CAMPUS (Combining Autonomous observations and Models for Predicting and Understanding Shelf seas)
Lead Research Organisation:
Plymouth Marine Laboratory
Department Name: Plymouth Marine Lab
Abstract
Shelf seas are of major societal importance providing a diverse range of goods (e.g. fisheries, renewable energy, transport) and services (e.g. carbon and nutrient cycling and biodiversity). Managing UK seas to maintain clean, healthy, safe, productive and biologically diverse oceans and seas is a key governmental objective, as evidenced by the obligations to obtain Good Environmental Status (GES) under the UK Marine Strategy Framework, the Convention on Biological Diversity and ratification of the Oslo-Paris Convention (OSPAR) .. The delivery of these obligations requires comprehensive information about the state of our seas which in turn requires a combination of numerical models and observational programs.
Computer modelling of marine ecosystems allows us to explore the recent past and predict future states of physical, chemical and biological properties of the sea, and how they vary in 3D space and time. In an analogous manner to the weather forecast, the Met Office runs a marine operational forecast system providing both short term forecast and multi-decadal historical data products. The quality of these forecasts is improved by using data assimilation; the process of predicting the most accurate ocean state using observations to nudge model simulations, producing a combined observation and model product.
Marine autonomous vehicles (MAVs) are a rapidly maturing technology and are now routinely deployed both in support of research and as a component of an ocean observing system. When used in conjunction with fixed point observatories, ships of opportunity and satellite remote sensing, the strategic deployment of MAVs offers the prospect of substantial improvement in our observing network. Marine Gliders in particular have the capability to provide depth resolved data sets of high resolution from deployments that can endure several months and cover 100s kms, allowing the collection of sufficient information to be useful for assimilation into models.
We will improve the exchange of data between model systems and observational networks to inform an improved strategy for the deployment of the UK's high-cost marine observing capability. In particular we will utilise mathematical and statistical models to develop and test "smart" autonomy - autonomous systems that are enabled to selectively search and monitor explicit features within the marine system. By developing data assimilation techniques to utilise autonomous data, our model systems will be able to better characterise episodic events such as the spring bloom, harmful algal blooms and oxygen depletion, which are currently not well captured and are key to understanding ecosystem variability and therefore quantifying GES.
In doing so CAMPUS will provide a step change in the combined use of observation and modelling technologies, delivered through a combination of autonomous technologies (gliders), other observations and shelf-wide numerical models. This will provide improved analysis of key ocean variables, better predictions of episodic events, and 'smart' observing systems in order to improve the evidence base for compliance with European directives and support the UK industrial strategy.
Computer modelling of marine ecosystems allows us to explore the recent past and predict future states of physical, chemical and biological properties of the sea, and how they vary in 3D space and time. In an analogous manner to the weather forecast, the Met Office runs a marine operational forecast system providing both short term forecast and multi-decadal historical data products. The quality of these forecasts is improved by using data assimilation; the process of predicting the most accurate ocean state using observations to nudge model simulations, producing a combined observation and model product.
Marine autonomous vehicles (MAVs) are a rapidly maturing technology and are now routinely deployed both in support of research and as a component of an ocean observing system. When used in conjunction with fixed point observatories, ships of opportunity and satellite remote sensing, the strategic deployment of MAVs offers the prospect of substantial improvement in our observing network. Marine Gliders in particular have the capability to provide depth resolved data sets of high resolution from deployments that can endure several months and cover 100s kms, allowing the collection of sufficient information to be useful for assimilation into models.
We will improve the exchange of data between model systems and observational networks to inform an improved strategy for the deployment of the UK's high-cost marine observing capability. In particular we will utilise mathematical and statistical models to develop and test "smart" autonomy - autonomous systems that are enabled to selectively search and monitor explicit features within the marine system. By developing data assimilation techniques to utilise autonomous data, our model systems will be able to better characterise episodic events such as the spring bloom, harmful algal blooms and oxygen depletion, which are currently not well captured and are key to understanding ecosystem variability and therefore quantifying GES.
In doing so CAMPUS will provide a step change in the combined use of observation and modelling technologies, delivered through a combination of autonomous technologies (gliders), other observations and shelf-wide numerical models. This will provide improved analysis of key ocean variables, better predictions of episodic events, and 'smart' observing systems in order to improve the evidence base for compliance with European directives and support the UK industrial strategy.
Planned Impact
This project will be of interest and benefit to a wide community, ranging from policy makers to end users of operational forecasts, and industry, underpinning the development of strategies to achieve a healthy marine environment, rendering ecosystems more resilient to climate change and variability, and assisting sustainable exploitation of marine resources.
Policy and Marine Management: Defra, Marine Scotland and Agri-Food and Biosciences Institute AFBI are responsible for implementation of the Marine Strategy Framework Directive in the UK and the establishment of clear environmental targets and monitoring programmes. They will benefit from improved knowledge and predictive skill for key indicators of the state of the marine environment. We will inform the assessment of Good Environmental Status, through demonstrating that data assimilated model products can provide a complete and contiguous information resource. This work will also inform the OSPAR assessment and future advances in the indicators used. Other policy areas that will benefit are marine spatial planning, fisheries policy and environmental assessment for off-shore operations. We will also engage with relevant international actors, e.g. International Council for the Exploration of the Sea; and non-governmental organisations (e.g. WWF), who develop science and advice to support the sustainable use of the oceans. CAMPUS will seek to engage with policy makers, via briefing notes, POSTnotes, or via the Parliamentary & Scientific Committee.
Marine Monitoring strategies: Optimising the use of the UK's high-cost marine observing capability requires integrated network design and cost benefit analysis: CAMPUS will provide understanding of the scales and variability of the shelf sea system in the context of GES indicators and thus advise on the optimal observation network design for monitoring. This will assist the UK Integrated Marine Observing Network (UK-IMON); UK Marine Monitoring and Assessment Strategy (UKMMAS); the UK Marine Science Co-ordination Committee (MSCC). Key stakeholders include Defra, Marine Scotland, UKMO and AFBI.
Operational Ocean forecast: The Copernicus Marine Environment Monitoring Service (CMEMS) provides regular and systematic reference and monitoring information on the state of the oceans and regional seas, for both policy applications, such as MSFD, businesses and marine operators to exploit commercially. CAMPUS will integrate improved model-data systems into existing CMEMS operational oceanographic simulation and data delivery systems, further providing a template as to how this might be effected in other regions. Key stakeholders include MERCATOR and the UKMO
Industry: Dynamic sampling and truly autonomous vehicles open up the potential for a) new technology developments in the AV industry b) wider applications for monitoring in the energy / offshore industry and c) risk assessment for the aquaculture industry. Key stakeholders include DSTL, the MASSMO consortium and the Scottish aquaculture industry.
Data delivery: A key challenge for encouraging the use of model data products is the ability to make them easily accessible to the full range of stakeholders (e.g. policy, NGO, business, academics, general public). Model and data products will be made accessible via working with BODC, the Marine Environmental Data and Information Network (MEDIN) and international data infrastructures provided by ICES and EMODnet. A public facing web-based GIS data portal will allow users to browse and map data.
Overseas Development Assistance: CAMPUS will provide a template for closely aligning models and observations in the ODA context, for example using models to aid the design of monitoring effort and inform model system configuration. We will explore how this would work in practice in a short desk study, focusing on Living Marine resources in the Bay of Bengal. This project will contribute in particular to UN Sustainable Development Goals (UNSDG14)
Policy and Marine Management: Defra, Marine Scotland and Agri-Food and Biosciences Institute AFBI are responsible for implementation of the Marine Strategy Framework Directive in the UK and the establishment of clear environmental targets and monitoring programmes. They will benefit from improved knowledge and predictive skill for key indicators of the state of the marine environment. We will inform the assessment of Good Environmental Status, through demonstrating that data assimilated model products can provide a complete and contiguous information resource. This work will also inform the OSPAR assessment and future advances in the indicators used. Other policy areas that will benefit are marine spatial planning, fisheries policy and environmental assessment for off-shore operations. We will also engage with relevant international actors, e.g. International Council for the Exploration of the Sea; and non-governmental organisations (e.g. WWF), who develop science and advice to support the sustainable use of the oceans. CAMPUS will seek to engage with policy makers, via briefing notes, POSTnotes, or via the Parliamentary & Scientific Committee.
Marine Monitoring strategies: Optimising the use of the UK's high-cost marine observing capability requires integrated network design and cost benefit analysis: CAMPUS will provide understanding of the scales and variability of the shelf sea system in the context of GES indicators and thus advise on the optimal observation network design for monitoring. This will assist the UK Integrated Marine Observing Network (UK-IMON); UK Marine Monitoring and Assessment Strategy (UKMMAS); the UK Marine Science Co-ordination Committee (MSCC). Key stakeholders include Defra, Marine Scotland, UKMO and AFBI.
Operational Ocean forecast: The Copernicus Marine Environment Monitoring Service (CMEMS) provides regular and systematic reference and monitoring information on the state of the oceans and regional seas, for both policy applications, such as MSFD, businesses and marine operators to exploit commercially. CAMPUS will integrate improved model-data systems into existing CMEMS operational oceanographic simulation and data delivery systems, further providing a template as to how this might be effected in other regions. Key stakeholders include MERCATOR and the UKMO
Industry: Dynamic sampling and truly autonomous vehicles open up the potential for a) new technology developments in the AV industry b) wider applications for monitoring in the energy / offshore industry and c) risk assessment for the aquaculture industry. Key stakeholders include DSTL, the MASSMO consortium and the Scottish aquaculture industry.
Data delivery: A key challenge for encouraging the use of model data products is the ability to make them easily accessible to the full range of stakeholders (e.g. policy, NGO, business, academics, general public). Model and data products will be made accessible via working with BODC, the Marine Environmental Data and Information Network (MEDIN) and international data infrastructures provided by ICES and EMODnet. A public facing web-based GIS data portal will allow users to browse and map data.
Overseas Development Assistance: CAMPUS will provide a template for closely aligning models and observations in the ODA context, for example using models to aid the design of monitoring effort and inform model system configuration. We will explore how this would work in practice in a short desk study, focusing on Living Marine resources in the Bay of Bengal. This project will contribute in particular to UN Sustainable Development Goals (UNSDG14)
Organisations
- Plymouth Marine Laboratory (Lead Research Organisation)
- Meteorological Office UK (Collaboration)
- Mercator Océan (Collaboration)
- National Partnership for Ocean Prediction (NPOP) (Collaboration)
- UNIVERSITY OF READING (Collaboration)
- Dalhousie University (Collaboration)
- Data Assimilation Task Team (DA-TT) (Collaboration)
- Marine Ecosystem And Prediction Task Team (MEAP-TT) (Collaboration)
Publications
Baatz R
(2021)
Reanalysis in Earth System Science: Toward Terrestrial Ecosystem Reanalysis
in Reviews of Geophysics
Charles Stock And Stefano Ciavatta
(2020)
Synergy between Ocean Colour and Biogeochemical/Ecosystem Models. IOCCG Report Series, No. 19,, Dartmouth, Canada. http://dx.doi.org/10.25607/OBP-711
Ciavatta S
(2019)
Ecoregions in the Mediterranean Sea Through the Reanalysis of Phytoplankton Functional Types and Carbon Fluxes
in Journal of Geophysical Research: Oceans
Ciavatta S
(2018)
Assimilation of Ocean-Color Plankton Functional Types to Improve Marine Ecosystem Simulations
in Journal of Geophysical Research: Oceans
Ciavatta S
(2022)
CAMPUS Science in Action
De Mey-Frémaux P
(2019)
Model-Observations Synergy in the Coastal Ocean
in Frontiers in Marine Science
Dutkiewicz S
(2020)
Synergy between Ocean Colour and Biogeochemical/ Ecosystem Models.
Dutkiewicz S
(2020)
Synergy between Ocean Colour and Biogeochemical/ Ecosystem Models.
Dutkiewicz S
(2020)
Synergy between Ocean Colour and Biogeochemical/ Ecosystem Models
Description | The CAMPUS project developed an integrated approach to combine autonomous observing networks and marine ecosystem models. This enabled better understanding of fine-scale marine processes and system variability, thereby demonstrating the utility of a combined observation-modelling system for ecosystem-based management. Marine ecosystems are vulnerable to climatic and nonclimatic stressors that result in changes to their physical, chemical, and biological state. These changes impact on marine ecosystem services and resources, such as climate regulation, biodiversity and sustainable fisheries. In response to these changes, marine legislation is becoming more sophisticated to the extent that marine ecosystem-based management is now specified within some national and regional legislative frameworks. To enact these frameworks effectively requires an evidence base of detailed environmental data, backed up by a thorough understanding of marine processes. Understanding, predicting, and ultimately managing, the relationship between multiple stressors and ecosystem services requires a close symbiosis between marine observing networks and marine ecosystem models. CAMPUS has advanced and integrated operational ecosystem models with autonomous data products to address the knowledge gaps associated with fine temporal and spatial scales with respect to plankton growth and associated biogeochemical cycles. The autonomous data products were provided to CAMPUS by the twin AlterEco project, which provided a continuous measurement campaign in the North Sea between November 2017 and January 2019. As part of CAMPUS, we performed a ground-breaking field campaign where an autonomous underwater glider was deployed and driven by model forecasts for three months in the western English Channel. The aim of the mission was twofold. Firstly, to challenge the navigational methodology, and to develop the concept of truly autonomous piloting driven by operational ecosystem model forecasts. Secondly, to use the glider's sensors to capture the variability in the spring bloom of phytoplankton in unprecedented detail. The glider took a virtual snapshot of the environmental conditions every 20 minutes, resulting in a total of 5,533 profiles. This allowed CAMPUS to capture fine-scale variability in the bloom dynamics that would have been missed by traditional sampling methods. CAMPUS and AlterEco jointly delivered the NERC Marine Integrated Autonomous Observing Systems (MIAOS) Programme, co-funded by the Department for Environment, Food and Rural Affairs (Defra) and the WWF-UK, and supported by in-kind contributions from Cefas, the Defence Science and Technology Laboratory (Dstl) and the Met Office. |
Exploitation Route | CAMPUS has demonstrated through specific case studies how the cutting-edge science we delivered by the project can be utilised and applied (https://zenodo.org/record/6359381#.YjMR1JTP0dU). Specifically, CAMPUS • demonstrated the applicability of merged modeldata products to Good Environmental Status (GES) assessment, • demonstrated short term forecast systems addressing phytoplankton blooms, Harmful Algal Blooms (HABS) and oxygen depletion events, • undertook a cost benefit analysis of potential observing system strategies for the UK, • improved our understanding of the distribution of marine litter in UK waters, and • assessed the applicability of CAMPUS outputs to industrial and ODA requirements. CAMPUS has set the pathway for 'smart' autonomy to tackle pressing environmental challenges, by uniting the most advanced observing systems with state-of-the-art computer modelling. |
Sectors | Agriculture Food and Drink Digital/Communication/Information Technologies (including Software) Environment |
URL | https://www.campus-marine.org/ |
Description | In the preliminary stages of the project, following initial discussion with Defra Marine and Fisheries Science and Analysis Team, MMO Evidence Team, and members of the Marine and Fisheries Monitoring Steering Group as part of WP1, it was decided that a review and alignment exercise across multiple NERC modelling programmes was needed. This provides a clear line of sight for government users as to how these models can be incorporated into their decision making, and allow CAMPUS to look for opportunities to ground truth existing models that may not previously have been recognised. Eventually, as specified also elsewhere, CAMPUS has demonstrated through specific case studies how the cutting-edge science we delivered can be utilized and applied, in consultation with institutional and Blue Growth stakeholders (https://zenodo.org/record/6359381#.YjMR1JTP0dU). Specifically, CAMPUS • demonstrated the applicability of merged modeldata products to Good Environmental Status (GES) assessment (in consultation with DEFRA and OSPAR) • demonstrated short term forecast systems addressing phytoplankton blooms, Harmful Algal Blooms (HABS) and oxygen depletion events (DEFRA, Scottish Sea Farms, ARCH-UK, The Missing Salmon Alliance) • undertook a cost benefit analysis of potential observing system strategies for the UK (UKIMON, DEFRA, MMO) • improved our understanding of the distribution of marine litter in UK waters, • assessed the applicability of CAMPUS outputs to industrial and ODA requirements (Pacific Regional Environment Programme) CAMPUS has set the pathway for 'smart' autonomy to tackle pressing environmental challenges, by uniting the most advanced observing systems with state-of-the-art computer modelling. In conclusion, CAMPUS, AlterEco and the NERC MIAOS programme as a whole delivered a blueprint of a smart, fully integrated, and cost-effective predictive system for ocean biogeochemistry to meet the needs of policy and Blue Growth stakeholders. Supported by this outcome, we envision the future implementation of a world-leading, fully operative modelling-monitoring network in the UK shelf-seas. This network would integrate high-resolution physical-biogeochemical models and machine learning algorithms with satellite data and water column observations of biogeochemistry, optics and acoustic. Short-term forecasts would lead the cruising of gliders towards predicted ecosystem "hot-spots": e.g., phytoplankton blooms, hypoxia phenomena. Implementation of such a network would require investment to sustain the continuous operation of smart gliders and a system for near-real-time control of data quality. Such a system would become a cornerstone of a Digital Twin of the Ocean for UK and overseas marine ecosystems. This system would also contribute to delivering a major outcome of the UN Decade of Ocean Science for Sustainable Development (2021-2030): "A predicted ocean, where society understands and can respond to changing ocean conditions". |
First Year Of Impact | 2018 |
Sector | Agriculture, Food and Drink,Digital/Communication/Information Technologies (including Software),Environment |
Impact Types | Economic Policy & public services |
Description | (SEAMLESS) - Services based on Ecosystem data AssiMiLation: Essential Science and Solutions |
Amount | € 1,499,851 (EUR) |
Funding ID | 101004032 |
Organisation | European Commission |
Sector | Public |
Country | European Union (EU) |
Start | 01/2021 |
End | 12/2023 |
Description | NOWMAPS 2 - EU Copernicus Marine Environment Monitoring Service (CMEMS) - Monitoring and Forecasting Centre of the North-West European Shelf-Seas (MFC NWS) |
Amount | € 1,000,000 (EUR) |
Organisation | Copernicus Marine Environment Monitoring Service |
Sector | Public |
Country | European Union (EU) |
Start | 03/2018 |
End | 03/2021 |
Description | NOWMAPS-3 |
Amount | € 3,600,000 (EUR) |
Organisation | Copernicus Marine Environment Monitoring Service |
Sector | Public |
Country | European Union (EU) |
Start | 12/2021 |
End | 12/2022 |
Description | OPTIMA (Optical Data Modelling and Assimilation) - Copernicus Marine Environment Monitoring Service (CMEMS) - Service Evolution |
Amount | € 122,585 (EUR) |
Organisation | Copernicus Marine Environment Monitoring Service |
Sector | Public |
Country | European Union (EU) |
Start | 03/2018 |
End | 03/2020 |
Description | TONOEC - Funding to support the research for the coordination and submission of a proposal for a large Horizon Europe grant (TOPIC ID: HORIZON-CL4-2022-SPACE-01-41) |
Amount | £10,000 (GBP) |
Organisation | The British Academy |
Sector | Academic/University |
Country | United Kingdom |
Start | 11/2021 |
End | 03/2022 |
Title | Boundary conditions for 1D modelling |
Description | Extracts ERA5 meteorological data and tidal forcings for any location worldwide, which is required as boundary conditions to the 1D GOTM-ERSEM model. |
Type Of Material | Improvements to research infrastructure |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | Delivery of CAMPUS project for the setup of 1D model systems at a range of UK sites. |
Title | Multi-platform data assimilation on the North-West European Shelf |
Description | We developed and validated a method to consistently assimilate glider biogeochemical data into NEMO-FABM-ERSEM model on the NWE Shelf. This method was subsequently extended to multi-platform (glider-satellite) data assimilation. |
Type Of Material | Improvements to research infrastructure |
Year Produced | 2019 |
Provided To Others? | No |
Impact | The plan is to use this method in a future operational system on NWE Shelf in order to assimilate multi-platform biogeochemical data. The results of this work will be available to the wide scientific community through a scientific publication (the relevant paper is currently submitted to journals). |
Title | 3D configuration for NEMO-FABM-ERSEM using stand-alone optical module |
Description | 3D NEMO-FABM-ERSEM model configuration for the AMM7 domain (North West European Shelf) using novel spectrally resolved stand-alone optical module. The optical module uses atmospheric fields (eg ozone, clouds, water vapour) to calculate both spectra and direction (diffuse or direct) of the incoming light into the water column. This information is crucial to improve how the model represents primary production and consequently ecosystem dynamics. The 3D configuration will be used to assimilate optical data (phytoplankton functional type absorption) into the NEMO-FABM-ERSEM model. |
Type Of Material | Computer model/algorithm |
Year Produced | 2019 |
Provided To Others? | No |
Impact | Will be used to better simulate ecosystem dynamics on the North-West European (NWE) Shelf. This development will eventually contribute to reanalysis of the ecosystem state on the NWE Shelf. |
Title | GOTM-ERSEM configuration files and model data for Stations L4 and CCS |
Description | GOTM-ERSEM configuration files and model data for Stations L4 and CCS used in the publication "Sensitivity of Shelf Sea Marine Ecosystems to Temporal Resolution of Meteorological Forcing" |
Type Of Material | Computer model/algorithm |
Year Produced | 2020 |
Provided To Others? | Yes |
Impact | As result of publication, was contacted by researcher from BBC Planet EARTH III looking for information on oceans and weather. |
URL | https://zenodo.org/record/3712237#.YEEK1mj7TD5 |
Title | Implementation of GOTM-ERSEM at various locations on UK shelf |
Description | A GOTM-ERSEM 1D model has been implemented for: Station E1 in the Western Channel Observatory, the Candyfloss station in the Central Celtic Sea, Liverpool Bay and a station in the North Sea for the time period 2008-2017. |
Type Of Material | Computer model/algorithm |
Year Produced | 2019 |
Provided To Others? | No |
Impact | The models are currently being used to test the impact of meteorological resolution on phytoplankton phenology and assessment of ERSEMs ability to capture inter-annual variability in shelf seas as part of the CAMPUS project. The model setups have already been used and will likely further be used by other researchers to test model developments and process understanding at these data rich sites. |
Title | NEMO-FABM coupler update |
Description | We have updated the PML-maintained biogeochemical coupler (NEMO-FABM) of the 3D hydrodynamic model NEMO to support more varied biogeochemical model configurations, including spectrally resolved light with feedback to physics (heating through light absorption) and depth-integrated fish stocks. New functionality is designed to integrate with existing biogeochemical models in FABM, including ERSEM and MEDUSA. |
Type Of Material | Computer model/algorithm |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | Used by various partners including the UK MetOffice in projects funded by e.g. CMEMS, NERC and Defra. |
URL | https://www.pml.ac.uk/Modelling_at_PML/Access_Code |
Title | NEMOVAR capacity to assimilate PFT absorption for different wavelengths |
Description | Extension of the observation operator and balancing code to handle 24 (6 wavelengths times 4 Phytoplankton Functional Types) new variables. The code translates PFT absorption increments into increments of the PFT components (ERSEM state variables) based on background ratios. |
Type Of Material | Computer model/algorithm |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | 2016 1 year reanalyses for PFT absorption and biogeochemistry on the NWE Shelf. |
Title | Reanalysis and regionalization of the biogeochemistry of the Mediterranean Sea (1998-2014) |
Description | We assimilated ocean-colour phytoplankton functional types into a three dimensional physical-biogeochemical model of the Mediterranean Sea, in a reanalysis spanning 1998-2014. Daily and/or monthly outputs were collected in a database (NETCDF files) that is freely available on request to Stefano Ciavatta |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | The post-processing of the database led to a novel definition of ecoregions in the Mediterranean Sea, based on the spatial distribution of the phytoplankton community structure and related carbon fluxes. The main purpose of such regionalization is to support Blue Growth in the Mediterranean Sea, and to test analysis tecniques that can be applied in the context of the North West European Shelf-Seas. These findings are the object of a manuscript submitted to Journal of Geophysical Research - Ocean |
Title | Two-way coupled NEMO-FABM-ERSEM model on the AMM7 domain |
Description | A spectrally resolved bio-optical module driving biogeochemistry is used here to drive also the heat fluxes. Since the module attenuates light based on the ERSEM tracer distributions, the development introduces a feedback from biogeochemistry to physics (a two-way coupling between physics and biogeochemistry). |
Type Of Material | Computer model/algorithm |
Year Produced | 2020 |
Provided To Others? | Yes |
Impact | Improvement in the skill of both physical and biogeochemical model. Produced a manuscript that is going to be soon submitted to JGR-Oceans. |
Title | fabm-spectral: spectrally resolved light modelling |
Description | Spectrally resolved light model for improved predictions of underwater light, allowing better predictions of photosynthesis, photodegradation/photobleaching (by UV) and heating ue to underwater light absorption. The model is coded within FABM (http://fabm.net) to support use in 1D and 3D hydrodynamic models, and direct linking to ecosystem models including ERSEM. |
Type Of Material | Computer model/algorithm |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | Contributing to projects funded by Copernicus - Marine environment monitoring service (OPTIMA) and NERC (CAMPUS), already used by colleagues internationally. |
Description | Chair of the NPOP Marine Data Assimilation WG |
Organisation | National Partnership for Ocean Prediction (NPOP) |
Country | United Kingdom |
Sector | Private |
PI Contribution | Leadership of UK marine data assimilation application in operational framework; Scientific discussion; Oral presentation at the 3rd NPOP/NCOF Data Assimilation Workshop (University of Reading, 26/10/2015) |
Collaborator Contribution | Scientific discussion; Workshop organization |
Impact | Oral presentation at the 3rd NPOP/NCOF Data Assimilation Workshop (University of Reading, 26/10/2015) |
Start Year | 2014 |
Description | GODAE DA-TT |
Organisation | Data Assimilation Task Team (DA-TT) |
Country | United States |
Sector | Public |
PI Contribution | Scientific discussion |
Collaborator Contribution | Scientific discussion |
Impact | Scientific discussion |
Start Year | 2015 |
Description | GODAE MEAP-TT |
Organisation | Marine Ecosystem And Prediction Task Team (MEAP-TT) |
Country | Canada |
Sector | Public |
PI Contribution | Scientific discussion on marine modelling/data assimilation; Oral presentation on data assimilation, through skype, at the "MEOPAR/ GOV Marine Ecosystem Analysis and Prediction Workshop", Dalhousie University, Halifax, Canada, 23-24 June 2015 |
Collaborator Contribution | Scientific discussion on marine modelling/data assimilation |
Impact | Oral presentation on data assimilation, through skype, at the "MEOPAR/ GOV Marine Ecosystem Analysis and Prediction Workshop", Dalhousie University, Halifax, Canada, 23-24 June 2015 |
Start Year | 2015 |
Description | Mercator Ocean International Science Board |
Organisation | Mercator Océan |
Country | France |
Sector | Private |
PI Contribution | I provide expertise on marine ecosystem modelling and data assimilation to revise and plan the science strategy of Mercator Ocean International (MOI) |
Collaborator Contribution | Being in the MOI Science Board puts me in a strategic position to steer R&D and funding. |
Impact | - Review report on the MOI activity in 2020-2021 |
Start Year | 2020 |
Description | Royal Met Soc - DA SIG |
Organisation | Meteorological Office UK |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I am member of the Organizing Committee of the Special Interest Group of the Royal Meteorological Society |
Collaborator Contribution | I brought unique expertise on ocean biogeochemical data assimilation within the workshops organized by this SIG |
Impact | Workshops and discussions on the advancement of data assimilation. |
Start Year | 2015 |
Description | Royal Met Soc - DA SIG |
Organisation | University of Reading |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | I am member of the Organizing Committee of the Special Interest Group of the Royal Meteorological Society |
Collaborator Contribution | I brought unique expertise on ocean biogeochemical data assimilation within the workshops organized by this SIG |
Impact | Workshops and discussions on the advancement of data assimilation. |
Start Year | 2015 |
Description | UN Decade of Ocean Sciences - Programme ForeSea - Steering Committee |
Organisation | Dalhousie University |
Country | Canada |
Sector | Academic/University |
PI Contribution | I provide expertise on the prediction of ocean biogeochemistry by means of assimilative ocean models |
Collaborator Contribution | They provide expertise on ocean physics predictions |
Impact | The programme has just started. No major outcomes to report so far |
Start Year | 2021 |
Title | FABM-spectral |
Description | FABM implementation of the Ocean-Atmosphere Spectral Irradiance Model (OASIM), which simulates the propagation of spectrally resolved direct and diffuse irradiance in atmosphere and oceans. The spectral range of the model is configurable and can include any wavelength between 200 and 4000 nm. Thus it can include total shortwave, ultraviolet, and photosynthetically active radiation, among others. This implementation is designed for online coupling to hydrodynamic-biogeochemical models through FABM. Both atmosphere and ocean components run online as part of the coupled simulation and are directly forced by bulk meteorological properties. The modelled underwater irradiance can drive biogeochemical processes and, in turn, biogeochemical variables can affect (spectrally resolved) light absorption and scattering. The model also calculates light absorption per water layer, which can be fed back to the physical model as a heating term. |
Type Of Technology | Software |
Year Produced | 2021 |
Open Source License? | Yes |
Impact | FABM-spectral is a model component that provides a crucial link between hydrodynamics, biogeochemistry and remotely sensed observations. It enables bidirectional exchange of information between these three domains. It has supported developed and testing of new methods for data assimilation in the Copernicus Marine Environment Monitoring Service (project OPTIMA: Optical data modelling and assimilation, https://pml.ac.uk/Research/Projects/OPTIMA), feedbacks from biogeochemistry to physics in CAMPUS (https://www.campus-marine.org), and further data assimilation developments in the Horizons 2020 project SEAMLESS (https://www.seamlessproject.org). Ultimately it will allow satellite observations to better constrains predictions of physics an biogeochemistry in marine waters. |
URL | https://zenodo.org/record/4594276 |
Description | CAMPUS project website |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Website created to highlight the project, its aims and objectives. The website has helped to engage with target user audiences and will be regularly updated throughout the project. |
Year(s) Of Engagement Activity | 2018 |
URL | http://www.campus-marine.org |
Description | Co-charing the session of the Copernicus Marine Enviornment Monitoring Service (CMEMS) at EGU General Assembly 2018 |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | The session provided scientific basis and ideas to define the future development of operational oceanography. |
Year(s) Of Engagement Activity | 2018 |
URL | https://meetingorganizer.copernicus.org/EGU2018/session/26768 |
Description | Discussion with researcher from BBC Planet Earth III |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Media (as a channel to the public) |
Results and Impact | As a direct result of our CAMPUS funded publication "Sensitivity of Shelf Sea Marine Ecosystems to Temporal Resolution of Meteorological Forcing", I was contacted by a researcher for Planet Earth III wanting to know more about how weather impacts the oceans. A resulting video call discussing this took place and the researcher was going to report back to her director |
Year(s) Of Engagement Activity | 2020 |
Description | Inited talk at the Mercator Ocean International Marine Data Assimilation workshop |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Being a recognized expert in marine biogeochemical data assimilation, I was invited to give a talk entitled "State-of-the-art of biogeochemical data assimilation" at the international workshop organized by Mercator Ocean International (which is the organization implementing the Copernicus Marine Environment Monitoring Service in the framework of a delegation agreement with the European Union), in Toulouse, France, 5-6 September 2018 (https://www.mercator-ocean.fr/en/news/marine-data-assimilation/). The workshop objective was to set the scene for creating a long-term European infrastructure in marine data assimilation. The works of the workshop were reported in a document that has the aim to support the definition of a strategy for the development of Marine Data Assimilation in Europe. |
Year(s) Of Engagement Activity | 2018 |
URL | https://www.mercator-ocean.fr/en/news/marine-data-assimilation/ |
Description | Invited plenary talk at the OceanPredict 19 Symposium |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | I gave a talk on the future directions that marine biogeochemical DA should take, to an audience including the leading global actors of operational oceanography as well as the private sector and governmental users. The talk sparked question and interest on marine ecoystems. |
Year(s) Of Engagement Activity | 2019 |
URL | https://oceanpredict19.org/ |
Description | Invited talk (via teleconference) to the US National Oceanic and Atmospheric Administration (NOAA) Ocean Color Coordinating Group (NOCCG) |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | I was invited to talk about my ocean-colour data assimilation work to the NOCCG is a NOAA organization founded in 2011 by Dr. Paul DiGiacomo, Chief of the Satellite Oceanography and Climatology Division at NOAA/NESDIS/STAR. The purpose of the NOCCG is to keep members up to date about developments for satellite ocean color. They have representatives from all the NOAA line offices, including National Marine Fisheries Service, Office of Oceanic and Atmospheric Research, National Ocean Service, National Weather Service and from several levels of the National Environmental and Satellite Data and Information Service. |
Year(s) Of Engagement Activity | 2018 |
Description | Invited talk at international "The Global Biogeochemical-Argo Fleet: Knowledge to Action Workshop": Title: "Assimilation of biogeochemical data in marine ecosystem models: status and perspectives" |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Invited talk at international workshop to promote the expansion of the BGC-Argo fleet to study/predict the ocean |
Year(s) Of Engagement Activity | 2021 |
URL | https://www.youtube.com/watch?v=UoGMuMDIUxw |
Description | Invited talk at the CMEMS General Assembly 2019 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | I represented the CMEMS Service Evolution (SE) programme in a talk on the impacts of the SE projects on CMEMS operational systems (including my SE projects TOSCA and OPTIMA). This wass an ideal venue to highlight PML/NCEO/NERC Data Assimilation impact on Copernicus marine services and beyond. The talk sparked questions and interest. |
Year(s) Of Engagement Activity | 2019 |
URL | http://marine.copernicus.eu/copernicus-marine-service-general-assembly/ |
Description | Invited talk at the Metcator Ocean Interantional Data Assimilation Workshop |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | This workshop aimed to shape the strategy for the future development of marine data assimilation for operational oceanography and research in Europe and beyond. |
Year(s) Of Engagement Activity | 2018 |
Description | Oral presentation at the ESA's workshop "Atlantic from space", Southampton, UK, 23-25 January 2019 |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | I gave a talk entitled "Decadal reanalysis of biogeochemical indicators and fluxes in the North East Atlantic ecosystem" at the ESA's workshop "Atlantic from space", Southampton, UK, 23-25 January 2019. This talk provide my expert contribution to the objective of the workshop, which was to assess the opportunities for Atlantic region focussed Earth Observation research and development, downstream activities and Information and communications technology (ICT) evolution, which may be the basis for future ESA investments to address some of the key information needs of this important area. |
Year(s) Of Engagement Activity | 2019 |
URL | https://eo4society.esa.int/event/atlantic-from-space/ |
Description | Oral presentation to the 35th meeting of the Monitoring, Assessment & Reporting Group (MARG) of DEFRA. |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | I presented the ambition and results of the UK NERC CAMPUS project, promoting the application o the science in marine policy and management frameworks. In particular, we discussed the outcomes of the project could usefully feed into our UK Marine Strategy and OSPAR monitoring and assessment programmes. |
Year(s) Of Engagement Activity | 2021 |
Description | Strategic discussions with JNCC |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | Alignment of research strategy with JNCC governance responsibility for Marine Protected Areas |
Year(s) Of Engagement Activity | 2019 |
Description | Talk at conference (Ocean Sciences Meeting 2020) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | The talk sparked questions |
Year(s) Of Engagement Activity | 2020 |
URL | https://www.agu.org/ocean-sciences-meeting/ |
Description | Talk at conference - EGU Assembly 2019 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Around 50 scientists assisted the talk, which stimulated questions and discussion. In particular, after listening my talk, the session convener asked me to develop a future collaboration to couple ERSEM to the MIT model of the Mediterranean Sea |
Year(s) Of Engagement Activity | 2019 |
URL | https://egu2019.eu/ |
Description | Webinar on marine ecosystem monitoring, modelling, assimilation to the ARCH-UK aquaculture community |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | I presented the outcomes of marine ecosystem monitoring, modelling, assimilation developed in CAMPUS and other projects.The objective was to promote the exploitation of these outcomes in the framework of aquaculture planning and monitoring. |
Year(s) Of Engagement Activity | 2021 |
URL | https://www.aquaculturehub-uk.com/events/2021/3/23/campus-applying-oxygen-monitoringmodelling-techni... |