Microbial hitch-hikers of marine plastics: the survival, persistence & ecology of microbial communities in the Plastisphere

Lead Research Organisation: Bangor University
Department Name: Sch of Natural Sciences

Abstract

The most abundant form of litter in the marine environment is plastic, and the negative and detrimental consequences of plastic debris on fish, reptiles, birds and mammals are well documented. The hard surface of waterborne plastic provides an ideal environment for the formation of biofilm for opportunistic microbial colonisers; however, our knowledge of how microorganisms interact with microplastics and alter the dispersal behaviour of marine plastics in the environment is a significant research gap. Biofilm at the interface between the plastic surface and the environment has been termed the 'Plastisphere', and although plastics are extremely resistant to decay, variability in composition determines their specific buoyancy and surface rugosity, which will dictate the extent of microbial colonisation and their ability for long distance dispersal. Furthermore, because plastic debris can persist in the marine environment longer than natural substrates, e.g. feathers and wood, it offers an opportunity for the wider dissemination of pathogenic and harmful microorganisms.

Microplastics from clothes, cosmetics and sanitary products are now common constituents of sewage systems and they frequently bypass the screening mechanisms designed to remove larger waste items from being exported to coastal waters. Microplastics entering aquatic systems from waste water treatment plants (WWTPs) come in close contact with human faeces, hence providing significant opportunity for colonisation by faecal indicator organisms (FIOs) and a range of human bacterial pathogens. Importantly however, there have never been any studies investigating the ability of enteric viruses binding to microplastics (or binding to the biofilm on the plastic surface), and this now needs critical evaluation in order to understand this potentially novel mechanism for the environmental dispersal of enteric viruses. Furthermore, there is growing evidence that the plastisphere can promote gene exchange, and so determining the potential of plastisphere biofilms for providing the surface for anti-microbial resistance (AMR) gene transfer is of the utmost importance. There is currently a lack of fundamental understanding about the mechanisms by which microorganisms, particularly pathogenic bacteria and viruses, can "hitchhike" on microplastic particles and be transported to beaches, bathing waters, shellfish harvesting waters and high benthic diversity zones. Consequently, it is not yet possible to determine the risk from these potential pathways, or establish environmental monitoring guidelines for informing future policy or environmental regulation. Therefore, the novelty of this project is to quantify the processes that are occurring within the plastisphere, and understand the potential for the vectoring of pathogenic viruses and bacteria.

Previous research on chemical co-pollutants present on plastics often fails to consider the likely impacts of plastisphere communities. Microplastics in the environment are potential vectors for these chemicals, which often desorb when ingested by marine species, and can accumulate in the food chain. Microbes in the plastisphere may either mitigate this problem through biodegradation, or enhance it by increased biofilm binding; however, most laboratory-based studies are carried out with pristine non-colonised plastics, and ignore the pivotal role the plastisphere plays on defining the risk of microplastics in the environment. By understanding the multi-pollutant and multi-scale effects of microplastics, the "Plastic Vectors Project" will help to establish a more accurate risk assessment of microplastics by taking into consideration the effects of harmful plastic-associated microbes together with chemical co-pollutants.
Therefore, the "Plastic Vectors Project" aims to quantify the significance and function of microbes in the 'plastisphere', and will deliver feasible solutions for reducing these multi-pollutant risks.

Planned Impact

This project addresses an issue of global relevance, and therefore the impact will be far-reaching. A range of key stakeholders have been actively engaged in the formulation and writing of this proposal to ensure that it directly meets their needs, complements existing research and is fit for purpose. Specifically, this proposal will be of benefit to policy makers and regulators, both national and international. The main UK beneficiaries will be Defra, Scottish Environmental Protection Agency, Environment Agency (and devolved equivalents), the NHS, and NGOs, e.g. Surfers Against Sewage, as well as UK academia. In addition, our research output will be of use to those water companies gearing up to significantly invest in measures to update wastewater infrastructure; our project offers a time-limited opportunity to prepare for the developing legislation aimed at mitigating the release of microplastics from WWTPs. The project will also benefit healthcare providers (e.g. NHS) by generating additional knowledge of the potential health impact of microplastics and the unknown dimension of how microplastics may in fact support other human health hazards and exposure pathways. Internationally, the work will directly inform the European Environment Agency, EU-DG MARE and EU-DG SANCO; additionally, data from this project will be significant for European legislation on the use of microplastics as ingredients in cosmetics and sanitary products.

The project team are well-placed to ensure that research findings are disseminated with highest impact given existing links to Defra, SEPA & other bodies. UK regulators will gain access to more complete and integrated understanding of how multiple hazards can interact in aquatic systems. Our results will provide more certainty with regard to the multi-pollutant and multi-scale effects of microplastics, and will deliver a more accurate risk assessment of microplastics by integrating the effects of harmful plastic-associated microbes together with chemical co-pollutants. Importantly, the "Plastic Vectors Project" will benefit from an advisory board of invited experts (see letters of support) who will enable critical evaluation of the direction of the project, and thus endorse our approach as 'fit-for-purpose' for a wide range of relevant stakeholders

We propose a multifaceted way of disseminating our project findings and realising impact. To engage with our stakeholders we will capitalise on our strengths of disseminating results to public, scientific, regulatory and policy audiences by using radio and TV interviews, public meetings (e.g. Café Scientifique), stakeholder and KE workshops, bespoke websites, social media, scientific and non-scientific publications. We aim to stimulate interest in the multi-pollutant impacts of microplastics covered in our project by targeting young people and children at science fairs and festivals (in Scotland, Wales and England), and inspiring change in the way we interact with plastics in our everyday lives.

Publications

10 25 50

 
Description New methodologies. Bangor team has developed a novel Particle Tracking Method (PTM) to predict and visualise the end-life of microplastic once it has entered the marine environment. This method identifies plastic sources, their pathways and sinks - taking into account different plastic types, behaviours, transformations and interactions. Comprehensive methods to simulate plastic dispersal are so far undeveloped across a range of scales and plastic compositions. We are currently leading the way in this field by developing new models that: (i) accurately simulate 3D integrated catchment-to-coast hydrodynamics suitable for plastic dispersal modelling - applied to two contrasting catchments and estuaries; (ii) incorporate a range of microplastics of different compositions and densities; (iii) simulate changes in plastic composition such as through biofilm development that include microbial communities, microplastic breakdown, aggregation, and changes in chemical composition; and (iv) boundary effects such as interactions with seabed sediment or surface wind drag. This is the first time that these important parameters are incorporated in a single modelling framework across the freshwater-marine continuum.
Important results. Modelling.
Realistic simulated current-fields leading up to data collection for modelling microplastic transport (i.e. source ? sink). Through an iterative sensitivity approach that tested above parameters, the simulations were improved against the data. The validated modelling method was used to explore scenarios and storylines that capture the range of plastic dispersal under different environmental and human conditions that lead to human health risk from microorganisms and viruses, identifying likely hotspots of microplastic/virus accumulation.

Plastic-colonising microorganisms and AMR profiling:
Large-scale (mesocosm) experiments were carried out with various plastics species incubated in wastewater effluent, river water, estuarine water, and in the seawater for four months were conducted using gene amplicon and shotgun metagenome sequencing. Interestingly, within a short time, wastewater effluent-associated microorganisms were replaced by non-pathogenic marine bacteria, some members of which, Thalassolituus and Sphingomonas spp., Alcanivoracaceae and Oleiphilaceae, known for their natural ability to clean up hydrophobic organic pollutants in the sea, colonise and/or degrade plastics. Microbial biofilms were also susceptible to attacks of Saprospiraceae feeding on colonising bacteria at late colonisation stages. Another group of bacterial predators, Bdellovibrionaceae, were prominently feeding on bacterial biofilms from the very early phases of their development. AMR gene counts declined in the course of experiments, reflecting the removal of wastewater-borne microorganisms, and consequently, plastic surfaces did not become enriched for key AMR genes. Hence, plastic surfaces did not act as a risk factor or as hotspots for AMR proliferation in our large-scale simulations .

Plastic-degrading enzymes.
In the mesocosm metagenome we have identified approx. 30 putative enzymes for with proteins were expressed, purified and characterised, of which 6 ester hydrolases and 5 oxidases were soluble. These enzymes exhibited activities vs diverse model and natural substrates. Further research was focussed on mining new microbial enzymes active towards so-called 'bio-based', yet recalcitrant, polymers. We used three types of bio-based polymers, for setting up high-temperature enrichment cultures using microbial communities from hydrotherms of volcanic island of Ischia. Three high-temperature-active and thermostable polyesterases were structurally and biochemically characterised: they hydrolysed polylactic acid, trimeric polyethylene terephthalate (3PET) and T-2 mycotoxin important in cereal grains. Additionally, we retrieved, expressed, and characterised 40 polyester-active enzymes from our metagenomic collections and extremophilic genomes, homologous to the Ischia enzymes. Hot submarine vents metagenomes, hydrocarbons-polluted harbour and wastewater treatment plant-derived, wild-type, highly thermostable enzymes exhibited high activity against polyesters, which was comparable with that of benchmark enzymes and were highly thermostable.
Exploitation Route Genomic data produced in frames of this project are of a high value for further research into industrially relevant enzymes from plastic-colonising microorganisms. Biochemical characterisation of enzyme candidates (monooxygenases, P450, peroxygenases, catalases/peroxidases and polyesterases) will be continued in frames of EU Horizon Framework-funded project 'FuturEnzyme' and potentially implemented for engineering microorganisms in recently approved UKRI Engineering Biology Mission Hub Project 'EBIC'.

The project results will be beneficial to policy makers and regulators, both nationally and internationally. The main UK beneficiaries will be the NHS, Defra, Natural Resources Wales, Scottish Environmental Protection Agency), water companies, NGOs, and UK academia. The policy brief "The hidden risks of beach plastic pollution" has been drafted and is being developed to include e.g. recommendations on raising awareness of the risks posed by certain types of plastics, educational campaigns about the public health disease and infection risk of plastic pollution on beaches, development of environmental monitoring guidelines, engineering solutions to reduce microplastic discharge from WWTPs, improvements in CSO function, and others.

We were successful in securing the funding from UKRI for two Engineering Biology Mission Hubs, P3EB, led by Portsmouth and EBIC, led by Cranfield. Both projects (£2.3M, combined), are about to start.
Sectors Chemicals

Education

Environment

Healthcare

Manufacturing

including Industrial Biotechology

 
Description Addressing Marine Plastic Waste & Climate Change in Indonesia
Amount £49,680 (GBP)
Organisation British Council 
Sector Charity/Non Profit
Country United Kingdom
Start 07/2020 
End 03/2021
 
Description BlueAdapt: Reducing climate based health risks in blue environments: Adapting to the climate change impacts on coastal pathogens.
Amount € 1,098,778 (EUR)
Organisation European Commission 
Sector Public
Country European Union (EU)
Start 03/2022 
End 04/2026
 
Description FuturEnzyme: Enzymes for more environment-friendly consumer products
Amount € 6,000,000 (EUR)
Funding ID 101000327 
Organisation European Commission H2020 
Sector Public
Country Belgium
Start 05/2021 
End 05/2025
 
Description GCRF_NF252 Co-surveillance of Wasterwater and Environmental Water Samples for SARS-CoV-2 and Pathogenic Viruses in South Africa and Nigeria: Incidence
Amount £324,336 (GBP)
Funding ID EP/V044613/1 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 11/2020 
End 05/2022
 
Description HEFCW Infrastructure Grant
Amount £163,000 (GBP)
Organisation Higher Education Funding Council for Wales (HEFCW) 
Sector Public
Country United Kingdom
Start 09/2019 
 
Description Mapping social inequality in flooding: Will future flooding predominantly happen in recreation areas and rich neighbourhoods?
Amount £9,798 (GBP)
Organisation Bangor University 
Sector Academic/University
Country United Kingdom
Start 07/2022 
End 10/2022
 
Description Modelling the transport and fate of microplastics in river estuaries, Mobility grant of COTE cluster of excellence (France), awarded to Dr Neil Dickson
Amount £3,000 (GBP)
Organisation University of Bordeaux 
Sector Academic/University
Country France
Start 05/2020 
End 06/2021
 
Description National COVID-19 Wastewater Epidemiology Surveillance Programme
Amount £791,191 (GBP)
Funding ID NE/V010441/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 06/2020 
End 11/2021
 
Description Offshore sediment resource and dynamics within Liverpool Bay and their importance to coastal infrastructure and natural barriers
Amount £60,000 (GBP)
Organisation Knowledge Economy Skills Scholarships (KESS) 
Sector Public
Country United Kingdom
Start 09/2020 
End 10/2023
 
Description Pathogen Surveillance in Agriculture, Food and Environment Programme: Norovirus and AMR in coastal waters
Amount £372,000 (GBP)
Organisation Food Standards Agency (FSA) 
Sector Public
Country United Kingdom
Start 09/2022 
End 04/2024
 
Description Pathways to Realistic Impact Modelling in Estuarine Areas (PRIMEA)
Amount £70,000 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 09/2020 
End 09/2023
 
Description Predicting future compound hazards of coastal flooding.
Amount £70,000 (GBP)
Organisation Knowledge Economy Skills Scholarships (KESS) 
Sector Public
Country United Kingdom
Start 03/2020 
End 04/2023
 
Description Sensitivity of Estuaries to Climate Hazards (SEARCH)
Amount £198,088 (GBP)
Funding ID NE/V004239/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 07/2020 
End 08/2023
 
Description The influence of groundwater and soil conditions on future flood risk of UK estuaries
Amount £75,000 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 09/2022 
End 10/2026
 
Description Travel grant to EPOC (Environnements et Paléoenvironnements) laboratory, University of Bordeaux, France for Neil Dickson
Amount £2,280 (GBP)
Organisation University of Wales 
Sector Academic/University
Country United Kingdom
Start 07/2020 
End 06/2021
 
Description Use of wastewater analysis to evaluate the incidence of coronavirus (SARS-CoV-2) in the UK population
Amount £197,108 (GBP)
Funding ID NE/V004883/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 03/2020 
End 06/2021
 
Description Viral dark matter: The emergence and distribution of human and animal viruses in Nigerian waters
Amount £33,718 (GBP)
Organisation United Kingdom Research and Innovation 
Sector Public
Country United Kingdom
Start 06/2020 
End 10/2020
 
Title Model development for the Conwy 
Description Research Tools & Methods Model development for the Conwy We used a tidal model (Telemac Modelling System V7.2; www.opentelemac.org) to simulate circulation and water quality in the Conwy estuary and surrounding coast. The Telemac model was set-up in vertically-averaged mode. The model simulates in space and time the evolution of elevations, water depths, velocities, salinities, temperatures and dispersion of dissolved substances such as nutrients and viruses with or without die-off. Telemac uses an unstructured mesh, which in this case comprised 120,000 nodes connected on an unstructured triangular configuration (Fig. 1). This mesh was mapped on to observational bathymetry data, with varying resolution; being very high within the estuary (~20m) and coarser o?shore (50m-2km). Bathymetry for the Conwy estuary has been attained from the UK Government's ADMIRALTY Marine Data Portal (www.admiralty.co.uk/ukho), as well as in-house (Bangor) surveys within the estuary and LiDAR data from the Environment Agency. Additionally, bathymetry data in the outer estuary and surrounding coast has been attained from Admiralty data products at 200 m spatial resolution (digimap.edina.ac.uk/marine). The model is hydrostatic and based on the depth-averaged shallow water equations of momentum and continuity (Hervouet, 2007), with depth-averaged turbulent mixing (Rastogi and Rodi, 1978). For more information on the model parameterisation, see Robins et al. (2019). For information on model validation, please see Robins et al. (2014). 
Type Of Material Improvements to research infrastructure 
Year Produced 2019 
Provided To Others? Yes  
Impact The Telemac model is well suited to vertically-mixed coastal applications since the mesh can be optimised to adequately resolve coastal features and the model incorporates wetting/drying capabilities of inter-tidal regions. 
 
Description Collaboration with the Finnish Academy-funded Project "BIPOD": Biodegradable plastic polymers in ocean coastal waters - degrader communities and their enzymes 
Organisation University of Helsinki
Country Finland 
Sector Academic/University 
PI Contribution Coastal seawater mesocosm experiments on the exposure of bio-based plasics were set up in parallel in four locations: Baltic Sea North Sea (Tromsö) Irish Sea (Menai Strait) Mediterranean Sea (Messina Strait) Bangor team has set up and monitors the mesocosm experiment in Menai Bridge, samles of bio-based plastics (PLA, PHB, PBS, etc) are regularly collected and preserved for consequent analysis of microbial community composition, which will be done by the end of 12 months-long experiment
Collaborator Contribution Providing access to the data for all samples (s. above). Providing samples for DNA shotgun sequencing and prediction of plastic-degrading enzymes for functional characterisation
Impact the experiment is still ongoing, no outputs produced so far
Start Year 2021
 
Description Collaborations with flood agencies 
Organisation Environment Agency
Country United Kingdom 
Sector Public 
PI Contribution Data and knowledge on compound flooding
Collaborator Contribution Data and knowledge on compound flooding
Impact Three papers published plus three in-prep detailing compound flooding research. Impact acceleration proposal on compound flooding in review.
Start Year 2020
 
Description Collaborations with flood agencies 
Organisation Natural Resources Wales
Country United Kingdom 
Sector Public 
PI Contribution Data and knowledge on compound flooding
Collaborator Contribution Data and knowledge on compound flooding
Impact Three papers published plus three in-prep detailing compound flooding research. Impact acceleration proposal on compound flooding in review.
Start Year 2020
 
Description Collaborations with flood agencies 
Organisation Scottish Environment Protection Agency
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Data and knowledge on compound flooding
Collaborator Contribution Data and knowledge on compound flooding
Impact Three papers published plus three in-prep detailing compound flooding research. Impact acceleration proposal on compound flooding in review.
Start Year 2020
 
Description Collaborations with the UK Met Office 
Organisation Meteorological Office UK
Country United Kingdom 
Sector Academic/University 
PI Contribution Feedback on sea level climate data for impact research
Collaborator Contribution Provide sea level climate data
Impact Papers on future compound hazards in-prep
Start Year 2020
 
Description "Activity-Based Bioprospecting for Hydrolases In Enrichment Cultures from Thermal Vents of Ischia Island (Italy)" Oral presentation 15th International Congress on Thermophiles, "Thermophiles-2019" Fukuoka, Japan, September 2-6, 2019. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Oral presentation at a very important International Congress, attended by approx 300 researchers from across the world. Few important links established (e.g. with researchers from Institute Pasteur and Unis of Fukuoka, Naples and Tokyo), existing collaborations fostered (e.g. NCBI/NLM/NIH, Universities of Bergen, Vienna and Copenhagen).
Year(s) Of Engagement Activity 2019
URL http://www.acplan.jp/thermophiles2019/
 
Description "Bioprospecting for new enzymes in petroleum-degrading microorganisms", Oral presentation at the Environmental Biotechnology Network (EBNet) Research Colloquium Edinburgh, January 22-23, 2020 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Oral presentation at the event organised by Environmental Biotechnology Network (EBNet, BBSRC-funded) Colloquium Edinburgh, attended by >60 academics, industry and science-funding bodies. Important discussions on harnessing microbial processes to mitigate petroleum and plastics pollution in marine environment
Year(s) Of Engagement Activity 2020
URL https://ebnet.ac.uk/ebnetrc2020/
 
Description "Marine petroleum-degrading microorganisms, their ecology and applications", Keynote presentation at the Seminar, Biodiversity and applications of marine microorganisms and their enzymes, Catholic University of Valencia, March 5, 2019 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Keynote presentation at the Seminar, Biodiversity and applications of marine microorganisms and their enzymes, Catholic University of Valencia, attended by approx 90 masters and teaching staff, students, promoted lively discussion on various applications of enzymes from petroleum-degraading microorganisms, including plastics conversion
Year(s) Of Engagement Activity 2019
 
Description European Bioplastics Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact conference talk
Year(s) Of Engagement Activity 2023
 
Description Organisation of 16th International Congress "Thermophiles-2023", Bangor 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Study participants or study members
Results and Impact Organisation (together with Dr Olga Golyshina) of, and participation in the, 16th International Congress "Thermophiles-2023" in Bangor (29.08-02.09.2023) for >100 of leading and early-career scientists conducting research in thermophilic microorganisms (molecular biology, biochemistry, evolution, and biotechnological applications, including polyesters dergradation)
Year(s) Of Engagement Activity 2023
URL https://www.thermophiles2023.org/
 
Description School of Natural Sciences, Bangor University Open Days for perspective undergraduate students (three times per semester) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact The Open Days are organised by Bangor University to attract prospective students (and their family members) to enthuse with environmental and biotech research. In our laboratories, we demonstrated research facilities and explain our ongoing projects. Approximately 20 students and their family members (per visit) take part in conversations and express their interest in our science (approx 120 p.a.)
Year(s) Of Engagement Activity 2019,2020,2021,2022,2023
 
Description Visit of Agilent Technologies Centre in Didcot 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Industry/Business
Results and Impact Profs Davey Jones and Peter Golyshin visited Agilent Technologies campus in Didcot to acquire knowledge on and having a demonstration of the new plastics analysis platform, Agilent LDIR 8700
Year(s) Of Engagement Activity 2019
 
Description skills workshop - netherlands 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact skills workshop on methodology
Year(s) Of Engagement Activity 2024
 
Description visit of Tecan campus in Reading 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Study participants or study members
Results and Impact Two team members visited the Tecan campus in Reading to learn and expand their skills in programming and operating the liquid handling/colony picking robot Tecan Freedom Evo
Year(s) Of Engagement Activity 2019
 
Description • "Polyester-degrading enzymes from microorganisms inhabiting hot vents", Oral presentation, 5th European Summer School on Industrial Biotechnology Hamburg, July 3-6, 2023. 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Oral presentation in frames of the 5th European Summer School on Industrial Biotechnology Hamburg. Focus: "Functional metagenomics: from nature to biochemical functions" for >50 PhD students and early career scientists
Year(s) Of Engagement Activity 2023
URL https://www.conferences.uni-hamburg.de/event/311/