Does developmental plasticity influence speciation?
Lead Research Organisation:
UNIVERSITY COLLEGE LONDON
Department Name: Earth Sciences
Abstract
Life is a journey. As we grow older, we change. Sometimes we respond in the spur of the moment. Occasionally, an event has long-lasting consequences in spite of any change in circumstance and shapes our outlook far into the future.
This future flexibility, or a lack thereof, also applies to the traits like size and weight that influence our daily risk of death and our reproductive success. Some of these traits retain flexibility throughout life, whereas others can only change in a fixed early window. As humans, we are far more likely to shift weight gain trajectories before six months of age than when older.
Any ability to flexibly adjust traits can boost survival chances in new or changing environments, but also provides the means to innovate and so express new combinations of traits. Flexibility as a means of innovation might promote the divergence of ancestral organisms into new species, but also might not because such flexibility would mean that species can already deal with whatever circumstances they encounter, which would in turn remove the pressure for any innovation to become hardwired into their DNA.
The long timescales over which this hardwiring plays out complicates collection of data. We don't know whether future flexibility or a lack of it is more likely to catalyse change into new species. In this project, we will contribute this increasingly requested data and therefore provide the first evidence if a lifetime of flexibility, or a stubborn refusal to change, influences the emergence of new species.
Planktonic foraminifera are single-celled organisms that live in vast numbers in all the world's oceans. While chemical analysis of their fossil remains has generated a remarkably continuous record of past climate change, each individual also retains a complete record of its size and shape at each stage along its journey through life.
These growth stages can be revealed by state-of-the-art imaging technology, which has sparked a digital revolution in how biologists study life on Earth. To study evolution, we need to study differences among lots of individuals. We need to know how and why these differences change through time. This need to measure lots of individuals means that the current practise of a person pointing and clicking on a computer screen to identify distinct parts is too slow. Computer programmes that provide a faster, more repeatable and less biased way of identifying and analysing such parts are now available, completing the toolkit needed to build big databases.
By bringing together lessons from diverse scientific disciplines, we propose to use the same fossil specimens to collate records of an individual's journey through life and the environment it experienced every step of the way, both of which were changing from day-to-day, millions of years ago.
While the fossil record of planktonic foraminifera provides the necessary timespan and abundance, new computer programmes and imaging technology complete the toolkit jigsaw to investigate for the first time if certain parts of an individual's journey through life are more influential than others in determining the eventual evolutionary destinations of its species.
Our unique, direct link between organism and environment lets us study the dynamic journey through life in the static death of the fossil record. The fundamental limitation to the current ways we study how new species emerge is the lack of repeated samples through time to follow the genesis of novel lifeforms, and explicitly targeting this limitation using state-of-the-art approaches from multiple scientific disciplines means we will deliver a breakthrough in attempts to answer one of the most fundamental of all biological questions: how do differences among individuals make differences among species?
This future flexibility, or a lack thereof, also applies to the traits like size and weight that influence our daily risk of death and our reproductive success. Some of these traits retain flexibility throughout life, whereas others can only change in a fixed early window. As humans, we are far more likely to shift weight gain trajectories before six months of age than when older.
Any ability to flexibly adjust traits can boost survival chances in new or changing environments, but also provides the means to innovate and so express new combinations of traits. Flexibility as a means of innovation might promote the divergence of ancestral organisms into new species, but also might not because such flexibility would mean that species can already deal with whatever circumstances they encounter, which would in turn remove the pressure for any innovation to become hardwired into their DNA.
The long timescales over which this hardwiring plays out complicates collection of data. We don't know whether future flexibility or a lack of it is more likely to catalyse change into new species. In this project, we will contribute this increasingly requested data and therefore provide the first evidence if a lifetime of flexibility, or a stubborn refusal to change, influences the emergence of new species.
Planktonic foraminifera are single-celled organisms that live in vast numbers in all the world's oceans. While chemical analysis of their fossil remains has generated a remarkably continuous record of past climate change, each individual also retains a complete record of its size and shape at each stage along its journey through life.
These growth stages can be revealed by state-of-the-art imaging technology, which has sparked a digital revolution in how biologists study life on Earth. To study evolution, we need to study differences among lots of individuals. We need to know how and why these differences change through time. This need to measure lots of individuals means that the current practise of a person pointing and clicking on a computer screen to identify distinct parts is too slow. Computer programmes that provide a faster, more repeatable and less biased way of identifying and analysing such parts are now available, completing the toolkit needed to build big databases.
By bringing together lessons from diverse scientific disciplines, we propose to use the same fossil specimens to collate records of an individual's journey through life and the environment it experienced every step of the way, both of which were changing from day-to-day, millions of years ago.
While the fossil record of planktonic foraminifera provides the necessary timespan and abundance, new computer programmes and imaging technology complete the toolkit jigsaw to investigate for the first time if certain parts of an individual's journey through life are more influential than others in determining the eventual evolutionary destinations of its species.
Our unique, direct link between organism and environment lets us study the dynamic journey through life in the static death of the fossil record. The fundamental limitation to the current ways we study how new species emerge is the lack of repeated samples through time to follow the genesis of novel lifeforms, and explicitly targeting this limitation using state-of-the-art approaches from multiple scientific disciplines means we will deliver a breakthrough in attempts to answer one of the most fundamental of all biological questions: how do differences among individuals make differences among species?
Planned Impact
PISTON takes an unprecedented transdisciplinary approach to investigate how new species form. Species are the foundation of biodiversity. The House of Lords Systematics & Taxonomy review identified biodiversity's critical underpinning of an extensive array of natural environment research ranging from blue skies evolutionary questions, particularly into charismatic "missing links" that reveal how differences among individuals generate differences among species, to applied questions such as ecosystem service provision (i.e., the benefits we derive from natural ecosystems) and global health threat mitigation.
PISTON has been designed as a set of interrelated work packages that will integrate to more than the sum of their individual parts to impact policy, public health, industry and the general public. PISTON investigators are active in all these sectors and will build on and further develop existing relationships and activities.
Members of PISTON have a strong track record of contributing to Intergovernmental Panel on Climate Change (IPCC) reports. Our unprecedented data, focusing on the pivotal link between organism and environment and from the last interval when the world was 2-3 degrees warmer than it is today, can contribute to future IPCC reports in this area. Foster (Contributing Author) and Schmidt (Chapter Lead Author; Co-author of Summary for Policymakers) will co-ordinate impact in this area.
Proprietary versions of WP1 computer vision algorithms have successfully delineated the ball and socket of hip joints as a diagnostic to improve hip replacement therapy, which indicates their potential for wider healthcare benefits for the general public. The PISTON team has considerable experience working with industry (Sinclair with Nikon to develop bespoke biological and medical tools) and the public sector (Nixon on, e.g., automated gait recognition) and will draw on this experience to ensure the open-source PISTON outputs are carefully described, annotated and made accessible in toolbox form to the broadest possible community of end-users.
Taxonomic revisions through refined dating and age control will directly impact foraminiferal specialists in commercial operations, particularly the oil industry. The statistical approaches we propose minimise subjective choices, which adds repeatability and transparency across end-users. We will build on existing networks: Wade (NE/N017900) and Wilson (PI: NE/K007211 and NE/K014137) name PetroStrat, Network Stratigraphic, Shell, RPS Energy and Neftex-Halliburton as Industrial Partners on current awards. Wade will act as Industry Impact Champion (1.5% costed time) to incorporate PISTON data and curate the Mikrotax illustrated online portal. In addition to working with External Advisory Board member Haydon Bailey (Network Stratigraphic) to deliver Industrial impact, we will invite further industrial partners to the second scientific scoping workshop in Year 3 (£2500 budgeted for one UK and one international).
All Research Staff will participate in Public Engagement activities during PISTON in areas of particular appeal to each individual. In particular, we will work with Ellen Dowell, a Science Communicator, interdisciplinary facilitator and current collaborator of PI Ezard (NE/J018163), to run interactive workshops in Einstein's Garden at the Green Man Festival in Year 3 (led by Aze), which we will then run subsequently at exhibitions through applications to the NERC Science Festival, Royal Society Summer School and local science festivals in our regions. These hands-on workshops will let festival-goers see evolution in action and contribute to an animated "flick book" style-film based on the divergence into new species (£3000 budgeted). This film will ensure legacy and impact beyond the festival fence.
PISTON has been designed as a set of interrelated work packages that will integrate to more than the sum of their individual parts to impact policy, public health, industry and the general public. PISTON investigators are active in all these sectors and will build on and further develop existing relationships and activities.
Members of PISTON have a strong track record of contributing to Intergovernmental Panel on Climate Change (IPCC) reports. Our unprecedented data, focusing on the pivotal link between organism and environment and from the last interval when the world was 2-3 degrees warmer than it is today, can contribute to future IPCC reports in this area. Foster (Contributing Author) and Schmidt (Chapter Lead Author; Co-author of Summary for Policymakers) will co-ordinate impact in this area.
Proprietary versions of WP1 computer vision algorithms have successfully delineated the ball and socket of hip joints as a diagnostic to improve hip replacement therapy, which indicates their potential for wider healthcare benefits for the general public. The PISTON team has considerable experience working with industry (Sinclair with Nikon to develop bespoke biological and medical tools) and the public sector (Nixon on, e.g., automated gait recognition) and will draw on this experience to ensure the open-source PISTON outputs are carefully described, annotated and made accessible in toolbox form to the broadest possible community of end-users.
Taxonomic revisions through refined dating and age control will directly impact foraminiferal specialists in commercial operations, particularly the oil industry. The statistical approaches we propose minimise subjective choices, which adds repeatability and transparency across end-users. We will build on existing networks: Wade (NE/N017900) and Wilson (PI: NE/K007211 and NE/K014137) name PetroStrat, Network Stratigraphic, Shell, RPS Energy and Neftex-Halliburton as Industrial Partners on current awards. Wade will act as Industry Impact Champion (1.5% costed time) to incorporate PISTON data and curate the Mikrotax illustrated online portal. In addition to working with External Advisory Board member Haydon Bailey (Network Stratigraphic) to deliver Industrial impact, we will invite further industrial partners to the second scientific scoping workshop in Year 3 (£2500 budgeted for one UK and one international).
All Research Staff will participate in Public Engagement activities during PISTON in areas of particular appeal to each individual. In particular, we will work with Ellen Dowell, a Science Communicator, interdisciplinary facilitator and current collaborator of PI Ezard (NE/J018163), to run interactive workshops in Einstein's Garden at the Green Man Festival in Year 3 (led by Aze), which we will then run subsequently at exhibitions through applications to the NERC Science Festival, Royal Society Summer School and local science festivals in our regions. These hands-on workshops will let festival-goers see evolution in action and contribute to an animated "flick book" style-film based on the divergence into new species (£3000 budgeted). This film will ensure legacy and impact beyond the festival fence.
Publications
Boscolo-Galazzo F
(2021)
Late Neogene evolution of modern deep-dwelling plankton
Boscolo-Galazzo F
(2022)
Late Neogene evolution of modern deep-dwelling plankton
in Biogeosciences
Durrant J
(2017)
Seam-hiding for Looping Videos
Fabbrini A
(2024)
Rediscovering Globigerina bollii Cita and Premoli Silva 1960
in Journal of Micropalaeontology
Fabbrini A
(2021)
Systematic taxonomy of middle Miocene Sphaeroidinellopsis (planktonic foraminifera)
in Journal of Systematic Palaeontology
Fabbrini A
(2023)
Bridging the extant and fossil record of planktonic foraminifera: implications for the Globigerina lineage
in Palaeontology
Fairbrass A
(2018)
CityNet-Deep learning tools for urban ecoacoustic assessment
in Methods in Ecology and Evolution
Fayolle F
(2021)
The evolution of Eocene planktonic foraminifera Dentoglobigerina
in Journal of Systematic Palaeontology
Firman M
(2018)
DiverseNet: When One Right Answer is not Enough
| Description | We have discovered and constrained the timing of evolutionary and extinction events in marine plankton, and shown that some events are synchronous, whilst others are diachronous. We have also examined how changes in morphology (shape) occur across evolutionary events. We have linked the fossil record to the modern plankton and named a new species. |
| Exploitation Route | Our discoveries will be used by multiple researchers interested in evolutionary processes. |
| Sectors | Environment |
| Title | Data from: Bridging the extant and fossil record of planktonic foraminifera: implications for the Globigerina lineage |
| Description | Dataset for the biometric study on picked specimens of the planktonic foraminifer Globigerina falconensis. The individuals span the biozones M4 to PT1 from various locations worldwide. All specimens come from cored drill samples from IODP Site U1482, ODP Site 590, Meteor M32. Extra 33 samples are from a geological outcrop located in Siena Basin (Italy). All these data have been used for the paper entitled: Bridging the extant and fossil record of planktonic foraminifera: implications for the Globigerina lineage. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2023 |
| Provided To Others? | Yes |
| URL | https://datadryad.org/stash/dataset/doi:10.5061/dryad.fbg79cp0r |
| Title | Size and shape data of Globigerinoidesella fistulosa, Trilobatus sacculifer and intermediate specimens from ODP Site 1115 |
| Description | Planktonic foraminifera are extremely well-suited to study evolutionary processes in the fossil record due to their high-resolution deposits and global distribution. Species are typically conservative in their shell morphology with the same geometric shapes appearing repeatedly through iterative evolution, but the mechanisms behind the architectural limits on foraminiferal shell shape are still not well understood. To understand when and how these developmental constraints can be overcome, we study morphological change leading up to the origination of the unusually ornate species Globigerinoidesella fistulosa. Our results show that the origination of G. fistulosa from the Trilobatus sacculifer plexus involved an amalgamation of three different heterochronic expressions: addition of chambers (hypermorphosis), earlier onset of protuberances (pre-displacement), and steeper allometric slope (acceleration) as compared to its ancestor. We argue that the protuberances unique to G. fistulosa were necessary to sustain a surface-area: volume ratio that could host sufficient numbers of photosymbionts. Our work provides a case study of the complex combination of processes required to produce unusual shell shapes and highlights the importance of developmental processes in evolutionary origination. |
| Type Of Material | Database/Collection of data |
| Year Produced | 2023 |
| Provided To Others? | Yes |
| URL | https://datadryad.org/stash/dataset/doi:10.5061/dryad.3bk3j9kqh |
| Description | MARUM-Bremen |
| Organisation | University of Bremen |
| Department | MARUM |
| Country | Germany |
| Sector | Academic/University |
| PI Contribution | Dr Fabbrini analysed the samples provided by the MARUM Centre and involved the collaborating partner in the research project developed by Prof. Wade. |
| Collaborator Contribution | Prof. Kucera provided samples for micropalaeontological analysis and taxonomic support. Dr Greco provided help in genetic data collection and extraction. These contribution will culminate in the writing of a scientific paper. |
| Impact | Interdisciplinary collaboration between genetic biology and micropaleontology on modern lineages of planktonic foraminifera. |
| Start Year | 2020 |
| Description | Smithsonian Institution |
| Organisation | Smithsonian Institution |
| Country | United States |
| Sector | Public |
| PI Contribution | Dr Fabbrini edited digital images provided by Dr Huber now hosted in the online archive of the institution. |
| Collaborator Contribution | Dr Huber provided access to paratypes and holotypes hosted in the Smithsonian Instituiton. |
| Impact | Images edited and displayed on the Smithsonian website. The collaboration will eventually lead to the writing of a scientific paper on planktonic foraminifera evolution. |
| Start Year | 2019 |
| Description | University of Milan |
| Organisation | University of Milan |
| Country | Italy |
| Sector | Academic/University |
| PI Contribution | Dr. Fabbrini and Prof. Wade analysed the samples provided by Prof. Petrizzo (Univ. of Milano) and Prof. Premoli Silva. |
| Collaborator Contribution | Prof. Petrizzo provided access to rare specimens archived in her institution and further samples from northen Italy for micropaleontological studies. |
| Impact | The collaboration will lead to eventually to the publication of a scientific article. |
| Start Year | 2019 |
| Description | British Science Week Cafe Scientifique event |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Public/other audiences |
| Results and Impact | I gave a talk on microfossils at the Reading Branch of the British Science Association as part of the British Science Week Cafe Scientifique event. Questions were asked by members of the audience, which were all general public. |
| Year(s) Of Engagement Activity | 2019 |
| URL | https://sciencelive.net/event/644/ |
| Description | UCL Technical Staff Showcase 2023 |
| Form Of Engagement Activity | Participation in an open day or visit at my research institution |
| Part Of Official Scheme? | No |
| Geographic Reach | Local |
| Primary Audience | Undergraduate students |
| Results and Impact | A stand was set up to show the collaboration between the Department of Earth Sciences and the Department of Chemical Engineering. The stand presented a collection of 3d printed microfossils and their virtual 3d models. This showcase highlighted the potential of x-rays micro-computed tomography for the study of foraminifera and their evolution. |
| Year(s) Of Engagement Activity | 2023 |
