The past, present and future of snow algae in Antarctica: a threatened terrestrial ecosystem?

Lead Research Organisation: Scottish Association For Marine Science
Department Name: Dunstaffnage Marine Laboratory

Abstract

In Antarctica, less than 0.2% of the land is ice-free for at least part of the year and so is able to support terrestrial life. As in all habitats, these ecosystems have as their basis the primary producers - that is organisms that photosynthesise by using the sun's energy to capture CO2 from the atmosphere and make sugars. Even so, in the Antarctic Peninsula, only 1.34% of this exposed ground is estimated to be vegetated.
Satellite images can be used to determine vegetated areas on the ground because photosynthetic organisms have distinct colours that can be detected. Perhaps surprisingly, when some of these areas have been inspected directly - in a process called ground-validation - a major group of photosynthetic organisms are snow-algae living on the surface of (or just below) the snow fields. Many species have dormant stages where they make red pigments - this has led to them being mistaken for drops of blood in the snow. As well as the fact that snow algae may be one of the major primary producers, they are also important for cycling nutrients in the habitable terrestrial regions of Antarctica. As the snow melts they are washed off into the surrounding environments providing nutrients to the adjacent land and into the sea. The contribution of snow algae to these ecosystems, both in absolute terms and relative to the area of 'true' terrestrial habitat in the Antarctic, is therefore likely to be considerable.
Recently, we have carried out studies to make the first-ever large-scale area and biomass distribution map of snow algae across the whole of the Antarctic Peninsula. Essentially we have been able to record for the first time the third largest terrestrial photosynthetic ecosystem on the Antarctic Peninsula after mosses and lichens. We detected 1679 green snow algae blooms covering approximately 1.9km2, which overall was estimated to weigh 1327 tonnes and taking up 1757 tonnes of CO2 per year. We found that these blooms were influenced by both temperature and nutrients with 60% of blooms being within 5km of a penguin colony. We also found that 62% of blooms were on small, low-lying islands that, should the Peninsula continue to warm, will lose their summer snow cover along with their snow algae. However, the other larger blooms were found further north on the Peninsula, on sites that would allow the blooms to expand onto higher ground.

Now we have the initial estimates of where and how much snow algae there is in one part of Antarctica it is important that we work out 1: where snow algae are in the rest of Antarctica 2, increase the detection sensitivity of our methods by using drones to detect the red as well as green blooms 3, the range of temperatures, nutrients and light required for the snow algae to bloom 4, how the snow algae compare to other major plants in the region such as lichens and mosses and 5, whether the snow algae species across Antarctica are all the same and what are they made of. We will also look at historical satellite images of Antarctica to see if the blooms are spreading, decreasing or have remained in the same places.

To do this we need to carry out a comprehensive survey of snow algae blooms from detected sites all the way along the Antarctic Peninsula in 2021 and then studying one very large bloom for a whole growth season in 2022. There we will ground-truth the blooms and other vegetation and to carry out a detailed analysis of the nutrients in the snow and the photosynthetic activity of the snow algae and other plants in the area. This will allow us to estimate their overall contribution to the polar carbon budget. Once we have all this information we can make detailed models to predict how the snow algae blooms will change in location, size, biomass and species in the coming years. Overall, this will be a significant advance in our understanding of the Antarctic terrestrial ecosystem.

Planned Impact

This research will build upon the preliminary work and investment by NERC and BAS achieved under a Leverhulme Trust research grant awarded to the UCam and BAS (BEA Team) applicants from 2017 to 2020, in particular allowing us to start to provide a consensus of the findings from the specific Rothera and King George Island study sites studied in detail under that grant and produce an Antarctic Peninsula-scale biomass/distribution map of green snow algae.
The proposed work will provide the first continent-scale analysis of the importance of snow algae as a terrestrial ecosystem in Antarctica. The overall impact of the work will be a significant rethink of how primary productivity is achieved in these regions, establishing the importance of Antarctica's terrestrial biosphere to the global carbon cycle, and estimating how it may respond as Antarctic temperatures and climate change.

This will be relevant for the polar research community directly, but also for the general understanding of physiological and metabolic adaptations to Polar environments, which is central to the international scientific programmes of the Scientific Committee for Antarctic Research (SCAR), including Antarctic Thresholds - Ecosystem Resilience and Adaptation, and State of the Antarctic Ecosystem (AntEco). The information will be disseminated to SCAR since Profs Peck and Convey are leading members of the committees, and Prof Convey is Co-Chair of AntEco.

Scientific findings will contribute to the formulation of SCAR's independent scientific advice to the Antarctic Treaty System, and particularly its Committee for Environmental Protection, in the context of understanding ecosystem resilience to change in the polar regions. Likewise, proposal outcomes will contribute to maintaining the UK's scientific standing in the international Polar research community, thereby supporting our major UK governmental stakeholder the Foreign and Commonwealth Office, and its influential role in the Antarctic Treaty System. Moreover, improved understanding of the metabolic flexibility of polar species will be of use in predicting their responses to environmental stresses, and hence of potential value to NGOs such as the Polar Conservation Organisation and ASOC (the Antarctic and Southern Ocean Coalition), with whom BAS has strong links.

This project also incorporates cutting edge remote sensing tools and technologies into a biological/biogeochemical framework. Snow algae is an optimum uniform and relatively simple ecosystem: an ideal test bed to explore the use of hyperspectral imagery and sensors to map ecological traits and diversity using a spectronomic approach, and to map photosynthesis using solar induced fluorescence. These techniques are at the forefront of using earth observation to understand biological processes on our planet, and will inform algorithms to exploit data from future satellite missions such as the DLR's EnMAP, NASA's HyspIRI and ESA's FLEX.

The research outputs will also be disseminated by outreach activities, helping to highlight to both the general public and policymakers how polar ecosystems are responding to global change, and what this means for preserving the ecosystem services provided by algal communities. Dr Davey, Prof. Smith, Dr Colesie and Dr Gray are already very active in this area with extensive experience of mounting large exhibitions in schools and science fairs, with Dr Davey having held an outreach award from the Royal Society. They will continue to do this, including taking advantage of online media by making video diaries in the field and showcasing the technology and scientific approaches we take. Similarly BAS runs an extensive outreach programme mounting school/community/university outreach visits and exhibitions, and will communicate scientific outputs to a broad cross-section of the general public through press releases
 
Description To date we have successfully completed our first field seaon in the Antarctic since the start of this project. The field work looked at how algal blooms change over a polar season, how it relates to other plants such as mosses and lichens and what are the environmental parameters that might influence where and when the blooms appear. We have lots of new information from the field using ground techniques and latest drone technology. We are now processing these data in 2023 and currently awaiting the samples from Antarctica to arrive in the UK for further analysis. We have likley discovered new species and starting to analyse the whole genomes of these polar species.
Exploitation Route Biotechnology - discovery of new genes and traits for stress tolerance in plants and algae. Maps of blooms for forward projections for effects of climate change in the Antarctic. Influence policy etc in polar regions.
Sectors Environment

Manufacturing

including Industrial Biotechology

 
Description Increased collaboration with INACH Chilean Antarctic Institute during and after the 2023 Antarctic field season.
First Year Of Impact 2023
Sector Environment
Impact Types Cultural

Economic

 
Description COP26
Geographic Reach Multiple continents/international 
Policy Influence Type Contribution to new or Improved professional practice
URL https://www.gla.ac.uk/media/Media_792662_smxx.pdf
 
Description Contribution to Grantham Institute Discussion paper 9
Geographic Reach Multiple continents/international 
Policy Influence Type Contribution to new or Improved professional practice
Impact Focus research areas and strategies for future Antarctic science and policies.
 
Description Algae-UK BBSRC NIBB training fund
Amount £150 (GBP)
Funding ID Algae-UK NIBB training travel grant 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 03/2022 
End 09/2022
 
Description CASP-ICE: Cryospheric Algal Sampling Protocols - International Collaboration and Exchange
Amount £10,000 (GBP)
Funding ID NE/Y002636/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 12/2023 
End 12/2024
 
Description Europlanet Transnational Access Iceland
Amount € 4,000 (EUR)
Funding ID Europlanet Transnational Access Iceland Davey Astro_Ice 
Organisation Europlanet 
Sector Charity/Non Profit
Country France
Start  
End 12/2022
 
Description Faster, greener, and more competitive? How will vegetation alter in a changing Antarctic?
Amount £160,000 (GBP)
Funding ID NE/T00939X/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 08/2021 
End 04/2025
 
Description MASTS-SFC Saltire Emerging Researcher Scheme (MASTS-SERS)
Amount £9,400 (GBP)
Funding ID NordAlg_04199 Alex Thomson 
Organisation Marine Alliance for Science and Technology for Scotland 
Sector Academic/University
Country United Kingdom
Start 03/2022 
End 09/2022
 
Description One Planet Studentship
Amount £0 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 08/2024 
End 09/2028
 
Description SFC Additional Covid fund part 2
Amount £16,200 (GBP)
Funding ID 03632 SFC Part 2 MD 
Organisation University of the Highlands and Islands 
Sector Academic/University
Country United Kingdom
Start  
End 01/2022
 
Description University Innovation Fund Funding for MESE Cluster 2021/22
Amount £7,377 (GBP)
Funding ID University Innovation Fund Funding for MESE Cluster 2021/22 DAVEY SnowBiotic 04060 
Organisation University of the Highlands and Islands 
Sector Academic/University
Country United Kingdom
Start 12/2021 
End 06/2022
 
Title possible new species of polar algae 
Description identified likley new species of polar algae. genome and wider physiology being analysed. 
Type Of Material Biological samples 
Year Produced 2022 
Provided To Others? No  
Impact new information on cryophilic algae - trait analysis and possible novel trait/genes for cold survival 
 
Title Antarctic snow algae/vegetation model 
Description Model to understand the location of snow algae and other vegetation in Antarctica. Work in progress. 
Type Of Material Computer model/algorithm 
Year Produced 2022 
Provided To Others? No  
Impact Gray A, Krolikowski M, Fretwell P, Convey P, Peck LS, Mendelova M, Smith AG and Davey MP (2021) Remote Sensing Phenology of Antarctic Green and Red Snow Algae Using WorldView Satellites. Frontiers in Plant Science. 12: 877 https://www.frontiersin.org/article/10.3389/fpls.2021.671981 
URL https://www.frontiersin.org/article/10.3389/fpls.2021.671981
 
Description CASP-ICE: Cryospheric Algal Sampling Protocols - International Collaboration and Exchange Funder: NERC Environmental sciences: global partnerships scheme (Bristol University), 2023-2024 
Organisation University of Bristol
Country United Kingdom 
Sector Academic/University 
PI Contribution CASP-ICE: Cryospheric Algal Sampling Protocols - International Collaboration and Exchange Funder: NERC Environmental sciences: global partnerships scheme (Bristol University), 2023-2024
Collaborator Contribution CASP-ICE: Cryospheric Algal Sampling Protocols - International Collaboration and Exchange Funder: NERC Environmental sciences: global partnerships scheme (Bristol University), 2023-2024
Impact CASP-ICE: Cryospheric Algal Sampling Protocols - International Collaboration and Exchange First meeting due in April 2024
Start Year 2023
 
Description Dormancy and revivability of cryophilic algae in Icelandic ecosystems 
Organisation Europlanet
Country France 
Sector Charity/Non Profit 
PI Contribution The aim of this scoping project is to assess the dormancy status, revivability and metabolic status of cryophilic algae in Icelandic snow and glacier habitats. The scientific objectives are: 1: to determine whether algal isolates from field cryopreserved samples can be reactivated from their dormant state 2: to determine if there is a positive correlation between revivability and pigment status of the cells 3: to determine the metabolic status of the ice or snow matrix/substrate in which the field samples were isolated from. We will work with Matis and Europlanet to do this who fund all the travel and access. There is no funding for staff or consumables. This will help us to compare the Antarctic samples to those in the Arctic.
Collaborator Contribution Iceland site access and logistics.
Impact non yet due to covid restrictions
Start Year 2021
 
Description Dormancy and revivability of cryophilic algae in Icelandic ecosystems 
Organisation Matís ltd.
Country Iceland 
Sector Charity/Non Profit 
PI Contribution The aim of this scoping project is to assess the dormancy status, revivability and metabolic status of cryophilic algae in Icelandic snow and glacier habitats. The scientific objectives are: 1: to determine whether algal isolates from field cryopreserved samples can be reactivated from their dormant state 2: to determine if there is a positive correlation between revivability and pigment status of the cells 3: to determine the metabolic status of the ice or snow matrix/substrate in which the field samples were isolated from. We will work with Matis and Europlanet to do this who fund all the travel and access. There is no funding for staff or consumables. This will help us to compare the Antarctic samples to those in the Arctic.
Collaborator Contribution Iceland site access and logistics.
Impact non yet due to covid restrictions
Start Year 2021
 
Description INACH Chilean Antarctic Institute 
Organisation Chilean Antarctic Institute
Country Chile 
Sector Charity/Non Profit 
PI Contribution INACH hosted our research team in Antarctica. A joint BAS-INACH agreement meant that we were able to carry out our research in Antarctica by being largely based in the INACH summer research camp for 2 months. They hosted us 5 project staff and they also had on base 2 INACH staff to help support the season whilst on the base.
Collaborator Contribution Provision of access to and support within the INACH Antarctic base at Robert Island and at King George Island. This was for accomodation, transport, water and power supply. Help with accomodation whilst waiting for gateway access out of Antarctica.
Impact Potential new areas of international science and collaboration between INACH and BAS, SAMS, Cambridge and Edinburgh. Increased project awareness in South America and support. BAS support to INACH during this project by helping with logistics and transport for our whole team.
Start Year 2022
 
Description RESEARCH RE-BOOT - enhancing data and funding outputs after CoViD-19 delays 
Organisation Scottish Association For Marine Science
Country United Kingdom 
Sector Academic/University 
PI Contribution Task 1 - Single cell sorting and sequencing: 24 field samples, taken from red, orange, and green snow algae blooms in Antarctica in 2015 and 2018, were sent to the Exeter University Centre for Cytomics for single cell sorting and isolation payed for through the Covid-19 project budget. Naomi Thomson and Dr Alex Thomson carried out the sorting at SAMS under the guidance of Dr Davey. Dr Thomson visiting the Exeter site to oversee the sorting. Field samples were first inspected and photographed under microscope. Samples were then sorted using a Bigfoot flow cytometry system, and individual cells isolated on 96-well plates for downstream imaging and sequencing. An initial batch of 6 samples (2 x 96-well plate each) were successfully sorted using the flow cytometer, with an average single-cell well occupancy success rate of 61%. The sorted plates will now undergo imaging and single-cell barcode sequencing at SAMS to develop an image-sequence catalogue of snow algal species from the mixed community samples. This will be followed by the second batch of 18 field samples. The cell sorting of field collected samples was a largely new area for the cell-sorting team (who largely sort pure cultures of bacteria etc), this meant that new techniques had to be developed and optimised by our and their team, which although delayed the data acquisition has meant we have increased confidence in this new technique for sorting mixed field samples. Task 2 - Nanopore community metabarcoding: The same 24 field samples will also be prepared for community metabarcoding using an Oxford Nanopore Minion Mk1C purchased through the Covid-19 project budget. Mixed field samples will undergo community DNA extraction, followed by library preparation, and sequencing on the Minion Mk1C. The metabarcoding data produced will allow the characterisation of species diversity and composition within snow algal bloom communities and will enrich and complement the single cell sequencing approach.
Collaborator Contribution Dr Thomson visiting the Exeter site to oversee the sorting. Field samples were first inspected and photographed under microscope. Samples were then sorted using a Bigfoot flow cytometry system, and individual cells isolated on 96-well plates for downstream imaging and sequencing.
Impact Single cell sorting of mixed Antarctic snow algal samples was trialled and optimised by the University of Exeter Cytomics team and SAMS post-doc Alex Thomson. A total of 6 field samples (equating to 12 x 96-well plates) were successfully sorted into single-cell occupancy wells for downstream imaging and barcode-sequencing. Microscope images from the single-cell sorting process were also used in outreach posters for the project at the Glasgow COP26 Cryosphere Pavilion. An Oxford Nanopore Minion Mk1C was successfully acquired for the project and has been set up to allow in-house community sequencing of the field samples at SAMS. The single cell sequencing and Nanopore investigations will generate a detailed catalogue of species composition in Antarctic snow algae communities which might be used for identification of algal cells in field samples in the future. The results will also inform the question of whether green and red cells represent different species, or the same species under different environmental conditions or life-stages. The results will be published in a scientific journal, and the methods developed during the flow cytometry investigation will contribute towards methods for understanding mixed communities in microbial research. The Minion Mk1C will represent the first in-house sequencing capability at SAMS and will enable wider sequencing investigations both in the laboratory and in the field.
Start Year 2021
 
Description RESEARCH RE-BOOT - enhancing data and funding outputs after CoViD-19 delays 
Organisation University of Exeter
Country United Kingdom 
Sector Academic/University 
PI Contribution Task 1 - Single cell sorting and sequencing: 24 field samples, taken from red, orange, and green snow algae blooms in Antarctica in 2015 and 2018, were sent to the Exeter University Centre for Cytomics for single cell sorting and isolation payed for through the Covid-19 project budget. Naomi Thomson and Dr Alex Thomson carried out the sorting at SAMS under the guidance of Dr Davey. Dr Thomson visiting the Exeter site to oversee the sorting. Field samples were first inspected and photographed under microscope. Samples were then sorted using a Bigfoot flow cytometry system, and individual cells isolated on 96-well plates for downstream imaging and sequencing. An initial batch of 6 samples (2 x 96-well plate each) were successfully sorted using the flow cytometer, with an average single-cell well occupancy success rate of 61%. The sorted plates will now undergo imaging and single-cell barcode sequencing at SAMS to develop an image-sequence catalogue of snow algal species from the mixed community samples. This will be followed by the second batch of 18 field samples. The cell sorting of field collected samples was a largely new area for the cell-sorting team (who largely sort pure cultures of bacteria etc), this meant that new techniques had to be developed and optimised by our and their team, which although delayed the data acquisition has meant we have increased confidence in this new technique for sorting mixed field samples. Task 2 - Nanopore community metabarcoding: The same 24 field samples will also be prepared for community metabarcoding using an Oxford Nanopore Minion Mk1C purchased through the Covid-19 project budget. Mixed field samples will undergo community DNA extraction, followed by library preparation, and sequencing on the Minion Mk1C. The metabarcoding data produced will allow the characterisation of species diversity and composition within snow algal bloom communities and will enrich and complement the single cell sequencing approach.
Collaborator Contribution Dr Thomson visiting the Exeter site to oversee the sorting. Field samples were first inspected and photographed under microscope. Samples were then sorted using a Bigfoot flow cytometry system, and individual cells isolated on 96-well plates for downstream imaging and sequencing.
Impact Single cell sorting of mixed Antarctic snow algal samples was trialled and optimised by the University of Exeter Cytomics team and SAMS post-doc Alex Thomson. A total of 6 field samples (equating to 12 x 96-well plates) were successfully sorted into single-cell occupancy wells for downstream imaging and barcode-sequencing. Microscope images from the single-cell sorting process were also used in outreach posters for the project at the Glasgow COP26 Cryosphere Pavilion. An Oxford Nanopore Minion Mk1C was successfully acquired for the project and has been set up to allow in-house community sequencing of the field samples at SAMS. The single cell sequencing and Nanopore investigations will generate a detailed catalogue of species composition in Antarctic snow algae communities which might be used for identification of algal cells in field samples in the future. The results will also inform the question of whether green and red cells represent different species, or the same species under different environmental conditions or life-stages. The results will be published in a scientific journal, and the methods developed during the flow cytometry investigation will contribute towards methods for understanding mixed communities in microbial research. The Minion Mk1C will represent the first in-house sequencing capability at SAMS and will enable wider sequencing investigations both in the laboratory and in the field.
Start Year 2021
 
Description Research and networking exchange with Nord University: enhancing genomics and metabolomics capabilities for cryophilic algae 
Organisation Fraunhofer Institute for Cell Therapy and Immunology
Country Germany 
Sector Public 
PI Contribution Cryophilic microalgae represent key ecological contributors in their environments, as well as a valuable source of bioprospecting and biotechnological resources. Genomic resources, such as whole genome assemblies and annotations, are integral to understanding the ecology of these organisms, as well as in harnessing derived biotechnological applications. This is a MASTS-SFC Saltire Emerging Researcher Scheme (MASTS-SERS) award for our project PDRA Dr Alex Thomson. MASTS in association with the Scottish Funding Council is supporting the Saltire Emerging Researcher Scheme. The scheme represents an important and exciting opportunity for Post Graduate Researchers (PGR) and Early Career Researchers (ECR) to engage in substantive collaboration with colleagues from Europe (EA, EEA and EFTA countries). Dr. Alex Thomson will visit the Hulatt group at Nord University for a two-week research stay to learn from the group's experience of whole genome assembly in algae. This will directly support the assembly and annotation of two sequenced strains of snow alga isolated from Antarctic field samples in 2018 by Dr. Matthew Davey. The exchange would also facilitate further comparative analyses of cryophilic algal genomes, offering insights into evolutionary relationships between cold-tolerant algal species, as well as feeding into the development of algal biotechnological resources. The return exchange will involve a research student from the Hulatt group, Alexandre Dètain, visiting SAMS - UHI for a period of two weeks in order to learn about, and gain access to, SAMS - UHI's capabilities in algal culturing, metabolomic analysis and Nanopore sequencing. This work will contribute to the wider understanding and mapping of functional pathways of lipid production for aquaculture in the strains undergoing genome annotation. In addition, Dr. Alex Thomson would seek to visit the CCCryo Culture of Cryophilic Algae in Potsdam, Germany for a one-week stay. In 2021, Dr. Matthew Davey received funding for the whole genome sequencing of two Antarctic alga strains from NERC NEOF. To facilitate the assembly of the genomes, our group aims to organise a two-week study exchange with Dr. Chistopher Hulatt's group in Nord University, Arctic Norway. In addition, a visit to Dr. Thomas Leya at the CCCryo, Fraunhoffer Institute IZI-BB, Potsdam, Germany, will be organised to allow the comparison and taxonomic identification of one of the algal isolates undergoing whole genome sequencing and assembly.
Collaborator Contribution The Hulatt group have a wide experience in microalgal genomics and have recently presented the genome of one of the first Haptophyte species, Diacronema lutheri. The exchange would represent a valuable opportunity to learn from the Hulatt group's experience of genome assembly and annotation, as well as an opportunity to explore comparative analyses of cryophilic algal genomes. A return exchange, involving one of the Hulatt group's research students, Alexandre Dètain, would also be organised, offering access to the state-of-art algal culturing, metabolomic, and nanopore sequencing capabilities at SAMS - UHI. Dr. Leya is a world leading expert on the taxonomy and culturing of cryophilic algae. The exchange would allow the inspection and comparison of the strain against their collection and it's possible description as a novel species. This work will contribute to an in-preparation publication on species diversity within Antarctic algal isolates sampled in 2018 by Dr. Davey. The three-way exchange would represent the first step in the development of future collaborations and joint-funding applications with the Hulatt group and Dr. Leya.
Impact Cultures from the Fraunhofer group have already arrived to us at SAMS. Dr Alex Thomson has engaged with the MASTS ECR team events. Exchange outcomes: 1) publication of 2 genome assemblies; 2) publication of a comparative whole genome study; 3) publication of the isolate charectarisation study and a possible novel species group; 4) publication of 1 or 2 papers based on Alexandre's PhD metabolomic work undertaken at SAMS - UHI; 5) 1 ecological or fundamental biology joint proposal; 6) 1 or 2 applied aquaculture and/or biotech joint proposals; 7) outreach through seminars, teaching, and media (Twitter, infographic production, media articles).
Start Year 2022
 
Description Research and networking exchange with Nord University: enhancing genomics and metabolomics capabilities for cryophilic algae 
Organisation Marine Alliance for Science and Technology for Scotland
Country United Kingdom 
Sector Academic/University 
PI Contribution Cryophilic microalgae represent key ecological contributors in their environments, as well as a valuable source of bioprospecting and biotechnological resources. Genomic resources, such as whole genome assemblies and annotations, are integral to understanding the ecology of these organisms, as well as in harnessing derived biotechnological applications. This is a MASTS-SFC Saltire Emerging Researcher Scheme (MASTS-SERS) award for our project PDRA Dr Alex Thomson. MASTS in association with the Scottish Funding Council is supporting the Saltire Emerging Researcher Scheme. The scheme represents an important and exciting opportunity for Post Graduate Researchers (PGR) and Early Career Researchers (ECR) to engage in substantive collaboration with colleagues from Europe (EA, EEA and EFTA countries). Dr. Alex Thomson will visit the Hulatt group at Nord University for a two-week research stay to learn from the group's experience of whole genome assembly in algae. This will directly support the assembly and annotation of two sequenced strains of snow alga isolated from Antarctic field samples in 2018 by Dr. Matthew Davey. The exchange would also facilitate further comparative analyses of cryophilic algal genomes, offering insights into evolutionary relationships between cold-tolerant algal species, as well as feeding into the development of algal biotechnological resources. The return exchange will involve a research student from the Hulatt group, Alexandre Dètain, visiting SAMS - UHI for a period of two weeks in order to learn about, and gain access to, SAMS - UHI's capabilities in algal culturing, metabolomic analysis and Nanopore sequencing. This work will contribute to the wider understanding and mapping of functional pathways of lipid production for aquaculture in the strains undergoing genome annotation. In addition, Dr. Alex Thomson would seek to visit the CCCryo Culture of Cryophilic Algae in Potsdam, Germany for a one-week stay. In 2021, Dr. Matthew Davey received funding for the whole genome sequencing of two Antarctic alga strains from NERC NEOF. To facilitate the assembly of the genomes, our group aims to organise a two-week study exchange with Dr. Chistopher Hulatt's group in Nord University, Arctic Norway. In addition, a visit to Dr. Thomas Leya at the CCCryo, Fraunhoffer Institute IZI-BB, Potsdam, Germany, will be organised to allow the comparison and taxonomic identification of one of the algal isolates undergoing whole genome sequencing and assembly.
Collaborator Contribution The Hulatt group have a wide experience in microalgal genomics and have recently presented the genome of one of the first Haptophyte species, Diacronema lutheri. The exchange would represent a valuable opportunity to learn from the Hulatt group's experience of genome assembly and annotation, as well as an opportunity to explore comparative analyses of cryophilic algal genomes. A return exchange, involving one of the Hulatt group's research students, Alexandre Dètain, would also be organised, offering access to the state-of-art algal culturing, metabolomic, and nanopore sequencing capabilities at SAMS - UHI. Dr. Leya is a world leading expert on the taxonomy and culturing of cryophilic algae. The exchange would allow the inspection and comparison of the strain against their collection and it's possible description as a novel species. This work will contribute to an in-preparation publication on species diversity within Antarctic algal isolates sampled in 2018 by Dr. Davey. The three-way exchange would represent the first step in the development of future collaborations and joint-funding applications with the Hulatt group and Dr. Leya.
Impact Cultures from the Fraunhofer group have already arrived to us at SAMS. Dr Alex Thomson has engaged with the MASTS ECR team events. Exchange outcomes: 1) publication of 2 genome assemblies; 2) publication of a comparative whole genome study; 3) publication of the isolate charectarisation study and a possible novel species group; 4) publication of 1 or 2 papers based on Alexandre's PhD metabolomic work undertaken at SAMS - UHI; 5) 1 ecological or fundamental biology joint proposal; 6) 1 or 2 applied aquaculture and/or biotech joint proposals; 7) outreach through seminars, teaching, and media (Twitter, infographic production, media articles).
Start Year 2022
 
Description Research and networking exchange with Nord University: enhancing genomics and metabolomics capabilities for cryophilic algae 
Organisation Nord University
Country Norway 
Sector Academic/University 
PI Contribution Cryophilic microalgae represent key ecological contributors in their environments, as well as a valuable source of bioprospecting and biotechnological resources. Genomic resources, such as whole genome assemblies and annotations, are integral to understanding the ecology of these organisms, as well as in harnessing derived biotechnological applications. This is a MASTS-SFC Saltire Emerging Researcher Scheme (MASTS-SERS) award for our project PDRA Dr Alex Thomson. MASTS in association with the Scottish Funding Council is supporting the Saltire Emerging Researcher Scheme. The scheme represents an important and exciting opportunity for Post Graduate Researchers (PGR) and Early Career Researchers (ECR) to engage in substantive collaboration with colleagues from Europe (EA, EEA and EFTA countries). Dr. Alex Thomson will visit the Hulatt group at Nord University for a two-week research stay to learn from the group's experience of whole genome assembly in algae. This will directly support the assembly and annotation of two sequenced strains of snow alga isolated from Antarctic field samples in 2018 by Dr. Matthew Davey. The exchange would also facilitate further comparative analyses of cryophilic algal genomes, offering insights into evolutionary relationships between cold-tolerant algal species, as well as feeding into the development of algal biotechnological resources. The return exchange will involve a research student from the Hulatt group, Alexandre Dètain, visiting SAMS - UHI for a period of two weeks in order to learn about, and gain access to, SAMS - UHI's capabilities in algal culturing, metabolomic analysis and Nanopore sequencing. This work will contribute to the wider understanding and mapping of functional pathways of lipid production for aquaculture in the strains undergoing genome annotation. In addition, Dr. Alex Thomson would seek to visit the CCCryo Culture of Cryophilic Algae in Potsdam, Germany for a one-week stay. In 2021, Dr. Matthew Davey received funding for the whole genome sequencing of two Antarctic alga strains from NERC NEOF. To facilitate the assembly of the genomes, our group aims to organise a two-week study exchange with Dr. Chistopher Hulatt's group in Nord University, Arctic Norway. In addition, a visit to Dr. Thomas Leya at the CCCryo, Fraunhoffer Institute IZI-BB, Potsdam, Germany, will be organised to allow the comparison and taxonomic identification of one of the algal isolates undergoing whole genome sequencing and assembly.
Collaborator Contribution The Hulatt group have a wide experience in microalgal genomics and have recently presented the genome of one of the first Haptophyte species, Diacronema lutheri. The exchange would represent a valuable opportunity to learn from the Hulatt group's experience of genome assembly and annotation, as well as an opportunity to explore comparative analyses of cryophilic algal genomes. A return exchange, involving one of the Hulatt group's research students, Alexandre Dètain, would also be organised, offering access to the state-of-art algal culturing, metabolomic, and nanopore sequencing capabilities at SAMS - UHI. Dr. Leya is a world leading expert on the taxonomy and culturing of cryophilic algae. The exchange would allow the inspection and comparison of the strain against their collection and it's possible description as a novel species. This work will contribute to an in-preparation publication on species diversity within Antarctic algal isolates sampled in 2018 by Dr. Davey. The three-way exchange would represent the first step in the development of future collaborations and joint-funding applications with the Hulatt group and Dr. Leya.
Impact Cultures from the Fraunhofer group have already arrived to us at SAMS. Dr Alex Thomson has engaged with the MASTS ECR team events. Exchange outcomes: 1) publication of 2 genome assemblies; 2) publication of a comparative whole genome study; 3) publication of the isolate charectarisation study and a possible novel species group; 4) publication of 1 or 2 papers based on Alexandre's PhD metabolomic work undertaken at SAMS - UHI; 5) 1 ecological or fundamental biology joint proposal; 6) 1 or 2 applied aquaculture and/or biotech joint proposals; 7) outreach through seminars, teaching, and media (Twitter, infographic production, media articles).
Start Year 2022
 
Description SnowBiotic - Screening Cryophilic Snow Algae for Antimicrobial Compounds 
Organisation University of Strathclyde
Country United Kingdom 
Sector Academic/University 
PI Contribution This short study will test whether intracellular and/or extracellular metabolites extracted from snow algae collected (field samples and lab isolates) exhibit microbial activity. The algal samples are currently at SAMS (part of Dr Davey's research on these organisms and their ecology, physiology, distribution, and partly linked to his new NERC standard grant) https://www.sams.ac.uk/people/researchers/davey-dr-matthew/ . The metabolite extraction will take place at SAMS by the Davey group. This is funded by the UHI SFC University Innovation Fund Funding for MESE Cluster 2021/22 .
Collaborator Contribution The extracts (along with negative solvent only controls) will be sent to Dr Katherine Duncan at the University of Strathclyde where the ESKAPE group of AMR pathogens of global interest (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species) will be exposed to the extracts. https://journals.asm.org/doi/10.1128/CMR.00181-19. This assay will show whether the growth of the pathogens is affected or not by the presence of the extracts (control extracts etc will be used).
Impact Assay development in progress. The research cluster fund aims to: 1. Fund small scale research projects, which meet one or more of the UIF outcomes (see appendix 1); 2. Gather evidence of impact related to existing research projects in preparation for future REF case studies; 3. Encourage projects that involve collaboration across the UHI partnership;
Start Year 2021
 
Description SnowBiotic - Screening Cryophilic Snow Algae for Antimicrobial Compounds 
Organisation University of the Highlands and Islands
Country United Kingdom 
Sector Academic/University 
PI Contribution This short study will test whether intracellular and/or extracellular metabolites extracted from snow algae collected (field samples and lab isolates) exhibit microbial activity. The algal samples are currently at SAMS (part of Dr Davey's research on these organisms and their ecology, physiology, distribution, and partly linked to his new NERC standard grant) https://www.sams.ac.uk/people/researchers/davey-dr-matthew/ . The metabolite extraction will take place at SAMS by the Davey group. This is funded by the UHI SFC University Innovation Fund Funding for MESE Cluster 2021/22 .
Collaborator Contribution The extracts (along with negative solvent only controls) will be sent to Dr Katherine Duncan at the University of Strathclyde where the ESKAPE group of AMR pathogens of global interest (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacter species) will be exposed to the extracts. https://journals.asm.org/doi/10.1128/CMR.00181-19. This assay will show whether the growth of the pathogens is affected or not by the presence of the extracts (control extracts etc will be used).
Impact Assay development in progress. The research cluster fund aims to: 1. Fund small scale research projects, which meet one or more of the UIF outcomes (see appendix 1); 2. Gather evidence of impact related to existing research projects in preparation for future REF case studies; 3. Encourage projects that involve collaboration across the UHI partnership;
Start Year 2021
 
Description 2023: Newcastle University Marine Biology Seminar series 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Undergraduate students
Results and Impact 2023: Newcastle University Marine Biology Seminar series
Year(s) Of Engagement Activity 2023
 
Description 2023: EU EnhanceMicroAlgae Conference. Manchester University 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Industry/Business
Results and Impact talk to the secotr about algal biotech
Year(s) Of Engagement Activity 2023
 
Description 2023: Scientific Committee of Antarctic Research (SCAR) Biology congress - New Zealand (presentation given by A. Thomson my PDRA as I was unable to attend) 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact 2023: Scientific Committee of Antarctic Research (SCAR) Biology congress - New Zealand (presentation given by A. Thomson my PDRA as I was unable to attend)
Year(s) Of Engagement Activity 2023
 
Description 2023: UKRI NERC Advanced Training course in Multi-Omics. Keynote Speaker. Liverpool University 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact NERC omics training
Year(s) Of Engagement Activity 2023
 
Description A Talk at the annual Snow Algal Meet international conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact A presentation of remote sensing work carried out as part of grant at a meeting of researchers studying snow algae
Year(s) Of Engagement Activity 2021
 
Description COP26 UK Universities' Climate Innovation Showcase 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact This is a sample of the innovative work going on at universities in the UK, showcasing the creativity and endeavour of researchers to develop new ways to reduce greenhouse emissions, adapt life to the changing climate, help us to better understand the nature of the climate and its impacts, and inform action.

The showcase, which comprises an exhibition of climate-related research, as well as a series of events, has been curated by the COP26 Universities Network, an informal association of academics in the UK active on subjects related to climate change, who wanted to work together in support of the aims of the 26th UNFCCC Conference of the Parties, i.e. COP26.
Year(s) Of Engagement Activity 2021
URL https://www.strath.ac.uk/workwithus/cop26/innovationshowcase/
 
Description Chilean Antarctic Institute INACH 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact On field work in Antarctica our research party was interviewed by INACH communications teams about our research and collaboration with INACH. The material will be made to increase promotion of international science.
Year(s) Of Engagement Activity 2023
 
Description Development of project website and logo ecosnow 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact https://snowalgae.org/ new project website and logo launched
Year(s) Of Engagement Activity 2021,2022
URL https://snowalgae.org/
 
Description Edinburgh: Global Change Seminar 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Postgraduate students
Results and Impact Seminar delivered on using field spectroscopy to build models to detect ecology in remote locations. Scaling between ground and satellite observations.
Year(s) Of Engagement Activity 2021
 
Description Interdisciplinary course in algal-inspired design 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Postgraduate students
Results and Impact LA designed and delivered a lecture series, microalgal workshops and project reviews for a Masters program at Central St Martins. Students engaged with opportunities to develop more sustainable artefacts and were keen to showcase importance of considering sustainability in future art
Year(s) Of Engagement Activity 2022
URL https://www.arts.ac.uk/subjects/textiles-and-materials/postgraduate/ma-biodesign-csm
 
Description International Press Article 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Spanish magazine article on snow algae
Year(s) Of Engagement Activity 2021
 
Description Interview for comment in New Scientist magazine, polar plants 
Form Of Engagement Activity A press release, press conference or response to a media enquiry/interview
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact Flower growth in Antarctica is accelerating due to warming climate. Matthew Davey at the Scottish Association for Marine Science in Oban, UK, agrees that "accelerated expansion is now clearly evident in the region". "This research gives us the first comprehensive data set showing how fast and how dense the plant community may expand," he says.
Year(s) Of Engagement Activity 2022
URL https://www.newscientist.com/article/2308214-flower-growth-in-antarctica-is-accelerating-due-to-warm...
 
Description Open talk on RSS SDA ship 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact Presentation on the SDA ship in Antarctic to all crew and science members on the ship. This gave us a chance to present why we were working in Antarctica and what was the reason for working in that region/island.
Year(s) Of Engagement Activity 2022
 
Description Participation at the Climate Science showcase at Dynamic Earth in Edinburgh 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Meeting with scientists who are at the forefront of research into our changing climate and its effects on the planet. Teams from over 15 organisations (such as Marine Scotland, Heriot Watt University, the University of Edinburgh and the University of Glasgow) were present and explained the climate crisis, and answered anything questions also about COP26 and why this global event was so crucial for the future of our planet.
Year(s) Of Engagement Activity 2021
URL https://www.dynamicearth.co.uk/learning/blog/posts/2021/october/climate-science-showcase-6th-novembe...
 
Description Presentation at the UK Antarctic Science Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact Verbal presentation on the remote sensing work carried out on the grant so far.
Year(s) Of Engagement Activity 2021
 
Description School phone calls from Antarctica 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact Dr Davey spoke to four UK primary schools whilst in field work in Antarctica in 2023. These were 30-45 minute calls via satellite phone to the schools. He gave a chat on what he was doing there, life on base and the science/animals and plants he is working on/seeing. He then answered questions from the pupils about Antarctica. He also sent to the schools beforehand project patches and info from BAS such as leaflets and bookmarks. Number of pupils engaged with were 30-100 per session.
Year(s) Of Engagement Activity 2022,2023
 
Description Session chair at the UK Antarctic Science conference 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact Session chaired at the UK Antarctic Science Conference: talks on remote sensing and vegetation in Antarctica
Year(s) Of Engagement Activity 2021
 
Description Snow Algae Meeting 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Snow Algae Meeting conference in Prague. Presented research on snow algae and current plans for Antarctic field work.
Year(s) Of Engagement Activity 2022
 
Description Society talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact Talk to the University of Derby Geological Society online.
Year(s) Of Engagement Activity 2022
 
Description Society talk 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Undergraduate students
Results and Impact University of Derby's Geological Society - invitation via an colleague who is now a school teacher. online talk about Antarctic snow algae and expeditions.
Year(s) Of Engagement Activity 2022
 
Description UK Polar Science Conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presented our research at the UK Polar Science Conference at Edinburgh University.
Year(s) Of Engagement Activity 2022
 
Description UKRI NERC instagram 
Form Of Engagement Activity Engagement focused website, blog or social media channel
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact UKRI media contact request about our research:

I'm getting in touch from UKRI as we'd love to feature your recent green snow algae research on our Instagram channel. If you'd be happy for us to feature the project, please could you share any of the imagery from this video, and relevant permissions/credits?

We'd also be appreciative if you could cast your eye over the draft copy to make sure it's 100% accurate. For reference, our Instagram is aimed at an educated (but not specialist) 18-34 year old audience. I.e. they know what photosynthesis and climate change is, but do not know the role of green snow algae in it.

Draft copy:

No, somebody didn't pee in the snow. This is green snow algae in the Antarctic Peninsula. First described during Antarctic expeditions in the 1950s and 1960s, blooms of snow algae play a key role in carbon cycling by capturing carbon dioxide from the atmosphere through photosynthesis.

Using imagery from @ESA's Sentinel 2 imagery, scientists from @cambridgeuniversity have estimated that there are over 1600 snow algae blooms appearing annually in the region. Their appearance is thought to be influenced by summer temperatures higher than zero degrees Celcius, as well as the nutrients in the nearby sea. The algae also seem to enjoy living in close proximity to our favourite flightless bird, with 60% of the algal blooms located less than 5km from a penguin colony.

With global temperatures increasing and algae flourishing in warmer temperatures, climate change has the potential to reduce the amount of ice on Antarctica and turn it green with algae.
The study is crucial to revealing the complex connections between species in this environment, helping to build understanding of our planet and protect the precious ecosystems that keep us all alive.


I look forward to hearing from you and congrats on the Nature publication!

Best,

Tori
Year(s) Of Engagement Activity 2021
URL https://www.instagram.com/p/CNChuxaD1tA/