use the degree of similarity to say how much of the variation in growth rate is due to the action of genes expressed in parents. We also don't know whether individuals that have genes that make them provide more resources to their offspring are more successful. Providing more resources to their offspring helps their offspring to survive and transmit their genes into future generations, and so it has often been thought that these individuals have successful genes. However, a parent that provides fewer resources may have a better chance of surviving to the following year and reproducing again, and so maybe it is these individuals that have more successful genes? By looking to see which individuals survive from year to year, and counting how many offspring they have, we will be able to say which of these two strategies is favoured by natural selection, or indeed if the best strategy is a compromise between the two.

The amount of resources an individual receives from its parents is not fixed. Individuals can manipulate their parents into providing more food (via behaviours such as begging) but we do not know whether individuals have genes that control how manipulative they are. However, by placing relatives (e.g. brothers) in different nests we can see whether their two sets of foster parents provide food at similar rates. If they did, this would imply that there are genes shared by the two brothers that are manipulating their foster parents. Genes that make the brothers very manipulative would be good for the brothers (it would increase the amount of food they receive) and bad for the parents (they would have to work harder). However, it is unclear whether these genes would have detrimental effects on the brothers' nest mates. If a brother forces the parent to bring more food, is this food shared by all members of the nest, or does the brother commandeer all of the food, leaving less for its nest mates? If the former, manipulative genes would be beneficial for an individuals nest mates, but if the latter, manipulative genes would be detrimental to an individuals nest mates. We can distinguish between these two hypotheses by comparing the nest mates of manipulative brothers, and nest mates of non-manipulative brothers. If the nest mates of manipulative brothers are on average lighter than the nest mates of non-manipulative brothers we know that the genes for manipulation are bad for nest-mates.

The answers to these questions may help us to address a long-standing problem: large individuals tend to survive better and have more offspring than small individuals, and because size is heritable we would therefore expect most species to be evolving to be larger over time. This is not what we see. However, if the genes that make an individual large are also bad for parents (because they have had to work harder) or bad for siblings (because they are deprived of food) then perhaps large size will not evolve. This is because identical copies of the genes that make an individual large are also present in that individual's parents and siblings. A gene that makes an individual large directly benefits itself, but a gene that makes an individual small indirectly helps copies of its self in the individual's relatives. In this way genes for large size and small size may do equally well, and then we would not expect large size to evolve.

Planned Impact

We anticipate that this project will have academic, industrial and societal impacts.

Academic Impact

i. Enhancing knowledge economy: Our work will provide new insights into the genetic basis and selective consequences of family interactions. Our results will be published in high impact journals and presented at national and international conferences. Our data will benefit future projects and will be made available via on-line repositories (Center for Open Science).

ii. Developing and training highly skilled researchers: The project will train ca. 10 people in the collection of standardised ecological data, three in molecular genetic methods and one in advanced statistical methodology.

iii. Developing and supporting new statistical methods: JDH has previously developed general purpose software tools (such as MCMCglmm) that are widely used across many academic disciplines. The work outlined in this proposal will add new features to MCMCglmm and it is envisaged that these will also be used widely, both by evolutionary biologists but also more widely across the data-driven sciences.

Societal impacts

i. Contributing to increasing public awareness and understanding of science: The number of UK citizens interested in natural history, and birds specifically, provides good reason to expect that the project and its findings will be of interest to the general public. We will establish a project blog and twitter account to interact with what we hope will be a highly engaged audience. We will encourage local public engagement through talks to local societies and an exhibit at the Edinburgh Science Festival. More generally, we will organise a wikithon for the large number of quantitative geneticists working in Edinburgh in order to improve the Wikipedia entries on quantitative genetics and its concepts. Wikipedia is one of the main routes by which the public can learn about scientific concepts, and providing non-techincal understandable information in this medium is central to improving public awareness and understanding of science.

Industrial impacts

i. Recently, animal and plant breeders have become interested in incorporating indirect genetic effects into their breeding strategies in order to increase food quality, production and animal welfare. JDH is a member of the Edinburgh Alliance for Complex Trait Genetics (e-ACTG), which includes members from outside of academia working on selective breeding in agriculturally important animals.The biannual e-ACTG meetings will give us a forum to reach a more diverse audience than is typical for specialized scientific meetings, and communicate our results to interested parties working in industry,

ii. As detailed under Academic Impact iii., this proposal will add functionality to MCMCglmm, a piece of software written and maintained by JDH and already used for industrial applications (JDH receives many emails a week asking for assistance, some of which are from employees in the private sector). The new functionality will have wide application in many statistical problems, and it is envisaged that this new functionality will be of benefit to all users, including those in the private sector.
 
Description The grant had four aims;

1/ To experimentally increase parental care in order to look at the fitness costs.

We conducted a 2-year experiment where we used playback of chick begging calls in order to increase the amount of parental care parents provide. Unfortunately, it seems like the playback did not elicit a response in the parents, despite previous small-scale experiments suggesting that it should have been successful. Over the following 2 years (2019 and 2020) we tried a different experimental approach in order to experimentally test for selection on parental care. We have forced some parents to work 3 days longer and others 3 days shorter by cross-fostering chicks of different ages between nests. The mass of chicks in the manipulated broods is comparable to that in non-manipulated broods suggesting the experiment has induced different levels of parental investment. The final data (parental survival to 2021) is collected and will be analysed shortly.

2/ To decompose phenotypic skew into its genetic and environmental components.

We find that the long tail of small individuals exists because of the environmental reasons, not genetic reasons. This causes a non-linear parent-offspring relationship meaning that small individuals do not transmit their diminutive stature to their offspring. This work i snow published.

3/ To estimate the amount of variation in chick mass that can attributed to genes expressed in parents.

Due to sample size constraints we envisaged doing this in the final year of the grant. Due to difficulties with COVID and this has been delayed and we hope to do it in the not too distant future.

4/ To process long-term video footage in order to measure parental feeding rates, and test whether feeding rates depend on the genotypes of the offspring.

Unfortunately the computer scientist we were collaborating with in order to develop machine learning techniques for processing video has been snapped up by the tech industry. We are currently looking at plausible alternatives.
Exploitation Route We hope that the research, once completed and written up, will motive other scientists to tackle similar questions.
Sectors Agriculture, Food and Drink,Environment

 
Title Blue Tit Data 
Description All data collected on the Dalmeny Blue Tit population 
Type Of Material Database/Collection of data 
Year Produced 2019 
Provided To Others? Yes  
Impact The data is open access and actively maintained. 
URL https://osf.io/n3jgy/
 
Title Data and Models (version 1) 
Description This archive contains the following: a) Phage Susceptibility - a folder containing the scripts and data for MCMCglmms investigating the role of host phylogeny in the susceptibility of Staphylococcus to a bacteriophage, ISP. b) Leave One Out Cross Validation - a folder containing the scripts and data for MCMCglmm leave-one-out cross-validation where the ability of the model to predict the susceptibility of an unknown host based on the susceptibility of its neighbours and their phylogenetic relatedness is tested. The complete phylogeny for the 64 Staphylococcus strains can be found in either folder and is called: Staph_Phylogeny.nwk 
Type Of Material Database/Collection of data 
Year Produced 2022 
Provided To Others? Yes  
URL https://figshare.com/articles/dataset/Data_and_Models_version_1_/21642209
 
Title Data from: No evidence for sibling or parent-offspring coadaptation in a wild population of blue tits, despite high power. 
Description  
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
 
Title MCMCglmm 
Description The software fits a range of statistical models used commonly across the sciences. Additional capabilities have been added to support models required for this grant. 
Type Of Technology Software 
Year Produced 2019 
Open Source License? Yes  
Impact The software has been cited nearly 700 times (Google Scholar) since its release in 2010. 
URL http://cran.r-project.org/web/packages/MCMCglmm/index.html