Hazard Identification Platform to Assess the Health Impacts from Indoor and Outdoor Air Pollutant Exposures, through Mechanistic Toxicology
Lead Research Organisation:
University of Edinburgh
Department Name: MRC Human Genetics Unit
Abstract
The focus on particulate matter (PM2.5) mass reductions in UK air quality policy reflects the metrics measured for regulatory compliance. Epidemiological approaches have struggled to untangle the relative hazard of PM constituents within this mass, as well as co-pollutant gases, such as NO2, leading to the contention that all PM2.5 components must be treated as being equally harmful to human health. This makes little toxicological sense. The lack of a relative hazard ranking of PM constituents and co-emitted gases means that policy focuses on blunt strategies based on overall reductions in pollutant concentrations, rather than a refined focus on health relevant sources and components. This poses risks of unintended consequences, e.g. focusing on the largest contributors to PM2.5 for regulatory compliance, rather than the most harmful fractions, may fail to deliver predicted health benefits to the most vulnerable members of our society. In outdoor air this has remained unresolved for over 20-years, but further complexity is introduced by the heterogeneous indoor environment which must be considered in a complete picture of exposure. To address this major knowledge gap, the UK requires integration and focus of toxicological resource methodologies to identify the most hazardous fractions of indoor and outdoor PM and to elucidate the causal pathways contributing to disease development and exacerbation.
Our proposed consortium brings together recognised UK expertise in atmospheric sciences, toxicology and biomedical sciences in a world-leading interdisciplinary collaboration to build an Air Pollution Hazard Identification Platform. This platform will deliver the capability to conduct controlled and characterised exposures to defined pollutant mixtures from different sources for in vitro, in vivo animal and human toxicological studies. We will use the large atmospheric simulation chamber at the University of Manchester to conduct experiments exposing human volunteers to diesel exhaust, woodsmoke, cooking emissions, secondary organic aerosol and NOx-enhanced mixtures, all at ambient atmospheric levels. These have been selected for their recognised substantial contributions to indoor and outdoor air pollution. The chamber exposures will be used as a reference and these experiments will be used to provide filtered samples of the PM for in vitro and transgenic animal exposures at the partner Institutions. Referenceable portable source units for all primary and secondary pollutant mixtures will be developed, characterised and deployed for in vitro and animal exposures to the full gas and particle mixture.
Within the proposal, we will demonstrate the capability of the platform to elucidate the toxicological mechanisms involved in the neurological impacts of air pollution, though any health outcomes are accessible to the platform. The in vitro studies will be used to explore possible direct and indirect mechanisms for neuroinflammation and injury, identifying the molecular pathways associated with cellular activation. Using a unique panel of transgenic stress-reporter mouse lines, the stress response on exposure to the various pollutants will be tracked in a tissue and cell specific manner in vivo and provide a hazard ranking of the pollutants that can be related back to the in vitro molecular signatures. Repeat experiments with mouse lines susceptible to Alzheimer's disease will examine changes in these stress responses. Epigenetic DNA signatures will be examined in target tissues. A panel of healthy aged human subjects with a family history of increased dementia risk will provide biosamples and be subjected to cognitive tests on exposure to the different mixtures, further enabling their hazard ranking for correlation with the in vitro and animal studies. The mechanistic linkages between the animal and human exposure responses will be explored using candidate driven biomarker and untargeted metabolomic and epigenetic studies.
Our proposed consortium brings together recognised UK expertise in atmospheric sciences, toxicology and biomedical sciences in a world-leading interdisciplinary collaboration to build an Air Pollution Hazard Identification Platform. This platform will deliver the capability to conduct controlled and characterised exposures to defined pollutant mixtures from different sources for in vitro, in vivo animal and human toxicological studies. We will use the large atmospheric simulation chamber at the University of Manchester to conduct experiments exposing human volunteers to diesel exhaust, woodsmoke, cooking emissions, secondary organic aerosol and NOx-enhanced mixtures, all at ambient atmospheric levels. These have been selected for their recognised substantial contributions to indoor and outdoor air pollution. The chamber exposures will be used as a reference and these experiments will be used to provide filtered samples of the PM for in vitro and transgenic animal exposures at the partner Institutions. Referenceable portable source units for all primary and secondary pollutant mixtures will be developed, characterised and deployed for in vitro and animal exposures to the full gas and particle mixture.
Within the proposal, we will demonstrate the capability of the platform to elucidate the toxicological mechanisms involved in the neurological impacts of air pollution, though any health outcomes are accessible to the platform. The in vitro studies will be used to explore possible direct and indirect mechanisms for neuroinflammation and injury, identifying the molecular pathways associated with cellular activation. Using a unique panel of transgenic stress-reporter mouse lines, the stress response on exposure to the various pollutants will be tracked in a tissue and cell specific manner in vivo and provide a hazard ranking of the pollutants that can be related back to the in vitro molecular signatures. Repeat experiments with mouse lines susceptible to Alzheimer's disease will examine changes in these stress responses. Epigenetic DNA signatures will be examined in target tissues. A panel of healthy aged human subjects with a family history of increased dementia risk will provide biosamples and be subjected to cognitive tests on exposure to the different mixtures, further enabling their hazard ranking for correlation with the in vitro and animal studies. The mechanistic linkages between the animal and human exposure responses will be explored using candidate driven biomarker and untargeted metabolomic and epigenetic studies.
Publications
Henderson CJ
(2025)
The potent human CAR activator CITCO is a non-genotoxic hepatic tumour-promoting agent in humanised constitutive androstane receptor mice but not in wild-type animals.
in Archives of toxicology
Meehan RR
(2024)
Rett syndrome: interferon-? to the rescue?
in EMBO molecular medicine
| Description | EPSRC Cross-College DTP Healthcare Studentship |
| Amount | £85,000 (GBP) |
| Organisation | Engineering and Physical Sciences Research Council (EPSRC) |
| Sector | Public |
| Country | United Kingdom |
| Start | 09/2023 |
| End | 04/2027 |
| Description | KAU PhD Scholarship |
| Amount | £140,000 (GBP) |
| Organisation | Embassy of Saudi Arabia, London |
| Sector | Public |
| Country | United Kingdom |
| Start | 09/2021 |
| End | 09/2024 |
| Description | Epigenetic profiling in control and air pollution exposed animal models |
| Organisation | University of Manchester |
| Department | Centre for Atmospheric Science |
| Country | United Kingdom |
| Sector | Academic/University |
| PI Contribution | With Professor Gordon McFiggans at Manchester, we collaborated with Finish colleagues (Professor Katja Kanninen) via the ATMO-ACCESS funded partnership, which provided physical, remote and virtual access to state-of-the-art facilities for testing the consequences of defined air pollution exposures in animal models https://www.atmo-access.eu/project/default-template/ |
| Collaborator Contribution | The collaborators provided facilities and assistance for animal air pollution exposure experiments at the University of Eastern Finland. We subsequently generated transcriptomic and DNA methylation profiling datasets from various tissues from control and exposed animals. We are currently completing the bioinformatic analysis of the data with a view to identifying pathways that are activated in different tissue types as a result of air-pollution exposure. |
| Impact | Epigenetic and expression profiling in control and air pollution exposed animal models - analysis ongoing. |
| Start Year | 2023 |
| Description | 'DNA methylation as a marker of environmental exposure' - EpIC EpiGene3Sys Conference |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | Dr Sari Pennings presented as an invited Speaker at the EpIC EpiGene3Sys Conference 10/2022, Granada, Spain. The use of mouse infinitum arrays in model systems for pollution/xenobiotic experience was described and methodology for bioinformatic analysis of the data presented with the aim of identifying biological pathways involved and identifying potential biomarkers. |
| Year(s) Of Engagement Activity | 2022 |
| URL | https://www.sfb1064.med.uni-muenchen.de/events/events/epigene3sys-inc-spain-2022/index.html |
| Description | Applications of epigenetic analysis in animal models of environmental exposure - Scottish Toxicology Meeting 2022 |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | Dr Sari Pennings was an invited Speaker at the Scottish Toxicology Interest Group Meeting 10/2022, in Dundee. The talk was focussed on identifying DNA methylation changes in model systems resulting from pollution and Xenobiotic exposure, and identifying the underlying biological pathways involved and potential biomarkers. |
| Year(s) Of Engagement Activity | 2022 |
| URL | https://www.thebts.org/events/scottish-interest-toxicology-group-meeting-october-7th-2022/ |
| Description | DNA methylation as a reader of environmental exposure - British Toxicological Society Annual Congress 2022 |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | Dr Sari Pennings was an invited Speaker at the British Toxicological Society 04/2022 Annual Congress, Newcastle. A talk was presented which outlined the potential for DNA methylation alterations in target tissues resulting from environmental exposure could act as a reader or 'barcode' of environmental exposure. |
| Year(s) Of Engagement Activity | 2022 |
| URL | https://www.thebts.org/ |
| Description | DNA methylation profiling of complex woodsmoke exposures - 2024 UKHSA Air Pollution Research Meeting |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | Two short oral presentations and research posters by Dr Sari Pennings, and Wenduo Qi, PhD student in the Pennings lab, reported on Work Package 4 research in Edinburgh/Dundee, representing the UKRI HIP-Tox Consortium at this meeting. This meeting organised by UKHSA in Bristol on 26 November 2024 brought together all stakeholders to UK Air Pollution research. The 2024 UKHSA 'Annual Outdoor and Indoor Air Pollution Research Review' Meeting programme consisted of research talks, poster presentations, and discussions on future research, air pollution policy and further research funding opportunities. |
| Year(s) Of Engagement Activity | 2024 |
| Description | DNA methylation profiling of environmental pollutants exposure - First International Epigenetics Conference |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | International |
| Primary Audience | Professional Practitioners |
| Results and Impact | Dr Sari Pennings presented a poster outlining a DNA methylation methodology that screened for alterations in model systems for pollution/xenobiotic exposure. The aim is to use novel bioinformatic analysis to identify biological pathways that underpin the changes and find potential biomarkers. |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://epigeneticssocietyint.com/conference/rome2023 |
| Description | DNA methylation profiling of single pollutant and complex woodsmoke exposures - 2024 Clean Air Conference |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | Two research posters presentations by Dr Sari Pennings, and Wenduo Qi, PhD student in the Pennings lab reported on Work Package 4 research in Edinburgh/Dundee, together with posters from other Partners in the UKRI HIP-Tox Consortium, summarised in a talk by Programme Lead, Prof Gordon McFiggans. This large meeting organised by UKRI/Met Office in Birmingham on 2-3 October 2024 brought together all stakeholders to UK Air Pollution research. The 2024 Clean Air Conference programme consisted of research talks, poster presentations, and panel discussions on future research and air pollution policy and further research funding opportunities. |
| Year(s) Of Engagement Activity | 2024 |
| Description | HIP-Tox Kick-off Meeting - University of Manchester |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | A meeting to set the Agenda for our 4 year plan to develop a platform to measure the health impact of indoor and outdoor pollution. |
| Year(s) Of Engagement Activity | 2021 |
| Description | HIP-Tox consortium meeting - Imperial College London |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | Research Teams with associated researchers and postgraduate students from six Universities met in London to report on the consortium's research progress, to exchange knowledge, and to discuss future plans. |
| Year(s) Of Engagement Activity | 2022 |
| Description | HIP-Tox consortium meeting - Imperial College London |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | Research Teams with associated researchers and postgraduate students from six Universities met in London to report on the consortium's research progress, to exchange knowledge, and to discuss future plans. |
| Year(s) Of Engagement Activity | 2023 |
| Description | HIP-Tox consortium meeting - University of Birmingham |
| Form Of Engagement Activity | A formal working group, expert panel or dialogue |
| Part Of Official Scheme? | No |
| Geographic Reach | National |
| Primary Audience | Professional Practitioners |
| Results and Impact | Research Teams representing six Work Packages with associated researchers and postgraduate students from six Partner Universities met in Birmingham on 26 March 2024 to present the UKRI consortium's research progress, to exchange knowledge, and to discuss future plans. A joint research talk was presented on Work Package 4 research as part of this programme. |
| Year(s) Of Engagement Activity | 2024 |
| Description | Using DNA methylation as a biomarker for air pollution exposure |
| Form Of Engagement Activity | A talk or presentation |
| Part Of Official Scheme? | No |
| Geographic Reach | Regional |
| Primary Audience | Professional Practitioners |
| Results and Impact | Dr Dimova presented a talk at the Scottish Biomedical Postdoctoral Researcher's Conference on Friday, 8th of September 2023 entitled "Using DNA methylation as a biomarker for air pollution exposure" . This updated our progress in using mouse DNA methylation infinium technology to monitor xenobiotic/pollution exposure in mouse model systems. |
| Year(s) Of Engagement Activity | 2023 |
| URL | https://www.crukscotlandinstitute.ac.uk/events/sbprc.html |