FUSED-Functionality of Urban Soils supporting Ecosystem service Delivery

Lead Research Organisation: Cranfield University
Department Name: School of Water, Energy and Environment

Abstract

Soil ecosystems provide critical ecosystem services that underpin human societies and wellbeing. Among others, these include: nutrient cycling, carbon sequestration, waste detoxification, and supporting primary productivity. The delivery of these ecosystem services is dependent upon the biodiversity contained within the soil, and the ecosystem processes and functions it regulates. A positive relationship between biodiversity and ecosystem processes/function has been well documented in natural and agricultural soils, and importantly has been demonstrated to change following even very small or localised modifications to the soils environment. Thus modifications to soils that change the biodiversity present, will alter the delivery of ecosystem services on which humanity depends. However, a large amount of soil within the UK (and N. Europe) is contained within urban environments, and despite these comprising a huge variety of different soils types with a vast range of internal modifications, we know practically nothing about the biodiversity contained in these urban soils, the relationships between this and the ecosystem processes/functions it supports, and how this links to the delivery of key ecosystem services.

Our project (FUSED) will address all these knowledge gaps, by examining the links between the physical and chemical structure of urban soil, the biodiversity it contains, the ecosystem processes and functions this supports and the delivery of four key ecosystem services (nutrient cycling, carbon sequestration, waste detoxification, and primary productivity). To achieve this we will focus on existing gradients of urbanisation in SE England. This region comprises areas of long-term industrial use, areas redeveloped upon an industrial legacy, green spaces, new urban developments, alongside urban conurbations ranging from small villages with low human population densities, to high-density cities, and with smaller areas of pristine habitat and large swaths of agricultural land - providing the full catalogue of urban soil types, from entirely natural, those modified for agriculture and urban green space, to Technosols formed from artificial material and soils with sealed (e.g. under paving/roads) surfaces. Importantly this region, as a historical and contemporary focus of urban development, provides a window into the future of what the wider UK landscape will look like and the novel urban ecosystems it will contain.

First we will identify generalisations by examining how the environmental context (degree of urbanisation, combined with contemporary and historical land-use, alongside urban soil type present) the urban soil is present in influences biodiversity, ecosystem processes/functions and ecosystem service delivery. Building upon this, we will establish a series of experimental manipulations that allow examination of how resilient and resistance urban soil biodiversity and associated ecosystem processes/functions are to modification and changes in environmental context. This combined, with tracking urban soil ecosystem through time, will provide a unique understanding of the ecological stability of these systems. Finally, we will integrate all collected data into a modelling framework that will provide a mechanistic understanding of factors underpinning the responses of soil biodiversity, ecosystem processes/functions and delivery of ecosystem services to current and future modifications.

Planned Impact

Who will benefit?
FUSED takes a multidisciplinary approach to better understand the physical, chemical and biological characteristics in urban soil (and urban dust), and how these change across urban environments. There are several end-user beneficiaries in both private & public sectors including the Environment Agency (EA), Defra, Department of Health (DoH), Public Health England, NHS hospital and healthcare authorities, industry e.g. chemical and waste processing companies, County Councils and local authorities all of which who can promote the project findings and make sure the recommendations are taken up. The project will also benefit academics and the public.

How will they benefit?
Project outputs have the potential to enhance quality of life, health & environment as follows:

1) Urban soil chemical data (including aerial deposition via urban dust) will inform biotech-chemical industry on operational best-practice enabling improved mitigation strategies to be developed for chemical detoxification and removal. It will also inform EA policy of the regulation of waste from the chemical industry.

2) DNA sequence data can be used by researchers to identify key functional group of microbes and their genes as a biomarker proxy for potential contaminant detoxification and removal. This will allow a more targeted management of urban soils in locations in close proximity to industry or industrial legacy where contaminant exposure poses potential risks.

3) The metagenetic and microbial data will inform EA, Defra, local authorities, and industry on how microbial functional diversity changes following urban soil modification.

4) Microbiome data; specifically microbial community structure, gene abundance and expression e.g. those encoding N-cycle transformations will provide important insights into how urban soils can be exploited. For example, to increase plant N metabolism and soil N cycling enabling increased nutrient status of such soils for plant productivity. This will inform Defra's policies on the impact of nutrient pollution on the environment (e.g. Nitrates Directive, Water Framework Directive, EA policy of Urban Wastewater Treatment Directive).

5) Data from the project will produce a model providing a better understanding of the ecosystem services provided by urban soils and urban dust to the built environment. This will enable County Councils, local Authorities (especially Town Planners) to manage urban soil changes in the future in an informed manner, thus reducing potential environmental exposure and human health risk.

6) The project will produce three trained PDRAs with molecular, analytical and modelling skills who can enter private/public sector marketplace.

7) Any IP resulting from the project will foster industrial collaborators and enhance economic competitiveness of UK.
 
Description The output of the project is a comprehensive data set of physical, chemical and biological characteristics of urban soils across gradients of urbanisation in SE England. Large number of samples have been collected during a winter and a summer campaign and specifically we characterised the physical data. These data include bulk density, wetness, infiltration rate, penetration resistance, and on selected samples the physical structure obtained with Xray CT. these data show wide ranging differences in density across gradients of urbanisation and land uses as well as differences in processes such infiltration between summer and winter campaigns with increasing repellency in some areas. Further and more detailed analysis is still underway, in particular to explore interrelationships with the chemical and biological characteristics obtained by project partners and how the combined properties affect soil functioning.
A second output is a modelling framework that has been developed and further adapted to explore the impact of characteristics on soil functioning. Due to delays due to COVID this has in first instance focused on physical characteristics and functioning and specifically novel modelling at pore scale related to hydrological properties and upscaling. Preliminary development has been done on a new data set that was generated at Diamond and ISIS. The data obtained from Diamond (X-ray CT) have been used to obtain microscopic descriptors of urban soils and a novel Lattice Boltzmann model was developed to calculate hydrological properties based on pore geometry and verify these with macroscopically obtained infiltration measurements. This provided further insights about the links between macroscopic and microscopic soil descriptors that are routinely measured.

As part of the development of physical and microbial models, we reviewed the various modelling approaches, including our own, that exist and are applied to X-ray CT data characterising pore geometries to understand how physical structures mediate microbial communities. This is an area of growth in academia with the increasing application of X-ray CT, yet a comprehensive review of the various approaches to date wasn't available. We demonstrate the progress and advantages of various approaches and how to balance complexity versus data uncertainty. This guided direction of travel for our own modelling approach. A substantial challenge of these micro-scale properties is the question how this scales to larger scale properties. We reviewed progress in this area with an opinion paper focused on the rhizosphere and postulated how upscaling from pore scale to the field can be achieved with homogenisation or by deriving effective physical parameters like viscosity from nano-scale chemical properties for some process, whilst considerable challenges in microbial processes remain. We also demonstrated how pore scale processes have contributed already considerably to our understanding of the rhizosphere and distributed our views in a blog written with a science writer entitled 'Unlocking the power of microorganisms to boost crop production'. These results highlighted the wider applications of the modelling approaches developed in this project.
Exploitation Route The mapping of the current state of modelling has generated new insights and ideas of how this can lead to improved understanding of the rhizosphere, which was part of the fellowship proposal that secured a new position for the PDRA in Spain.
It is expected that implication for urban soils will come forward following more comprehensive analysis of the data sets which is ongoing.
Sectors Agriculture, Food and Drink,Education,Environment

 
Description The early stage of the impact has focused on promoting the modelling approach and consideration of soil structure in microbial processes. A blog was written with a science writer for the Food Network, entitled 'Unlocking the power of microorganisms to boost crop production' partly based on considering the role of soil structure and how this contributes to establishing the rhizosphere following approaches (characterisation of micro-structure of soils plus modelling) developed in this project. This emphasized the broader applications of the modelling approaches combined with pore scale characterisation of soil developed in the project. Samples generated in this study served as material for a master student project training the next generation of scientist in developing novel modelling approaches to physical processes in soil. Samples were generated via access to the Diamond facilities for samples selected from the large field sampling campaign. The impact of this is the training of the next generation of scientists with interdisciplinary skills.
First Year Of Impact 2022
Sector Agriculture, Food and Drink,Education
Impact Types Societal

 
Description Soilµ-3D 
Organisation AgroParisTech
Country France 
Sector Academic/University 
PI Contribution The funding enabled us to form a close collaboration with a consortium of academics on an ANR funded project entitled: Emergent properties of soil microbial functions: Upscaling from 3D modeling and spatial descriptors of pore scale heterogeneity. We contributed to project meetings, co-authored two papers reviewing the current state of characterising soils and microscale and what we have learned from such an approach via modelling. Our contribution focused in particular on fungal modelling where there was no expertise in the French consortium. In addition we contributed and co-organised an international workshop and provided X-ray CT data sets to the consortium which was used by their modellers to advance their bacterial modelling.
Collaborator Contribution The partners provided expertise on modelling bacterial dynamics, in experimental data that could be used for evaluating modelling approaches that we developed and provided expertise in Lattice Boltzmann modelling that we used on our samples obtained in the Urban soil project to calculate connectivity of hydrological pathways and soil hydrological functioning as affected by soil structure
Impact Pot V, Portell X, Otten W, Garnier P, Monga O & Baveye PC (2022) Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: insights derived from microscale models, European Journal of Soil Science, 73 (3) Article No. e13256. for this paper we contributed to the review from our expertise in bacterial and fungal modelling. Mbé B, Monga O, Pot V, Otten W, Hecht F, Raynaud X, Nunan N, Chenu C, Baveye PC & Garnier P (2022) Scenario modelling of carbon mineralization in 3D soil architecture at the microscale: toward an accessibility coefficient of organic matter for bacteria, European Journal of Soil Science, 73 (1) Article No. e13144. (for this publication we provided data) Pot V, Portell X, Otten W, Garnier P, Monga O & Baveye PC (2021) Accounting for soil architecture and microbial dynamics in microscale models: Current practices in soil science and the path ahead, European Journal of Soil Science, Available online 04 July 2021 (1).. We contributed to the review of the current state based on our developed expertise in modelling
Start Year 2019
 
Description access to ISIS and Diamond facilities 
Organisation Diamond Light Source
Country United Kingdom 
Sector Private 
PI Contribution During a visit to ISIS/Diamond facilities new ideas were developed to combine multiple techniques to visualize the physical, biological and chemical properties of the rhizosphere, data collection and analysis is now scheduled to take place during 2020.
Collaborator Contribution development of a proposal to secure beamtime at Diamond and ISIS
Impact no outputs yet; collaboration ongoing
Start Year 2019
 
Description ECR support at EUROSOIL 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact An early career grant writing contest was organised at EUROSOIL for early career researchers and and professionals. ECR's were tasked to form an international team and write a proposal for for an engagement linking soils and Sustainable Development Goals with a grant awarded to the winning team. the winning team had proposed to develop an engaging and entertaining soil management board game aimed at both children and adults to ask critical questions about soil science and its many roles. Following the success of this initiative it will be repeated at the upcoming world congress of soil science.
Year(s) Of Engagement Activity 2021
 
Description Farmers weekly Future Farm Technology 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Stand to dispaly research including research on cover crops at Future Farm technology EXpo, plus delivering of a talk to gether with a farmer on the use of technology to improve soils
Year(s) Of Engagement Activity 2019
URL https://www.fftexpo.com/en-gb.html
 
Description Food Network Blog 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Work was presented and an STFC workshop; following the workshop an interview took place with a science writer which results in a BLOG written for the food network addressing: unlocking the power of microorganisms to boost crop production. It is too early to assess impact of the blog, but he meeting resulted in access to ISIS and Diamond.
Year(s) Of Engagement Activity 2022
 
Description presentation premier graphics technology conference 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact A known limitation of GPGPU applied to spatially discretised
simulation models is the frequency of device-host data transfers
necessary to capture events of interest or otherwise provide
sufficiently dense data for the robust analysis of evolving state. To
reduce this burden, run-time analysis tools (i.e. executing on the
GPU) are developed to characterise the spatio-temporal evolution of
structure within 3D scalar fields. The Minkowski Functionals
(Matheron, 1967) are fundamentally important measures of spatial
structure and are used in diverse science and engineering domains. The 3D Minkowski Functionals (henceforth MF's) consist of four
measures: Volume, Surface-area, Integral Mean Curvature and Total
(Gaussian) Curvature. These measures together describe the
geometric and topological properties of objects in 3D space.
Year(s) Of Engagement Activity 2020