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The abiotic and biotic factors determining microbial respiration, a key process in ocean carbon storage (MicroRESPIRE)

Lead Research Organisation: UNIVERSITY OF EAST ANGLIA
Department Name: Environmental Sciences

Abstract

The balance between the production of organic carbon during phytoplankton photosynthesis and its consumption by bacterial, zooplankton and phytoplankton respiration determines how much carbon can be stored in the ocean and how much remains in the atmosphere as carbon dioxide. The amount of organic carbon stored in the ocean is as large as the amount of carbon dioxide in the atmosphere, and so is a key component in two global carbon cycle calculations needed to avoid a global temperature rise of more than 1.5 degrees C: the calculation of the technological and societal efforts required to achieve net zero carbon emissions and the calculation of the efficiency of ocean-based engineering approaches to directly remove carbon dioxide from the atmosphere.

Yet, despite its vital role, our ability to predict how ocean carbon storage will change in the future is severely limited by our lack of understanding of how plankton respiration varies in time and space, how it is apportioned between bacteria and zooplankton and how sensitive it is to climate change-induced shifts in environmental conditions such as increasing temperature and decreasing oxygen. This woeful situation is due to the significant challenge of measuring respiration in the deep-sea and the uncoordinated way in which these respiration data are archived. This project will directly address these two problems.

We will take advantage of our leadership and participation in an international programme which deploys thousands of oceanic floats measuring temperature, oxygen and organic carbon in the global ocean, in an international team of experts focused on quantifying deep-sea microbial respiration, and our experience of collating international datasets, to produce an unprecedented dataset of bacterial and zooplankton respiration. We will derive estimates of respiration based on data from floats, so that together with estimates derived from recently developed methods including underwater gliders, the new database will include respiration measurements calculated over a range of time and space scales. Crucially, respiration rates will be coupled with concurrent environmental data such as temperature, oxygen and organic carbon. This dataset will enable us to quantify the seasonal and spatial variability of respiration and derive equations describing how respiration changes with the proportion of bacteria and zooplankton present and with the chemical and physical properties of the water. These equations can then be used in climate models to better predict how respiration and therefore ocean carbon storage will change in the future with climate-change induced shifts in temperature, oxygen, organic carbon and plankton community.

We will take part in a hybrid hands-on and online international training course on observations and models of deep-water respiration targeted to early career researchers from developing and developed countries to showcase the useability of the respiration database and the global array of oceanic floats. We will also prepare Science Festival exhibits on observing life in the deep ocean for schoolchildren.

The deliverables of the project - a unique global open-access database of respiration measurements, new equations describing the sensitivity of respiration to changing temperature and oxygen suitable for climate models and online training materials for early career researchers - are of benefit to scientists who aim to predict how a changing climate will affect the storage of carbon in the ocean, educators who train the next generation of ocean scientists and practitioners, policy makers who need to quantify nationally determined contributions to actions limiting global warming, and scientists, engineers, lawyers, governing bodies and commercial companies designing, evaluating and implementing ocean-based carbon dioxide removal technologies.

Publications

10 25 50
 
Title A global dataset of marine pelagic microbial respiration. 
Description This dataset includes measurements of marine microbial respiration and associated environmental variables contributed before July 2025 and collated within the UK research project MicroRESPIRE and the international working group Respiration in the Mesopelagic Ocean (ReMO). The dataset includes respiration rates estimated from oxygen consumption in incubations measured with optodes, membrane inlet mass spectrometry, or Winkler analytical chemistry with optical, potentiometric or spectrophotometric detection. Rates were also estimated from the formation of formazan during incubations of water samples (INT technique) or in samples captured on filters (ETS technique). Estimates of respiration rates were also calculated from the difference between net community production and gross primary production derived from the production of oxygen during an incubation of a water sample spiked with 18O labelled water. Other incubation-based estimates were derived from the fluorescence of the redox dye RedoxSensor Green (RSG) and the production of 14CO2 during the incubation of a water sample spiked with 14C-leucine. In situ respiration was estimated from changes in oxygen concentration measured by oxygen sensors deployed on platforms such BGC Argo floats or CTDs. Measurements of prokaryote production and abundance are also included. Environmental variables include dissolved oxygen, temperature, phytoplankton chlorophyll, inorganic nutrients and dissolved and particulate carbon, nitrogen and phosphorus. The data are available in ASCII, Excel and Ocean Data View formats and accompanied by a machine-readable JSON-LD description file. Standard deviation or standard error uncertainty values are provided where available. Metadata include details of the methods used such as volume sampled, incubation time and temperature, equations used to derive oxygen consumption at in situ temperature and details of any filtration step. Data providers (with ORCID), links to the data centre where the original data are held and publications describing the data and methods are also included. The aim is for the dataset to be as easy to use as possible by field going scientists and modellers investigating the flux of carbon from the surface to the deep ocean, with a particular focus on the mesopelagic zone between 200 and 1000 m. This data collation was supported by funding from the UK Natural Environment Research Council (NERC) project MicroRESPIRE NE/X008630/1 as part of the BioCarbon programme and by funding to the Scientific Committee on Oceanic Research (SCOR) working group #161 (Respiration in the Mesopelagic Ocean: ReMO) provided by the national committees of SCOR and from a grant to SCOR from the U.S. National Science Foundation (OCE-2513154). 
Type Of Material Database/Collection of data 
Year Produced 2026 
Provided To Others? Yes  
Impact N/A yet - publication in preparation 
URL https://www.bodc.ac.uk/data/published_data_library/catalogue/10.5285/4b2a5ac6-b6db-c98e-e063-7086abc...
 
Description Exhibit at Norwich Science Festival - including games on respiration, playdoh plankton, fish tank to guess who lives in the mesopelagic layer and the mechanics of photosynthesis and respiration 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact A one day exhibit at Norwich Science Festival including games for children, information cards, fish tank to guess the depth at which various marine life lives and the difference betqween respiration and photosynthesis. Attendees were children of all ages with their parents. All interested in marine life in the mesopelagic zone.
Year(s) Of Engagement Activity 2025
URL https://norwichsciencefestival.co.uk/
 
Description Participation in radio programme - Radio 4 In Our Time on Plankton 
Form Of Engagement Activity A broadcast e.g. TV/radio/film/podcast (other than news/press)
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Public/other audiences
Results and Impact 1 hour radio programme, hosted by Melvyn Bragg on Plankton. I was one of three scientists taking part. I described the biological carbon pump, importance of respiration, diel vertical migration of zooplankton etc.
Year(s) Of Engagement Activity 2023
URL https://www.bbc.co.uk/programmes/m001r1t5
 
Description Public lecture - Plymouth Marine Science and Education Foundation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Awarded Plymouth Marine Science Medal and invited to give 36th Plymouth Marine Science Medal Lecture to general public including students at the University of Plymouth and professional practitioners at marine research institutes in Plymouth region.
Year(s) Of Engagement Activity 2023
URL https://mymba.mba.ac.uk/member-homepage/courses-and-events/events-calendar/plymsef-medal-lecture-mar...
 
Description School visit in Spain - talk on Plankton Respiration 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Schools
Results and Impact Isabel Seguro visited a high school in Spain. 60 students and teachers attended the one hour talk (in Spanish) on topics including plankton respiration, climate change and how to become a scientific researcher. The talk was later used by the teachers to encourage further discussion about climate change.
Year(s) Of Engagement Activity 2025