Molecular, microbial & enzymatic synergies and their significance to peatland condition

Lead Research Organisation: University of Edinburgh
Department Name: Sch of Chemistry

Abstract

Peat bogs are organic matter-rich soils that are widespread in the northern latitudes where they formed under cold, wet and glaciated landscapes. Despite the fact that peat bogs are seen by many as waste lands, they are vital to life on this planet. Peatlands are a major carbon (C) store and actively remove carbon dioxide from the atmosphere by changing the C in plant debris and locking it up as peat. In fact, peatlands store twice as much C as all the Earths' biomass. In addition, they act as a sponge which stores and filters water, preventing floods and safeguards our drinking water supply. They are also a rich habitat for unique plants and animals. However, peatlands can only deliver all these important services if they are healthy and, unfortunately, the majority of peatlands (>80% in the UK) are in a state of deterioration. This is a global concern, as peatlands in damaged states release C to the atmosphere and natural waters, which affects our daily life and hampers our efforts to combat climate change.
One of the major causes of peatland damage is drainage, as a bog can only form peat when it has a waterlogged anoxic layer that protects the stored C. In order to restore damage by drainage, the site is typically rewetted by installing dams. While we know that dams can bring back the water logged conditions and important surface plants may reappear, the question remains whether rewetting successfully restores bogs to their full health. To answer this question, we need to know what is happening below the surface and examine the roles of key players in peat formation and C cycling, namely the microbes, the enzymes and the C containing organic molecules. It is not clear which of these players is more important, or how do they depend on each other. Scientists have suggested that if certain protective molecules, so called phenolics or some carbohydrates are not present (e.g. removed because of drainage) then the peat bogs cannot store C. The question remains what controls the presence of these molecules? Is it specific microorganisms and the enzymes they release? Or is it the peat molecules that have the ultimate control over the microbes? Focussing on peatland drainage as the cause of damage, the aim of this project is to study these key players and to gain understanding of the processes leading to C storage/loss in peatlands. We plan to investigate several peatbogs in UK, but also abroad in Sweden and Canada to take into account different climates.
The technology to carry out this research now exists in form of DNA sequencing (microbes), biochemical methods (enzymes) and spectroscopy/spectrometry (molecules). In Edinburgh we have all the necessary equipment, in particular very powerful spectrometers for nuclear magnetic resonance and mass spectrometry to characterise the thousands of molecules that make up the organic matter in peat. Such an interdisciplinary approach will guarantee that we address the major gaps in our knowledge of the processes that lead C storage/loss in peatlands.
At the same time, we want to develop a simple method for monitoring the state of the peatbog and will therefore investigate a possibility to extend the teabag project (http://www.teatime4science.org/about/the-project/) that aims to provide information on the global C cycle by burying tea bags for 90 days in various soils and measuring the resulting weight loss. Our initial experiments indicate that by looking deeper at the molecular makeup of tea buried in peat in different conditions, we will be able to classify the state of peat bog.
To enable peatlands regain their functions, multimillion pound restoration projects are being set up around the world. This research aims to ensure that the approaches used in restoration/management of peatlands are underpinned by the latest scientific understanding that ensure the long-term protection of these vulnerable soils.

Planned Impact

Who will benefit?
The research outlined in this proposal has a far-reaching impact due to the number of global ecosystem services and social-economic benefits provided by peatlands. This research will therefore benefit the following bodies:
o Peatland stakeholders and organisations.
o Charitable bodies and conservation groups linked to peatlands.
o Environmental regulators.
o Policy makers (regional or national authorities/governments), concerned with climate change, biodiversity, conservation and land management.
o Government departments impacted by peatland ecosystem services.
o Water quality agencies.
o Water services providers.
o Companies using peatlands or peat, onshore windfarm construction companies.
o Landowners and landowner associations.
o Industries dealing with complex mixtures.
o General public, educators, students and society as a whole.

How will they benefit?
The overarching impact of this research is to promote the restoration and preservation of healthy peatlands by working towards understanding of the processes that lead to a given condition. Healthy functioning peatlands are vital for many of their ecosystem services from C storage, water filtration, and flood mitigation to supporting flora and fauna. Thus restoration of the damaged peatlands and ensuring their resilience to future changes is essential for the health and safety of society as well the maintenance of biodiversity.
Peatlands have far reaching societal-economic benefits. They are grounds for recreational activities such as hunting, hill-walking as well as a tranquil open space that promote well-being and a feeling of national identity. Peat is also the source of one of the essential flavours to the billion £ whisky industry.
A number of governmental agencies, non-profit organizations, landowners and industries are actively involved in peatland restoration and conservation. Research that leads to better understanding of how peatlands function and respond to land use changes is essential to inform their decision making processes and to guide the design of management protocols. Providing reliable and simple indicators of restoration efficiency (e.g. tea bags) is essential for ensuring optimal use of investments into peatland restoration.
Degraded peatlands are a major source of GHGs and research that leads to better understanding of the drivers of C cycling in peatland will help to produce more effective C accounting models. Such models are required as global GHG emissions targets bind national governments to put in place policy based responses that must be underpinned by solid scientific evidence.
Drinking water quality is threatened by increased DOC levels and pollutants potentially released from damaged peatlands. Knowledge of the origin and composition of these pools will allow design of more effective water treatment processes thus improving quality of potable water. Tools that enable effective characterisation of labile phases of peat will enable these industries to test their treatments and technologies.
A number of industries need to characterise complex mixtures such as food, drinks, fuel, pharmaceuticals, natural products, cosmetics in order to ensure quality standards and safety of their products. Protocols for characterising mixtures across multiple phases is of high interest to them. Bodies that aim to protect products from counterfeiters, or examine potential contaminants, will also benefit from the high resolution methodology developed in this project.
It is the public perception that will pave the way for actions safeguarding the peatlands for future generations. Therefore it is essential that the scientific knowledge of peatland restoration and conservation are convergent with public understanding of the importance of societal-economic benefits these ecosystems provide. The outreach part of this project aims to achieve this, thus helping science and ultimately bringing benefit the society as a whole.

Publications

10 25 50
 
Description Differences have been observed between peatlands of different health statuses on molecular and microbial levels.
The pore waters of UK sites also differ reflecting the impact of location and dominant vegetation on peatland chemistry.
Current methods published in the literature for looking at the enzyme activity of peat samples are not appropriate for peat samples from UK.
Methodology for extracting DNA and RNA from high organic matter samples like peat has been established.
Exploitation Route Our methods are applicable to peat across the world.
Sectors Environment

 
Description The water table data collected was made openly available to the RSPB for the site and used to assess the need to do further restoration. We have also informed by meetings all stakeholders involved in the project the importance of knowing the type of carbon below the ground and the importance of water table measurements and the methodology. This has lead to other stakeholders consider incorporating water table and below carbon measurement, this will have future impact.
First Year Of Impact 2022
Sector Environment
Impact Types Policy & public services

 
Title DNA extraction of high OM samples 
Description We have created methods for extraction of DNA from high OM samples like peat. 
Type Of Material Biological samples 
Year Produced 2023 
Provided To Others? No  
Impact This has allowed the successful extraction of peat DNA from peatlands across UK. 
 
Title PyKrev 
Description New freely available data processing and analysis python-based tool kit called PyKrev for the analysis of complex mixture mass spec data. 
Type Of Material Improvements to research infrastructure 
Year Produced 2021 
Provided To Others? Yes  
Impact Vastly improved data analysis times. Removes the need for proprietary software. Detailed instructions also allow new users from an undergraduate level to start to use PyKrev with their data comfortably in a matter of days. 
 
Description Canadian peatland 
Organisation Mount Royal University
Country Canada 
Sector Academic/University 
PI Contribution We have held initial discussions regarding the use of our methods to examine peatlands in Alberta Canada.
Collaborator Contribution They have shared site knowledge with us and have offered help with some of the practicalities (e.g. lab space, transport). They have helped us design a possible sampling protocol.
Impact Just initiated.
Start Year 2023
 
Description FT-ICR-MS of reservoir DOM 
Organisation University of Leeds
Country United Kingdom 
Sector Academic/University 
PI Contribution Knowledge exchange. Our methodology measuring OM was applied to two samples from reservoirs across UK brings a new direction to our work.
Collaborator Contribution They have contributed in terms of knowledge exchange and samples.
Impact Knowledge exchange across disciplines (hydrology and chemistry). Testing the methodology resulted in preliminary data that allowed us to put together a funding proposal. Further NERC funding was obtained to apply our methods to a large set of samples from the University of Leed's sites and allow further knowledge exchange.
Start Year 2023
 
Description Peated Whisky alternatives 
Organisation Heriot-Watt University
Country United Kingdom 
Sector Academic/University 
PI Contribution Knowledge exchange and methods.
Collaborator Contribution Knowledge exchange and methods.
Impact Collaboration initiated due to my expertise in peat. This is multidisciplinary involving maltsters and distillers plus the SWRI. We have applied our methods to samples of peat used in the industry and gained some preliminary insight. Further funding has now been applied for to take this forward.
Start Year 2022
 
Description Peatland Microbiology and Chemistry under land use change 
Organisation University of Aberdeen
Department School of Biological Sciences Aberdeen
Country United Kingdom 
Sector Academic/University 
PI Contribution This collaboration is in full swing. We have shared study sites to compliment our parallel research goals. We have shared water table data and other measurements.
Collaborator Contribution They will provide an examination of the microbiology on a functional level. They have shared microbial data.
Impact We have seen changes in microbial features which relate to the chemistry across sites. Our collaborators are also seeing a functional change. We are at the stage of bring the data together for publications.
Start Year 2021
 
Description Swedish Peatland site 
Organisation Radboud University Nijmegen
Country Netherlands 
Sector Academic/University 
PI Contribution Provided site specific information and offered to help with lab access. The hope is to initiate sampling 2025.
Collaborator Contribution Knowledge exchange regarding our methodology.
Impact Just initiated.
Start Year 2023
 
Description ENC 2023 conference presentation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presented at the ENC conference 2023 in USA.
Year(s) Of Engagement Activity 2023
 
Description Invited presentation The Flow Country conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact Presented our latest findings at the Flow Country conference in form of a presentation and series of posters.
Year(s) Of Engagement Activity 2023
 
Description Invited to take part in organisation of conference 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was invited to take part in the organisation and creation of a session at the largest geosciences conference (EGU) with 16,000 participants. I was invited due to my international recognition as an expert in the field.
Year(s) Of Engagement Activity 2023
 
Description Invited to take part in organization of conference 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I was part of the local organizing team of the international conference EUROMAR. I was brought on for my expertise and also presented at the conference.
Year(s) Of Engagement Activity 2023
 
Description Programme board membership 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact I am a member of a Forest and Peatland programme and research and teaching working group. This involved providing expertise and discussions with community groups, NGOs, restoration contractors and landowners
Year(s) Of Engagement Activity 2023,2024