PML Modelling

Lead Research Organisation: Plymouth Marine Laboratory

Abstract

The key scientific goal is to improve our understanding of the variability, potential impacts, and feedbacks of global change and anthropogenic forcing on the structure, function and

Organisations

Publications

10 25 50
 
Title Cross currents - UKESM described through poetry 
Description Through the cross currents project, five PML scientist was paired with five poets from Plymouth University. After meeting and discussing the scientists work, the poet prepares a piece of creative writing on the same theme. 
Type Of Art Creative Writing 
Year Produced 2017 
Impact We engaged the public, several local poets, and many members of creative writing clubs on the importance of climate change and the role of models. 
URL http://pml.ac.uk/Media_and_events/Events/PML_Events/Poetry_and_Marine_Science
 
Title QICS Experiment Animation 
Description The QICS project involved a complex novel world-first experiment in which CO2 was injected below the sea floor to mimic a leak from CCS. In order to concisely explain he experimental approach to a wide range of stakeholders an animation of the experimental set up was developed showing the various experimental phases from initial survey through to recovery. 
Type Of Art Film/Video/Animation 
Year Produced 2014 
Impact The video animation has been used effectively to communicate the experimental set-up and findings to a variety of stakeholders, including government, regulators, industry and others with an interest in Carbon Capture and Storage 
URL http://www.bgs.ac.uk/qics/
 
Description a) The ERSEM source code has been fully revised, documented and made publicly available under a GNU Lesser General Public License (http://www.shelfseasmodelling.org/Download-code-en ). b) A set of model bench marking scripts have been developed to facilitate the comparison of model outputs with data and are available with the standard ERSEM release. c) Provision of the carbonate chemistry, air sea gas exchange, benthic sub-model and validation methodologies to the marine biogeochemistry components of UKESM. d) The potential impacts of CO2 leaks resulting from carbon capture and storage on benthic ecosystems have been assessed.
Exploitation Route The models PML develops are used by a number of stakeholders a) UKMO - operational marine forecast b) Cefas (environmental policy and management ) c) UKESM - (next IPPCC inter-comparison experiment)
Sectors Energy,Environment

 
Description Results have informed national and international policy development, industrial decision-making and operational commercial activities. The long term investment into model development, in particular the coupling of carbon dioxide chemistry with biological and 3D physical processes has enabled PML to quickly address several key issues that are crucial to the efficient and economic development of carbon capture and storage in the UK and further afield. In particular with the UK now developing commercial scale CCS the need for scientific support has been urgent. The model has enabled PML to successfully bid into the ETI Marine Monitoring and Verification (MMV) Project, predicated on designing and building an AUV based monitoring system to detect CO2 leakage in the marine environment as well as the Horizon 2020 funded STEMM project, developing novel methods of monitoring. The model has been used to construct baselines of spatial and temporal variability of CO2 associated parameters (pH and pCO2) in the absence of sufficient observational data, which enable the development of monitoring strategies. Outputs from PML modelling have been used to provide advice to governments about pressures on fisheries under climate change, for example a Policy Note for the Government of Bangladesh. Outcomes from PML modelling have informed the Environmental Audit Committee Enquiry into the Environmental Impact of Microplastics and contributed to a UK Government POSTnote on Marine Microplastic Pollution. Outcomes from PML modelling have underpinned a formal response by Plymouth Marine Laboratory to the House of Commons Science and Technology Committee enquiry on Ocean Acidification. PML supplied an expert witness, Dr Carol Turley who gave oral evidence to the committee on the 2nd March, 2017.
First Year Of Impact 2012
Sector Energy,Environment
Impact Types Economic

 
Description Acknowledged in UK Government POSTnote on Marine Microplastic Pollution
Geographic Reach National 
Policy Influence Type Gave evidence to a government review
URL http://researchbriefings.parliament.uk/ResearchBriefing/Summary/POST-PN-0528?utm_source=website&utm_...
 
Description Advice regarding future climate and ocean acidification impacts
Geographic Reach Multiple continents/international 
Policy Influence Type Participation in advisory committee
 
Description CMEMS training session at European Space Solutions - Den Hague
Geographic Reach Europe 
Policy Influence Type Influenced training of practitioners or researchers
Impact Increased uptake of Copernicus Marine Enviromental Monitoring Service Products
 
Description Consulted on UK Houses of Parliament POSTnote on Microplastics in the Marine Environment (in preparation)
Geographic Reach National 
Policy Influence Type Implementation circular/rapid advice/letter to e.g. Ministry of Health
 
Description Course on Shellsim for researchers at the International Marine Research (Oristano - Italy)
Geographic Reach Europe 
Policy Influence Type Influenced training of practitioners or researchers
 
Description ESPA Deltas Policy Note for the Government of Bangladesh
Geographic Reach Asia 
Policy Influence Type Implementation circular/rapid advice/letter to e.g. Ministry of Health
URL http://www.espadelta.net/resources_/policy_briefs
 
Description Environmental Impact Assessment for Carbon Capture and Storage
Geographic Reach National 
Policy Influence Type Participation in advisory committee
 
Description European Marine Strategy Coordination Group (MSCG)
Geographic Reach Asia 
Policy Influence Type Participation in advisory committee
 
Description House of Commons Scientific Enquiry into Ocean Acidification
Geographic Reach National 
Policy Influence Type Gave evidence to a government review
URL http://parliamentlive.tv/Event/Index/3bfb278e-acaf-4d9e-86a6-55c986e728de
 
Description Invited presentation: World Fisheries Congress 2012
Geographic Reach Multiple continents/international 
Policy Influence Type Participation in a national consultation
 
Description Marine Management Organisation
Geographic Reach Local/Municipal/Regional 
Policy Influence Type Influenced training of practitioners or researchers
Impact Consultation for the amendment of the Plymouth Sound dredging spoil disposal site. Used our modelling expertise to improve the quality of the work which was being used to determine a new disposal site location.
 
Description Marine Strategy Framework Directive Good Environmental Status (GES) Working Group Workshop on Biodiversity theme (Descriptors 1, 2, 4 and 6)
Geographic Reach Asia 
Policy Influence Type Participation in advisory committee
 
Description Marine ecosystem modelling training to North African partners
Geographic Reach Africa 
Policy Influence Type Influenced training of practitioners or researchers
Impact We trained researchers to use a state-of-art biogeochemical model for management of marine ecological status and monitoring networks
 
Description Provided written evidence to Environmental Audit Committee Inquiry into the Environmental impact of microplastics
Geographic Reach National 
Policy Influence Type Gave evidence to a government review
URL http://data.parliament.uk/writtenevidence/committeeevidence.svc/evidencedocument/environmental-audit...
 
Description Shelf Seas Biogeochemistry - DEFRA Project Summary
Geographic Reach National 
Policy Influence Type Gave evidence to a government review
URL https://www.uk-ssb.org/shelf_seas_report.pdf
 
Description citation in Foresight future of the sea
Geographic Reach Multiple continents/international 
Policy Influence Type Citation in other policy documents
URL https://www.gov.uk/government/publications/future-of-the-sea--2
 
Description citation in Future of the sea: biological responses to ocean warming
Geographic Reach National 
Policy Influence Type Citation in other policy documents
URL https://www.gov.uk/government/publications/future-of-the-sea-biological-responses-to-ocean-warming
 
Description citation in Future of the sea: ocean acidification
Geographic Reach National 
Policy Influence Type Citation in other policy documents
URL https://www.gov.uk/government/publications/future-of-the-sea-ocean-acidification
 
Description citation in POST brief: UK Fisheries Management
Geographic Reach National 
Policy Influence Type Citation in other policy documents
URL https://researchbriefings.parliament.uk/ResearchBriefing/Summary/POST-PN-0572
 
Description citation in Recommendations to inform a UK Ocean Acidification Monitoring Strategy
Geographic Reach National 
Policy Influence Type Citation in other policy documents
URL https://www.gov.uk/government/publications/recommendations-to-inform-a-uk-ocean-acidification-monito...
 
Description citation in UK Fisheries Management
Geographic Reach Europe 
Policy Influence Type Citation in other policy documents
URL http://researchbriefings.parliament.uk/ResearchBriefing/Summary/POST-PN-0572
 
Description coupling of FVCOM-ERSEM
Geographic Reach National 
Policy Influence Type Influenced training of practitioners or researchers
 
Description ACT Accelerating CCS Technologies
Amount £507,000 (GBP)
Funding ID project no. 271497 
Organisation Department for Business, Energy & Industrial Strategy 
Sector Public
Country United Kingdom
Start 09/2017 
End 08/2022
 
Description Article 37: Support for the design and implementation of conservation measurement and regional cooperation
Amount £250,000 (GBP)
Organisation Department For Environment, Food And Rural Affairs (DEFRA) 
Department Marine Management Organisation (MMO)
Sector Public
Country United Kingdom
Start 01/2018 
End 03/2019
 
Description Assessing the combined impact of multiple drivers on the carbon and nutrient budgets of the UK Shelf Seas
Amount £29,507 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 02/2016 
End 02/2018
 
Description Autonomous observing JUN17
Amount £1,600,000 (GBP)
Funding ID NE/R006849/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 02/2018 
End 01/2021
 
Description British Council Researcher Links grant
Amount £2,000 (GBP)
Organisation British Council 
Sector Charity/Non Profit
Country United Kingdom
Start 01/2016 
End 01/2016
 
Description CMEMS TOSCA
Amount € 118,246 (EUR)
Organisation European Commission 
Sector Public
Country European Union (EU)
Start 03/2016 
End 03/2018
 
Description Copernicus Marine Environment Monitoring Service (Project NOWMAPS)
Amount € 400,000 (EUR)
Organisation European Union 
Sector Public
Country European Union (EU)
Start 03/2018 
End 03/2021
 
Description Copernicus Marine Environment Monitoring Service (project OPTIMA)
Amount € 123,000 (EUR)
Organisation European Union 
Sector Public
Country European Union (EU)
Start 04/2018 
End 03/2020
 
Description Detection and Attribution of Regional greenhouse gas Emissions in the UK (DARE-UK)
Amount £2,500,000 (GBP)
Funding ID NE/S004947/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 02/2019 
End 02/2023
 
Description Dream fund - People's Postcode Trust
Amount £100,000 (GBP)
Organisation People's Postcode Trust 
Sector Charity/Non Profit
Country Unknown
Start 03/2016 
End 03/2018
 
Description EC FP7 Space program
Amount € 380,000 (EUR)
Funding ID European Project 283291 
Organisation European Commission 
Department Seventh Framework Programme (FP7)
Sector Public
Country European Union (EU)
Start 01/2012 
End 12/2014
 
Description EU H2020 SFS-11b-2015 - Consolidating the environmental sustainability of European aquaculture
Amount € 6,918,512 (EUR)
Funding ID Project ID: 678396 
Organisation European Union 
Sector Public
Country European Union (EU)
Start 03/2016 
End 02/2020
 
Description EU Horizon2020
Amount € 16,000,000 (EUR)
Funding ID 654462 
Organisation European Union 
Sector Public
Country European Union (EU)
Start 03/2016 
End 03/2020
 
Description EUROMARINE 2014 call
Amount € 10,000 (EUR)
Organisation EUROMARINE 
Sector Public
Country European Union (EU)
Start 05/2015 
End 05/2016
 
Description H2020 TAPAS
Amount € 6,922,128 (EUR)
Funding ID 678396 
Organisation European Commission 
Sector Public
Country European Union (EU)
Start 04/2016 
End 04/2020
 
Description IMMERSE: Improving Models for Marine EnviRonment SErvices
Amount € 4,998,000 (EUR)
Funding ID 821926 
Organisation European Commission H2020 
Sector Public
Country Belgium
Start 12/2018 
End 12/2022
 
Description Marine Integrated Autonomous Observing Systems Programme (Project CAMPUS)
Amount £525,000 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 05/2018 
End 04/2021
 
Description Marine Monitoring and Verification
Amount £5,400,000 (GBP)
Organisation Energy Technologies Institute (ETI) 
Sector Public
Country United Kingdom
Start  
 
Description NERC Industrial CASE Studentship Competition 2017
Amount £90,668 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 10/2017 
End 09/2021
 
Description NERC discovery science (standard grant)
Amount £644,302 (GBP)
Funding ID NE/R011087/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 04/2018 
End 03/2022
 
Description OstrInnova - Valorizzazione della produzione sostenibile delle ostriche nel sistema produttivo della molluschicoltura in Sardegna
Amount € 10,000 (EUR)
Organisation International Marine Centre 
Sector Charity/Non Profit
Country Italy
Start 04/2017 
End 03/2018
 
Description PML-UoE research fund
Amount £5,575 (GBP)
Organisation Plymouth Marine Laboratory 
Sector Academic/University
Country United Kingdom
Start 01/2015 
End 06/2015
 
Description PRIMROSE: Predicting Risk and Impact of Harmful Events on the Aquaculture Sector
Amount € 2,000,000 (EUR)
Organisation INTERREG IIIC North 
Sector Public
Country France
Start 11/2017 
End 12/2021
 
Description Pathways Of Dispersal for Cholera And Solution Tools (PODCAST)
Amount £404,616 (GBP)
Funding ID NE/S012567/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 02/2019 
End 02/2021
 
Description Researcher Links grant
Amount £2,000 (GBP)
Organisation British Council 
Sector Charity/Non Profit
Country United Kingdom
Start 03/2015 
End 03/2015
 
Description The changing Arctic Ocean SEP2017
Amount £692,805 (GBP)
Funding ID NE/R012830/1 
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 03/2018 
End 02/2022
 
Description Toward an improved representation of the Fe cycle in ERSEM
Amount £4,200 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 11/2016 
End 11/2016
 
Description UKESM Mullticentre national capability
Amount £978,127 (GBP)
Organisation Natural Environment Research Council 
Sector Public
Country United Kingdom
Start 04/2016 
End 03/2021
 
Description climate change projections of fish biomass by national EEZs 1850-2099
Amount € 57,609 (EUR)
Organisation Food and Agricultural Organisation (FAO) 
Sector Charity/Non Profit
Country Italy
Start 03/2017 
End 12/2017
 
Title Boundary conditions for 1D modelling 
Description Extracts ERA5 meteorological data and tidal forcings for any location worldwide, which is required as boundary conditions to the 1D GOTM-ERSEM model. 
Type Of Material Improvements to research infrastructure 
Year Produced 2019 
Provided To Others? Yes  
Impact Delivery of CAMPUS project for the setup of 1D model systems at a range of UK sites. 
 
Title Culture methods established for enabling analytical examination of phytoplankton DOM 'fingerprints'. 
Description Culturing methods using axenic cell lines established so that the DOM produced by phytoplankton can be extracted, and samples prepared for mass spectrometry analysis. These fingerprints will represent the biochemical complexity of the living cells. Uniquely to this study, this material will not have been exposed to bacterial activity and so will include the full spectrum of material that is available to natural bacterial communities. 
Type Of Material Biological samples 
Year Produced 2019 
Provided To Others? No  
Impact This is a facilitating development for the delivery of the project. 
 
Title PML gitlab server 
Description We set up a gitlab server to help share the model source code and other code between ourselves. We have also added outwards facing components to the server, which allow further collaboration between external scientists. 
Type Of Material Improvements to research infrastructure 
Year Produced 2014 
Provided To Others? Yes  
Impact This server has allowed other scientists to access and run the ERSEM model. Over 180 scientists have created accounts on this server, allowing the model and other code to be easily disseminated in the community. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk
 
Title Time Series Analysis in Earth System Analysis (TSAinESA) 
Description Uses Box Jenkins Transfer Function methodology from which to analyse the underlying features of Earth Systems. The tool is highly adaptable, programmed to be fast and portable (using Python , R combination). 
Type Of Material Model of mechanisms or symptoms - non-mammalian in vivo 
Provided To Others? No  
Impact Proves a standardised way to analyse the presence of dynamic climatic cycles, trends and explanatory features. 
 
Title UK Earth System Model Biogechemistry validation toolkit 
Description The UK Earth System Model Biogechemistry validation toolkit is a software toolkit that assists in the validation of the marine biogeochemistry component of the UK Earth System model. 
Type Of Material Improvements to research infrastructure 
Year Produced 2015 
Provided To Others? Yes  
Impact These tools are currently being used to assess the spin up and development of the UKESM marine biogeochemistry model. 
 
Title UKESM analysis toolkit 
Description A toolkit of analysis techniques has been shared with collaborating scientists in the Met Office and Reading University. This analysis code forms the basis of the validation tools for the UK Earth System Model (UKESM)'s biogeochemical ocean component (MEDUSA). 
Type Of Material Improvements to research infrastructure 
Year Produced 2014 
Provided To Others? Yes  
Impact This toolkit is envisaged to assist with the model development and validation of the UKESM model. The results of the UKESM model runs will be submitted WCRP CMIP6. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/ledm/ukesm-validation
 
Title 1 month of gridded hourly FVCOM hydrodynamics for a sub region of model domain (Iles of Scilly). 
Description Provided one month of hourly FVCOM model outputs from the UK wide domain to Mres students in oceanography at the University of Plymouth through Phil Hosegood. The model outputs were gridded into a regular grid for a region around the Iles of Scilly and delivered in matlab binary file format. The data supported the students course work on marine renewable energy. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact The model simulations contributed to the education of Mres students and their understanding of tidal energy resources. 
 
Title 3 months worth of Wind model output for the wider Severn Estuary for University of Plymouth MSc course work 
Description We generated 3 months of 3 hourly wind model output from a WRF model implementation in the UK geographical area at 3km resolution. The model outputs were provided to the University of Plymouth MSc Physical Oceanography students and contributed to their course work. They were tasked to evaluate the feasibility of locating a wind energy farm in the Severn Estuary 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
Impact The data contributed to the skill development of MSc students by allowing them to work with "real life" example of the process followed for the identification of energy resources, optimal location of wind farms and quantification of energy extraction from natural resources. 
 
Title 3D AMM-jellyfish 
Description 10 years simulation of the Atlantic Margin Ecosystem with NEMO-ERSEM with a diversified trophic web with 5 different Mesozooplankton group of different size and 5 jellyfish group of different size 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? No  
Impact no impact yet 
 
Title 5 years of model simulations with FVCOM-ERSEM-Shellsim (2005-2009) 
Description 5 years of daily averaged model output from FVCOM-ERSEM-Shellsim coupled model for the Lymebay region (UK). The model includes hydrodynamics (FVCOM), biogeochemistry (ERSEM), suspended sediment dynamics (CSTM) and mussel aquaculture production (ShellSIM). The model variables include all relevant variables to evaluate the potential impacts on the biogeochemistry of the region to different levels of mussel aquaculture productions. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact The approach reported here is most suited to new farms during the licensing application period and the development of the business plan. The level of detail in the model results can provide a comprehensive evaluation of the potential impacts over a wide range of ecosystem characteristics. The approach can be customised to look at site specific characteristics (presence of deposition sensitive reef species such as pink sea fans (Eunicella verrucosa)) and can be further coupled to higher trophic level model systems such as Ecopath with Ecosim (EwE) to explore wider interactions with the regional ecosystem (i.e artisanal fisheries). The model can be run for long periods (i.e. multiple growth cycles) to evaluate cumulative impacts (long-term community shifts driven by benthic-pelagic coupling or selective feeding on microzooplankton) as well as evaluating recovery pathways. The model system can be used to explore different production scenarios to feed into the company business plan as well as into the licensing procedure. These scenarios can include changes to the farm spatial configuration (i.e. orientation, rope density) to minimise long-term impacts and increase production, but also implement management approaches (i.e. staggered production) that could help maximise both production and economic profit (e.g. sustained production over longer periods to avoid market saturation and drop in prizes) 
 
Title AMM7 hindcast 1981-2015 
Description Hindcast simulation of the marine ecosystem of the NW European Shelf Seas using the last stable releases of NEMO and ERSEM for the years 1981-2015 
Type Of Material Data analysis technique 
Year Produced 2016 
Provided To Others? Yes  
Impact Holistic Information on NW European Shelf Seas for use in NERC's SSB and MERP programs and ReCICLE. 
 
Title AMM7 trawling impact simulation 
Description Simulation of the coupled biogeochemical model NEMO-ERSEM in the Atlantic Margin domain for the period 2000-2015 to assess the impact of trawling 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? Yes  
Impact the model outputs have been used by other scientists in the Marine Ecosystem Research Program. the outputs have also been used presented to Caron Montgomery (head of Marine & Fisheries Evidence team - DEFRA) and used in a scientific workshop on trawling 
 
Title AMM7-V1 hindcast 
Description Simulation of the biogeochemistry of the NorthWestern European Shelf for the period 1981-2015 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
Impact none yet, but the simulation will allow a detailed description of the carbon budget of the UK waters 
 
Title Assimilative Rapid Environmental Assessment of the North East Atlantic 
Description NETCDF database of daily and monthly outputs of marine ecosystem indicators in the North East Atlantic (years 2012-2013). This is the outputs of the assimilation of ocean colour data into the ecosystem model of the North East Atlantic. 
Type Of Material Database/Collection of data 
Year Produced 2014 
Provided To Others? Yes  
Impact This database represent up-to-date estimates of ecological indicators of environmental status (sensu European and National legislation and recommendations) useful to lead management actions. 
URL http://portal.marineopec.eu/
 
Title Background values for benthic variables in ERSEM 
Description Added background values to variables of the benthic ERSEM modules. This is one of the original ERSEM features, which is required also in new model structure to allow e.g. recovery of benthic faunal groups. 
Type Of Material Computer model/algorithm 
Year Produced 2016 
Provided To Others? Yes  
Impact Allow modelling of recovery of benthic fauna and bacteria after their elimination due to e.g. stress, trawling, predation. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/edge/ersem/tree/V1/SAFE
 
Title Bay of Bengal model outputs on the PML modelling portal 
Description Data from the Bay of Bengal POLCOMS-ERSEM hydrodynamic-ecosystem model is now freely available via the PML modelling data portal: primary production, dissolved oxygen, nitrate and other key environmental indicators. 
Type Of Material Database/Collection of data 
Year Produced 2016 
Provided To Others? Yes  
Impact Not known - we do not keep records of data access. 
URL https://portal.ecosystem-modelling.pml.ac.uk/
 
Title Bay of Bengal model outputs, including temperature, primary production and sea surface elevation. 
Description Outputs from three 129-years runs of a hydrodynamic-ecosystem model for the Bay of Bengal, representing three different climate+socio-economic scenarios. 
Type Of Material Database/Collection of data 
Year Produced 2014 
Provided To Others? Yes  
Impact Outputs are being used in the development of the ESPA-Deltas integrated model and contributing to several scientific papers. 
 
Title Benthic ERSEM Model 
Description Development of a Model to investigate impacts on sediment biology and chemistry due to changing co2 and the associated changes in pH and alkalinity. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Enable investigation of impacts on sediment biology and chemistry due to changing co2 and the associated changes in pH and alkalinity. 
 
Title Benthic carbonate system in FABM-ERSEM 
Description Implemented benthic alkalinity fluxes and carbonate system calculations in FABM-ERSEM model framework. Contributions of benthic biogeochemical fluxes to benthic alkalinity are taken into account. Bulk benthic pH and saturation states are calculated, also rough per-layer estimates. 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact Benthic carbonate system implementation is a basis for many ocean acidification and CCS impact studies, long-term carbon dynamics modelling in climate scenarios. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/edge/ersem/tree/V1/SAFE
 
Title CLimate RUN RCP85 
Description Simulation of the Atlantic Margin domain from 1980 to 2100 under the IPCC AR5 RCP 8.5 scenario 
Type Of Material Database/Collection of data 
Year Produced 2015 
Provided To Others? Yes  
Impact first transient simulation of the Climate change and OA impact on the region at this resolution. Talk accepted to the IV Ocean in a high CO2 world symposium, plus other presentation from colleagues at NOC 
 
Title CO2 air-sea gas parameterisation 
Description 2 simulations of the North-Western European Shelf with POLCOMS-ERSEM has been completed for the period 2008-2010 with different parameterisation of the air-sea fluxes of CO2 (Nightingale and COARE). daily and monthly spatially resolved values of air-sea flux of CO2 are available, together with many more variables of the model 
Type Of Material Database/Collection of data 
Provided To Others? No  
Impact the comparison of the two parameterisation show a clear impact on the annual mean estimates of air-sea fluxes of CO2 up to 10% this information has been passed to the UK-Earth System Model consortium and they are planning to change the parameterisation of next UK-ESM 
 
Title Characterisation of environmental baseline of carbonate system variables 
Description A method allowing for characterisation of near-bottom baseline conditions of carbonate variables was developed and implemented using multi-year time-series subsampled from larger-scale 3D model simulation. The method allows detecting baseline natural variability of pCO2/pH as predicted by covariance of other model variables. Deviations from predicted values might indicate possibility of carbon dioxide leakage from CCS. 
Type Of Material Data analysis technique 
Provided To Others? No  
Impact The method allows discrimination between baseline natural conditions of carbonate system and potential leakage from CCS site. This methodology has a potential for implementation in CCS site monitoring and leakage detection technology. 
 
Title Costruire: Correlation Matrix of ERSEM Ensemble for data assimilation 
Description This dataset formed part of the Costruire project. We produced a correlation Matrix of an 100 member ERSEM Ensemble model run in the AMM domain. The correlation matrix will be used as a tool in Ecosystem model development and data assimilation work. 
Type Of Material Database/Collection of data 
Provided To Others? No  
Impact The correlation matrix dataset is used by the MO for data assimilation. 
 
Title Coupling MEDUSA and ERSEM benthic modules 
Description Incorporation of MEDUSA in FABM framework led to certain degree of modularisation of its code, which allowed to test coupling of its pelagic component with ERSEM benthic modules. The coupled configuration was tested in a global NEMO-FABM-MEDUSA setup (ORCA2). The benefit of coupling is that the lightweight of MEDUSA code suitable for global simulations is combined with considerably more detailed than the default benthic zone description from ERSEM, which will benefit future simulations at a higher resolution and allow better estimates of contribution of shelf seas within the Earth system. Configuration file for MEDUSA-ERSEM is available on PML gitlab server. 
Type Of Material Computer model/algorithm 
Year Produced 2019 
Provided To Others? No  
Impact No impacts so far. 
URL http://gitlab.ecosystem-modelling.pml.ac.uk
 
Title Coupling of FVCOM with FABM 
Description We have updated the FVCOM-ERSEM original coupling to a more generic framework (FABM) that allows not only simulations of coupled model FVCOM-ERSEM but a range of other ecosystem models using the FABM framework (fasham, simpler npzd models). 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact We have provided the code to the FVCOM developers group who are using our approach in NSF proposals. We are also in contact with a NOAA research group for the implementation of FVCOM-FABM in the great lakes to setup a eutrophication forecast system. We have presented the work in the FVCOM international workshop (Halifax, Canada, October 2015) and several groups have expressed interest in using our version of the code. The official FVCOM website (http://fvcom.smast.umassd.edu) will have a permanent link to PML ecosystem modelling group for gaining access to FVCOM-FABM. 
URL http://fvcom.smast.umassd.edu
 
Title DMS model formulation re-coded in the FABM-ERSEM framework 
Description Model formulation describing DMSP and DMS dynamics (Polimene et al., 2012) have been re-coded in the FABM-ERSEM modelling framework. 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? No  
Impact The DMS(P) model developed at PML (Polimene et al., 2012) is now merged into the latest version of FABM-ERSEM developed in the framework of the Shelf Sea Biogeochemistry (SSB) program . The new FABM-ERSEM has increased modularity allowing a more versatile use of the model. The model code is now usable by the whole ERSEM community, within SSB and beyond. This version of the model will be used as developing platform in the project:' A multidisciplinary study of DMSP production and lysis - from enzymes to organisms to process modelling'. 
 
Title DMSP model developmets 
Description The DMSP model published in 2012 (Polimene at al 2012) was modified extending DMSP production to all the functional types described in the ERSEM model. The model was implemented at L4 station in the Western English Channel and simulation were qualitatively compared with available literature data (Archer et al 2009) 
Type Of Material Computer model/algorithm 
Year Produced 2019 
Provided To Others? No  
Impact This exercise provided a preliminary assessment of model capability to simulate DMSP dynamics in a coastal area 
 
Title Data assimilation system for ESA CCI satellite products 
Description a data assimilation system for marine ecosystem models (POLCOMS-ERSEM coupled to Ensemble Kalman filter) has been enhanced and adapted to assimilate the last generation of ocean colour products (ESA OC-CCI). 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact The enhancement of the data assimilation systems allows to extend in space and time the reanalysis of shelf-sea biogeochemistry. This leads to a potential improvement in the estimation and prediction of ecosystem indicators that are relevant for marine ecosystem management and climate change studies. 
 
Title Data assimilation system for Rapid Environmental assessment (REA) 
Description The data assimilation system of the North East Atlantic have been enhanced and adapted to produce last-season estimates of ecological indicators by exploiting operational meteorological data from UK MetOffice. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact The data assimilation system has now the capacity of providing up-to-date estimates of ecological indicators of environmental status (sensu European and National legislation and recommendations) useful to lead management actions. 
URL http://www.marineopec.eu
 
Title Development of a lower trophic level ecosystem model for the Bay of Bengal 
Description The General Coastal Ocean Modelling System , GCOMS (Holt et al. 2009) has been used to develop a physical-biogeochemical model for the coastal zone of the Bay of Bengal. Changes from the original GCOMS implementation include a revised area to match the available data from the UK Met Office Regional Model, updated boundary condition data based on UKMO general cuirculation model and seasonal river flows estimated using the data set of (Dai and Trenberth 2002). 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Model outputs will be used to further project outputs and future research, as described in a separate entry. 
 
Title Diagnostic variables in benthic ERSEM 
Description Added series of individual diagnostic variables (i.e. fluxes) to be added to aggregate diagnostic variables for budget calculations. These include particulate deposition fluxes, suspension-feeding, resuspension fluxes, fluxes of dissolved inorganics and gases, biotic respiration etc. 
Type Of Material Computer model/algorithm 
Year Produced 2016 
Provided To Others? Yes  
Impact Individual diagnostics are necessary for calculation of aggregated diagnostics (fluxes), which will allow estimates of stocks and fluxes of carbon and other elements in North-Atlantic Shelf area, implemented in 3D modelling context. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/edge/ersem/
 
Title Dissemination of ESPA outputs to UNESCO-IHE researchers 
Description Sea surface elevation projections for the Bangladesh coast, 1970-2100. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
Impact Data was used in a UNESCO-IHE project on Relative Sea Level Rise Scenarios for the central coast of Bangladesh. 
 
Title DivERSEM scripts 
Description Scripts to generate ERSEM configurations files for diversity study have been generated and tested. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact no significant impact yet 
 
Title Diversified benthic macrofauna structure in ERSEM 
Description ERSEM input files for modelling diversified structure of benthic macrofauna were created. This structure contains 6 functional types compared to classical 2-type implementation in ERSEM. Model results were validated against observational data from Station L4 of the Western Channel Observatory. Functional role of each group within whole ecosystem was analysed. Manuscript describing model setup and results is currently in preparation. 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? No  
Impact This model structure was one of initial steps towards reseach of functional importance of benthic biodiversity using modelling approach, and mutual influence of biodiversity and physical forcing/hydrodynamics. 
 
Title EMPIRE_ERSEM 
Description Assimilation system coupling a number of assimilation algorithms to the marine model GOTM-ERSEM, exploiting the assimilation framework EMPIRE developed by University of Reading/NCEO 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact This assimilation system allows the unprecedented use of novel assimilation algorithms with marine ecosystem models 
 
Title ERSEM 15.06 release 
Description Update of ERSEM model release supported by publication on Geoscientific Model Development Discussions 
Type Of Material Computer model/algorithm 
Year Produced 2014 
Provided To Others? Yes  
Impact The ERSEM model has now a user base of over 100 registered users from all continents of the world and is used as the ecosystem component of CMEMS for the North West European shelf seas. 
URL http://www.shelfseasmodelling.org
 
Title ERSEM 16.06 release 
Description First released of the fully modular FABM compatible ERSEM model 
Type Of Material Computer model/algorithm 
Year Produced 2016 
Provided To Others? Yes  
Impact Ecosystem model for a wide range of applications from process development over regional to global scale used across the whole worlds (> 200 users). 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/stable/ERSEM/tags/16.06
 
Title ERSEM V1 
Description the new version of ERSEM (ERSEM V1) to be used in the SSB program has been finalised in a new separate branch of the ERSEM repository. 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact This version will be used for the delivery of the main outputs of SSB WP4 and SSB WP5 
 
Title ERSEM enhancements 
Description New optional ERSEM updates for calcification and explicit DOM cycling of bacteria, vertical flux limiter. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact New optional ERSEM updates for calcification and explicit DOM cycling of bacteria, vertical flux limiter 
 
Title EnKF_ERSEM 
Description Data assimilation system, based on the Ensemble Kalman filter, for the assimilation of ocean colour data into ecosystem models of shelf-seas. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact This assimilation system provided the first decadal reanalysis of the biogeochemistry of the North East Atlantic, through assimilation of ocean colour data from ESA's Climate Change Initiative - Ocean Colour 
 
Title Epibenthic and infaunal predators in ERSEM 
Description Zoobenthic functional groups of epibenthic and infaunal predators were added to ERSEM. The addition is facilitated through fabm.yaml input and is utilizing generalized structure of model code for benthic fauna. 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact More complete representation of benthic faunal functional types in the model. Possibility for implementing the model for benthic biodiversity studies. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/edge/ersem/tree/feat/benPred
 
Title Extraction of BDY 
Description I generated a method and associated script that automatically extracts boundary condition for any regional ocean model from global dataset and Earth system models from the CMIP5 family to run downscale climate projections 
Type Of Material Computer model/algorithm 
Year Produced 2019 
Provided To Others? No  
Impact the method and script will allow an easier downscaling of climate projection in regional seas 
 
Title FVCOM implementation in the Hardangerfjorden (Norway) 
Description Implementation of the hydrodynamic model FVCOM in the Hardangerfjorden fjord in Southern Norway with a nominal resolution of 400 m. The model has been nesting to the High resolution (800m) ROMS implementation by NIVA. The model has freshwater inputs from the major rivers delivering into the fjord as well as melt water from over 900 coastal points. The model has been ran for 2013 with the aim to look at dispersion of organic matter from fish farm cages. The model will force a higher resolution (~50m) subdomain of the interior to focus the study of 2 fish farms. 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? Yes  
Impact The model contributes to the study of the fate of anti-bacterial treatments of salmon in fish cages which is on-going. It will enable the assessment of current aquaculture practices impacts on benthic biota. 
 
Title FVCOM implementations 
Description Implementation of FVCOM in the UK wide shelf (3D barotropic) as well as regional domains for the EMEC site (Scotland), the Wavehub site (Cornwall) for NERC grant FLOWBEC (full 3D baroclinic), and the Irish Sea for UKERC phase II project (3D barotropic). Implementation of FVCOM (full 3D baroclinic) in the Nadoor Lagoon for EU project MEDINA., Implementation of FVCOM in the UK wide shelf (3D barotropic) as well as regional domains for the EMEC site (Scotland), the Wavehub site (Cornwall) for NERC grant FLOWBEC (full 3D baroclinic), and the Irish Sea for UKERC phase II project (3D barotropic). Implementation of FVCOM (full 3D baroclinic) in the Nadoor Lagoon for EU project MEDINA. 
Type Of Material Computer model/algorithm 
Year Produced 2013 
Provided To Others? Yes  
Impact
 
Title FVCOM implementations. 
Description Implementation of FVCOM in the UK wide shelf (3D) as well as regional domains for the EMEC site (Scotland) and the Wavehub site ( Cornwall). Other European regional implementations include the Western Mediterranean (Alboran Sea). New local and high resolution implementations (sub km resolution) include the Plymouth Western Coastal Observatory domain (UK), the Ria de Vigo (North West Spain), as well as the Nador Lagoon in North Morocco. 
Type Of Material Computer model/algorithm 
Year Produced 2013 
Provided To Others? Yes  
Impact The model outputs have been/are currently being used in three PhD projects, one within the FLOWBEC NERC project (James Waggitt, Aberdeen University), and others through NERC studentships (Samantha Cox and Marcus Zanacchi, both at university of Plymouth). Model output have been submitted to a dedicated FP7 project MEDINA GEOSS server (http://www.medinageoportal.eu) for the Nador Lagoon implementation. The UK wide model implementation has been shared with NOCL staff. The Ria de Vigo implementation has contributed to a Spanish funded project (STRAMIX). 
URL http://www.medinageoportal.eu
 
Title FVCOM matlab toolbox 
Description Development of an FVCOM (Finite Volumen Coastal Ocean Model) matlab toolbox for the automatic generation of input files for FVCOM and for postprocessing and plotting of FVCOM simulation results. The implementation is domain independent. This toolbox is updated regularly and distributed under MIT license. 
Type Of Material Computer model/algorithm 
Year Produced 2013 
Provided To Others? Yes  
Impact This toolbox is now being distributed together with the FVCOM code by the FVCOM development team. As such, it has given PML, in particular the fine-scale team at PML, world-wide exposure. In our experience, this toolbox has reduced the time required for the implementation of FVCOM in a new domain by more than 70%. It has also reduced the time needed for evaluating and modifying existing FVCOM implementations and it has probably made the process more accessible to new users. We believe the increase in the use of FVCOM in UK science is partly a direct consequence of this toolbox having been made publicly available and continuously updated. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/fvcom/fvcom-toolbox
 
Title FVCOM model outputs for microplastics 
Description FVCOM hydrodynamic model output. Used to guide fieldwork sampling campaigns for effective use of expensive fieldwork resources. 
Type Of Material Database/Collection of data 
Provided To Others? No  
Impact The fieldwork is ongoing. 
 
Title FVCOM model outputs for the UK shelf 
Description FVCOM hydrodynamic model output supplied to MERP research programme. 
Type Of Material Database/Collection of data 
Year Produced 2013 
Provided To Others? Yes  
Impact Paper published using this data. Fieldwork campaigns informed by the outcomes of the model outputs. 
 
Title FVCOM-ERSEM implementation in Lyme Bay 
Description Implementation of FVCOM-ERSEM coupled hydrodynamic-biogeochemical model in the Lyme Bay coastal area (South West UK) at a nominal resolution of 400m. The model is nested within our implementation of the same model in the Western UK shelf. The model has already been run for two years. 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? Yes  
Impact This model implementation in the Lyme Bay has enabled the simulation of the growth of mussel farms located in the area by feed the model results to PML's ShellSIM model that resolves the evolution of cultured rope mussels. The model implementation is also suitable for evaluating the fate and distribution of freshwater borne pathogens such as E. coli and its potential impact on aquaculture sites. 
 
Title FVCOM-ERSEM implementation in the Conwy estuary and surrounding coastal areas 
Description We have implemented a realistic setup of the hydrodynamic model FVCOM and the biogeochemical model ERSEM in the North Wales area including both Anglesey coastal areas and the Conwy estuary. The model is nested within our Western UK shelf FVCOM-ERSEM model. We have simulated 2005. The results constitute a preliminary version which we will update during 2018. 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? Yes  
Impact This is the first time the biogeochemistry of the Conwy has been simulated at the resolution of this model. The main purpose of the model is to evaluate the main processes involved in the processing of terrestrial organic matter which will happen during 2018. The setup is suitable for the study of marine renewable energy impacts on marine biogeochemistry. It could similarly be used to evaluate the potential growth of the mussel farms located near the Menai Straight. 
 
Title FVCOM-ERSEM implementation in the Tamar estuary and coastal areas 
Description We have implemented a realistic setup of the hydrodynamic model FVCOM and the sediment transport model CSTM. We have initiated the process of validating the model results. We aim to make this implementation operational during the coming year. 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? Yes  
Impact The model is capable of simulating the dispersion of passive contaminants and could be used to evaluate the risks posed to the water quality of bathing waters associated to outfall or storm effluents. We have used the model to predict where micro plastics are likely to accumulate in the Plymouth area. This enabled the collection of micro plastic water samples. The model has also been used to evaluate tidal energy resources in the area in support of a community backed renewable energy project. 
 
Title FVCOM-FABM-ERSEM output for the UK 
Description FVCOM-FABM-ERSEM model run for the period 2005 to 2015. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? No  
Impact This model simulation represents both the longest continuous FVCOM simulation as well as the first with a stable FVCOM-FABM-ERSEM configuration at this scale. 
 
Title Fish in FABM-ERSEM 
Description Ongoing development to add a generic fish compartment in FABM-ERSEM 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact None yet. 
 
Title Flexible structure for material deposition in ERSEM 
Description Implemented flexible structure for material deposition in ERSEM, allowing arbitrary number of deposition targets defined by model user. Previously this split into benthic organic matter was hardcoded, while new structure is more flexible, allowing partitioning into any number of benthic pools in any proportion. 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact New structure allows more flexibility from the user side, better tailoring model structure to research questions. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/edge/ersem/
 
Title Formulation of carbonate chemistry dynamics in ERSEM benthic model 
Description Three-layer ERSEM benthic model (the so-called Oldenburg model) was extended to account for pelagic-benthic fluxes of alkalinity and, subsequently to allow calculation of pH in sediment pore waters. Additionally, simple parameterisation of calcification by zoobenthos was implemented. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Extending ERSEM model to allow calculation of benthic carbonate chemistry is important for research of impacts of pH changes on benthic organisms in the context of ocean acidification and potential leakage from CCS sites. 
 
Title Framework for increased zooplankton diversity in biogeochemical ecosystem models (Jellyfish) 
Description New framework to add diversity to grazers and predators in ecosystem model. The framework allows for inclusion of Jellyfish. 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? No  
Impact Presented at Academic meeting with indication of possible uptake by the wider community, with collaborations. 
 
Title Future Projection of North Atlantic ecosystem 
Description Future changes of the lower trophic level of the North Atlantic ecosystem projected for the years 1971-2099 under climate change scenario AR5 RCP8.5. 
Type Of Material Database/Collection of data 
Year Produced 2014 
Provided To Others? Yes  
Impact Ecosystem assessment of climate change impacts on the marine ecosystem from biogeochemistry to fishes and ecosystem services. 
 
Title GHG prodcution from Shellfish 
Description The ShellSIM model has been updated to estimate production of methane and nitrous oxide from Shellfish 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? No  
Impact this model will allow the assessment of the GHG production from aquaculture farms 
 
Title Grazing response to microplastic presence in copepods 
Description Small model describing the impact of microplastic on the grazing of copepod taking into account the possibility of various response from the animal and tracking impact on the growth/reproductive capacity of the animal 
Type Of Material Data analysis technique 
Provided To Others? No  
Impact The model is to be included within a marine ecosystem setting (ERSEM) in order to track impact of microplastic on biogeochemical cycles and system productivity. 
 
Title Gulf of Guinea hydrodynamic-ecosystem model outputs 
Description Projections of environmental conditions in the Gulf of Guinea, 1970-2099, created using a coupled hydrodynamic-ecosystem model, POLCOMS-ERSEM driven by three regionally-downscaled models from the CMIP5 set (CanESM2, CNRM-CM5 and HadGEM2-ES). Model outputs include temperature, salinity, current speeds, sea surface elevation, nutrients, plankton and bacterial biomass, primary production and pH. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
Impact The model outputs will be useful to researchers studying the impacts of climate change, including sea level rise, in this densely populated area. Examples include work on fisheries management and flood risk. 
 
Title High Resolution FVCOM model implementation in the SW UK coast for coastal research 
Description Implementation of FVCOM-FABM-ERSEM in the SW coast of the UK from Par Sands to Portland. The model includes the major estuaries in the region (e.g. Tamar, Teign, Exe) with a nominal resolution of 40m in the horizontal. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact This model will be used to address a wide range of topics, from the transport and accumulation of microplastics to the suitability of aquaculture activities in Lyme Bay. While the model domain has been finalised we are still in the process of generating multi-year simulations and validating the model results. 
 
Title Hindcast and projections for the North East Atlantic, North Sea and Mediterranean 
Description Physical and hydrodynamic outputs from a POLCOMS-ERSEM model for European regional seas, 1970-2099 using climate model MPI-ESM-LR for RCPs 4.5 and 8.5. The outputs include temperature, salinity, current speeds, sea surface elevation, nutrients, plankton and bacterial biomass, primary production and pH. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact Outputs are being used by researchers in several European countries to investigate the impact of climate change on future fish catch and aquaculture production. 
 
Title Hindcast for the North Atlantic marine ecosystem 
Description Important ecosystem indicators for the lower trophic level of the North Atlantic ecosystem, 
Type Of Material Database/Collection of data 
Year Produced 2014 
Provided To Others? Yes  
Impact Data distributed to other research groups to assess current status of marine ecosystem from biogeochemistry to fishes and ecosystem services. 
 
Title Implementation of GOTM-ERSEM at various locations on UK shelf 
Description A GOTM-ERSEM 1D model has been implemented for: Station E1 in the Western Channel Observatory, the Candyfloss station in the Central Celtic Sea, Liverpool Bay and a station in the North Sea for the time period 2008-2017. 
Type Of Material Computer model/algorithm 
Year Produced 2019 
Provided To Others? No  
Impact The models are currently being used to test the impact of meteorological resolution on phytoplankton phenology and assessment of ERSEMs ability to capture inter-annual variability in shelf seas as part of the CAMPUS project. The model setups have already been used and will likely further be used by other researchers to test model developments and process understanding at these data rich sites. 
 
Title Improved iron formulation in ERSEM 
Description A new model formulation describing variable iron scavenging rate and bacterial iron uptake has been developed and now is ready to be implemented in the ERSEM code for testing 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Not impacts yet 
 
Title Jellyfish habitat model 
Description Model of jellyfish habitat showing likelihood of a jellyfish bloom based on environmental conditions 
Type Of Material Computer model/algorithm 
Year Produced 2019 
Provided To Others? No  
Impact Potential for developing a warning system regarding occurrence of jellyfish bloom. 
 
Title MEDUSA in FABM 
Description Biogeochemical model MEDUSA (Yool et al, 2013) was incorporated into Framework for Aquatic Biogeochemical Models (FABM). The model was tested in a coupled mode with GOTM, MEDUSA 1D and global (ORCA2) configurations. FABM code was compared with original implementation in terms of similarity of output and performance. In 1D NEMO configuration results were identical within double numerical precision, and in 3D within single precision. In terms of timing, FABM version showed 6-17% overhead compared to original implementation, depending on configuration. For technical reasons, comparison was performed with fixed carbonate system and without slow detritus sinking. 
Type Of Material Computer model/algorithm 
Year Produced 2019 
Provided To Others? No  
Impact No impacts yet. 
URL http://gitlab.ecosystem-modelling.pml.ac.uk
 
Title Marine biogeochemical model validation using emergent properties 
Description We performed a marine biogeochemical model validation exercise using emergent properties. These tools were published in a GMD work, and shared with other scientists. 
Type Of Material Data analysis technique 
Year Produced 2015 
Provided To Others? Yes  
Impact These methods can be used in the absence of long term time series data, and have been used to analyise model behaviour. 
 
Title Methane and nitrous oxide cycles in ERSEM 
Description ERSEM model configuration with description of methane and nitrous oxide dynamics. This model version includes cycling of methane utilising hypothesis of production in anoxic micro-niches and production of nitrous oxide as a by-product of nitrification, formulation of air-sea fluxes. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Model results are communicated at various workshops/meetings dedicated to GHG dynamics and impacts. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/edge/ersem/commits/ghg_v0
 
Title Methane cycle in ERSEM 
Description Parameterization of pelagic cycle of methane was added to ERSEM in order to be applied further in 3D context to estimate air-sea exchange. Initially formulation includes three main components: a) air-sea exchange, b) methane production in zooplankton guts and its excretion into water, c) methane oxidation. 
Type Of Material Computer model/algorithm 
Year Produced 2016 
Provided To Others? Yes  
Impact This work is the basis for further estimates of air-sea fluxes of methane on the North-Atlantic Shelf area, using 3D model. 1D model results will be evaluated using methane measurement data from WCO L4 station. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/edge/ersem/tree/feat/methane
 
Title Model Simulations at BATS 
Description The European Regional Seas Ecosystem Model (ERSEM) was implemented at the BATS site in the Sargasso Sea. The model was run with and without the formulation describing viral lysis on phytoplankton. Simulation were compared with in situ primary production (C14) data 
Type Of Material Computer model/algorithm 
Year Produced 2019 
Provided To Others? No  
Impact This exercise provided a preliminary assessment of the effect of the current parameterization of phytoplankton lysis on model primary production 
 
Title Model describing the nutrient-dependent production of recalcitrant dissolved organic carbon 
Description By combining previously published model formulations (Polimene et al., 2006 and 2015) we have developed a theoretical modelling framework able to simulate the variability of the Biological Carbon Pump (sinking of particles) to Microbial Carbon Pump (bacterial production of recalcitrant DOM) ratio as function of external nutrient availability 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Outcomes of this model have been published on journal of Plankton Research 
 
Title Model formulation describing N-osmolyte dynamics 
Description A new model formulation describing N-osmolytes compounds production and fate has been implemented in ERSEM 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Although results are still preliminary, the above cited model provided the first numerical simulation describing N-osmolyte seasonal cycle in the Western English Channel (L4 site) 
 
Title Model simulating cyanobacteria growth dynamics in a chemostat 
Description The primary producers module of the European Regional Seas Ecosystem Model has been adapted to simulate growth dynamics of cyanobacteria in a chemostat. The model is meant to reproduce different cellular physiological conditions (e.g. nutrient and light limitation) and to relate them to the mortality rate induced by viral infection 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? No  
Impact The model will be used to develop a robust (experimentally based) formulation describing the effect of the host nutritional status on viral infection. 
 
Title Model simulations of nitrous oxide and methane dynamics 
Description Decadal simulations (starting at 2000) with NEMO-ERSEM including nitrous oxide and methane cycles over the North-Western Atlantic Shelf (AMM7 domain). 
Type Of Material Database/Collection of data 
Provided To Others? No  
Impact Simulations performed allow estimates of air-sea fluxes of important greenhouse gases and contribution of the modelled area with respect to global emissions. Spatiotemporal scale of model results allows detailed comparison with existing estimates of saturations, air-sea fluxes and total emissions, which are mainly measurement-based, and temporally and spatially limited. 
 
Title Model trophic structure 
Description Set of various combination of predator to investigate impact of the food web structure within an ecosystem model on its intrinsic properties. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact N/A 
 
Title Modelled impact of MPA on recovery of benthic communities from trawling 
Description Several trawling exclusion areas were introduced into NEMO-ERSEM AMM7 model setup with trawling impacts. Model was run for the period 2006-2015. Recovery of benthic fauna within MPAs and in adjacent areas was analysed. 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? No  
Impact The work has potential impact on future policy and management decisions regarding regulations of trawling activity. 
 
Title Modelling benthic macrofaunal diversity on the North West European Shelf 
Description Spatiotemporal dynamics of benthic macrofaunal diversity on the North West European Shelf was investigated using NEMO-ERSEM model for a 20-year period. The model was parameterised implementing six subgroups of benthic macrofauna with differing feeding modes, diet preferences and physiological rates, based on 1D experiments representing L4 station. The model was initiated with spatially uniform distributions of each group to study adjustment of communities to the governing conditions of physical environment and food supply. Distribution of biomasses of various groups and biodiversity indices were analysed for a set of stations. Outcomes of this work were presented at MERP final science meeting and EGU General Assembly 2018. 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? No  
Impact No specific impacts yet. 
 
Title Modelling growth and toxic compounds production in microalgae 
Description A new model, describing cellular toxin production and fate, was developed and incorporated in a simplified version of the European Regional Seas Marine Ecosystem Model (ERSEM) . More specifically, toxin production was assumed to be composed by two distinct additive terms: the first is constant and is assumed to take place under any physiological conditions while the second is assumed to be dependent on cellular nutrient deficiency 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact With this model we have tested the hypothesis that toxin production in marine microalgae is stimulated by nutrient deficiency. Model simulations were able to reproduce the temporal evolution of biomass, chlorophyll, nutrient and toxins observed in cultures of the dinoflagellate Ostreopsis ovate. These results allowed us to support the above mentioned hypothesis. This work (carried out in collaboration with the University of Bologna, Italy) is a first step toward the explicit simulation of toxicity in the context of harmful algal blooms (HABs). Model results were presented as poster at the IV AMEMR (Plymouth, 30 June-3 July) and is the object of a paper in preparation. 
 
Title Modular version or ERSEM (FABM-ERSEM) 
Description A new, modular version of the European Regional Seas Ecosystem Model (ERSEM) has been implemented in the Framework for Aquatic Biogeochemical Models (FABM). This model allow plug-and-play combination of different biological modules, thus supporting a hierarchy of models of different complexity. The new model will serve as the basis for future model development at PML, supporting among others the Shelf Seas Biogeochemistry (SSB) program and Marine Ecosystem Research Program (MERP). 
Type Of Material Computer model/algorithm 
Year Produced 2014 
Provided To Others? Yes  
Impact The work is central in ongoing collaboration with the Norwegian Institute for Water Research (NIVA), and has led to PML being invited to participate in a proposal targeting coupled hydrodynamic-biogeochemical modelling of the Iranian Lake Urmia. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/jbr/fabm-ersem
 
Title N-osmolyte model developments 
Description Model formulation describing N-osmolyte dynamic was modified by assuming a positive feedback of these metabolites on growth and fitness of dinoflagellates under nutrient stress condition. 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? No  
Impact The new model improved the simulations of N-osmolytes and phytoplankton types succession in the transition between spring and summer. The combined analysis of data and model simulations allowed to put forward a new hypothesis on the physiological role of N-osmolytes in phytoplankton 
 
Title NE Atlantic data for the OPEC portal 
Description Model outputs for the North East Atlantic for 1991 to 2013 
Type Of Material Database/Collection of data 
Year Produced 2014 
Provided To Others? Yes  
Impact The data is available to all via a web-based portal - it is intended to be useful to both researchers and ecosystem managers. 
URL http://portal.marineopec.eu/
 
Title NEMO-ERSEM model interface updates 
Description Updates for the NEMO-ERSEM interface version 3.4 and updates for the NEMO-ERSEM shelf coupler 
Type Of Material Computer model/algorithm 
Year Produced 2014 
Provided To Others? Yes  
Impact Updates supplied to the modelling groups at NOC and UKMO. 
 
Title NEMO-FABM 1D configurations 
Description Standard test case of 1D NEMO model configuration (station PAPA, 50N, 144W, depth ~4220 m) was coupled with biogeochemical models ERSEM and MEDUSA via FABM framework. To the best of our knowledge, this is the first implementation of 1D NEMO coupled with biogeochemistry. Configuration files for biogeochemical models are available via PML gitlab server. 
Type Of Material Computer model/algorithm 
Year Produced 2019 
Provided To Others? No  
Impact No impacts so far. 
URL http://gitlab.ecosystem-modelling.pml.ac.uk
 
Title NEMO-FABM-ERSEM coupler 
Description Interface for linking of last stable releases of ERSEM (16.06) and NEMO (3.6). 
Type Of Material Computer model/algorithm 
Year Produced 2016 
Provided To Others? Yes  
Impact Model infrastructure for operational system of the UK Met Office, NERC's Shelf Seas Biogeochemistry and Marine Ecosystem Program, ReCICLE, CMEMS (NOWMAPS) and various other applications. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/nemo-fabm/NEMO-ERSEM-shelf
 
Title New model formulation describing Dissolved Organic Carbon (DOC) degradation time scales 
Description This formulation describes the continuum spectrum of degradation scales associated to marine DOC by considering a single DOC state variable and an associated degradation function. The degradation function is assumed to be dependent on DOC production and bacterial degradation 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? No  
Impact This formulation is meant to provide a computationally effective tool to implement DOC in large-scale marine ecosystem and climate models. A manuscript describing the new model has been submitted to National Science Review 
 
Title Nitrous oxide in northwest European continental shelf sea - time-varying atmospheric partial pressure 
Description NEMO-ERSEM model with nitrous oxide fluxes included was applied for the AMM7 domain, with time-varying (monthly mean) values of atmospheric partial pressure for nitrous oxide. Model results represent database of N2O concentrations and air-sea fluxes over the period of 2000-2016, with results validated against cruise measurement data. Manuscript discussing model results and analysing factors controlling nitrous oxide air-sea fluxes is currently in preparation. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? No  
Impact This is, to our knowledge, first regional-scale model implementation with process-based formulation of nitrous oxide production and air-sea fluxes. Carefully validated, it a) upscales temporally and spatially sparse measurement data, b) allows analysis of controlling factors and therefore management options, c) creates basis for further development and wider implementation of regional-scale models of nitrous oxide, reducing uncertainty in greenhouse gas emission estimates. 
 
Title OD and 1D ERSEM test configurations 
Description Test configurations of model for the water column and box-model for various sites. 
Type Of Material Computer model/algorithm 
Year Produced 2014 
Provided To Others? Yes  
Impact Model distribution to beginner users. 
URL http://www.shelfseasmodelling.org
 
Title Operational model system for FVCOM-WRF-River models 
Description An system to run operational forecast models using FVCOM coupled with WRF and the neural net river model. The system is built using the ROSE suite scheduling system, with tasks implemented using variously python and bash. 
Type Of Material Computer model/algorithm 
Year Produced 2018 
Provided To Others? No  
Impact Operational models of the west UK shelf and the Tamar estuary, currently only available internally but soon to be published 
 
Title PML-Data Assimilation-1D 
Description Data assimilation system based on the Ensemble Kalman Filter for the 1-dimensional GOTM-ERSEM model 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact This modelling system is a simpler prototype of the full 3D Data assimilation model described elsewhere. The model system allows more thorough investigation of the impact of different observable variables on the evolution and behaviour of marine ecosystems. We will be studying the impacts of assimilation of hydrodynamic related variables on the ecosystem model. 
 
Title POLCOMS-ERSEM implemenations for European Regional Seas 
Description Implementation of POLCOMS-ERSEM models in the European Regional Seas: Mediterranean, UK shelf seas, North Sea, Baltic, laong with forcing datasets for the present day and two future scenarios. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Model outputs are enabling work under the Framework 7 project "Vectors of Change in Oceans and Seas Marine Life, Impact on Economic Sectors". For example, this work includes investigation of future spread of invasive species in the Mediterranean and a new approach to spatial planning in the North Sea. 
 
Title Parameterization of zoobenthic response to low pH in ERSEM benthic model 
Description Zoobenthic functional groups of suspension-feeders and deposit-feeders were divided into tolerant and sensitive sub-groups according to their uptake response to stress induced by low pH. These responses summarize variable strategies implemented by zoobenthos and reported in the recent literature. Each subgroup exerts three stages of response to low pH: decreased uptake due to pH stress, shutting-down (no uptake) and increased morality rates at extremely low pH. Tolerant group remains more active at lower pH compared to sensitive one. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact This work allows for simulation of responses in zoobenthic activity to low pH in the context of ocean acidification or potential leakage of carbon dioxide from CCS sites. Formulation of responses was implemented in consultation with experimental scientists and thus fosters collaboration between modelling and experimental scientific communities. Furthermore, there is a potential to extend current formulation for more general research of zoobenthic reaction to environmental stress. 
 
Title Projections for physical and biogeochemical conditions in the Bay of Bengal to 2098, using 3 CMIP5 climate models 
Description Outputs from a coupled hydrodynamic-ecosystem model driven by three regionally-downscaled models from the CMIP5 set (CMRM-CM5, GFDL-CM3, HadGEM2-ES). The outputs include temperature, salinity, current speeds, sea surface elevation, nutrients, plankton and bacterial biomass, primary production and pH. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? Yes  
Impact The model outputs will be useful to researchers studying the impacts of climate change, including sea level rise, in this densely populated area. Examples include work on fisheries management and flood risk. 
 
Title PyLag - A tool for modelling particle transport and dispersion in the the marine environment 
Description PyLag is a new particle tracking tool that is written in a mixture of the programming languages Python and Cython. Written using object orientated design principles, it is readily extensible, and can in principle simulate the transport of a range of different particulates, ranging from marine pollutants such as microplastics, to fish larvae. It presently includes support for two different hydrodynamic models: FVCOM and GOTM. However, it is relatively easy to add support for different hydrodynamic models, and it is anticipated support for NEMO will be added in the near future. The model has also been parallelised, and can be used on both desktop computers and modern super computers. 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact The model has been used to simulate the transport and dispersal of microplastics around the SW UK coastline, and used to inform field sampling work. Outputs from the model have been used as background material in two Masters projects on microplastics. The model is currently being used by a PhD student at the University of Exeter to simulate the dispersal of Sea Fan larvae. It has also been used to simulate the dispersal of dredged material from various proposed dumping sites near to Plymouth, with results presented to both Cefas and the Marine Management Organisation. 
URL http://www.pml.ac.uk/Modelling/Models/Physical_models_and_couplers
 
Title PyLag-tools - A plotting library for analysisg PyLag model outputs 
Description PyLag-tools provides a set of classes and functions to help with plotting and analysing output from the particle tracking tool PyLag. It is written in Python and is stored under version control in a git repository hosted by PML. 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact The tool has been used by a PhD student at the University of Exeter in his project looking at the dispersal of sea fan larvae, and to produce plots for Masters students, who then incorporated these into their theses. 
URL http://www.pml.ac.uk/Modelling/Models/Physical_models_and_couplers
 
Title Reanalysis of the biogeochemistry of the North East Atlantic 
Description This is the output of the reanalysis of the biogeochemistry of the North East Atlantic in the years 1998-2014 carried out by means of the assimilation system EnKF_ERSEM The data base is described in Ciavatta et al., 2016, Journal of Geophysical Research, DOI: 10.1002/2015JC011496 
Type Of Material Database/Collection of data 
Year Produced 2015 
Provided To Others? Yes  
Impact The database has been used as input to an aquaculture model in the framework of the NERC project ROSA; The output has been used at NOC for comparison/interpretation of ocean observations of physical and biogeochemical variables from buoys and gliders; The database is in use by a student of the University of Southampton for his bachelor project 
URL http://portal.ecosystem-modelling.pml.ac.uk
 
Title Resuspendable fluff layer in ERSEM 
Description A formulation of fluff layer was added to ERSEM model. It represents a layer of freshly sedimented, unconsolidated, easily resuspendable organic matter. It is also available as a food-source to filter-feeding zoobenthos. First-order kinetics of incorporation into consolidated sediment organic matter is implemented. 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact Improvement of model performance primarily in shallow coastal regions. Further possibilities for collaborations for improvement of benthic-pelagic coupling in the model. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/edge/ersem/tree/V1/SAFE
 
Title Sensitivity test of OA impacts 
Description I used the 12D model GOTM to assess the consequences on major ecosystem properties of the interaction among potential OA impacts on different trophic level 
Type Of Material Database/Collection of data 
Year Produced 2015 
Provided To Others? Yes  
Impact the work has been presented to the final meeting of the NERC UKOA program, attended by scientists as well as regulators It will be also presented at meeting of the GLobal Ocean Acidification Observing Network 
 
Title ShellSIM-Fortran 
Description the ShellSIM model for simulation of shellfish growth and aquaculture activity has been recoded in Fortran under the Framework for Aquatic Biogeochemical Models 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact this new version of the model allow for a seamless coupling with biogeochemical models like ERSEM 
 
Title Simulation of benthic macrofauna dynamics at Station L4 of the Western Channel Observatory 
Description Canonical model of benthic macrofauna based on ERSEM components was created to simulate dynamics of benthic macrofauna at Staion L4 in response to phytoplankton bloom dynamics. The model was used to estimate typical response times of macrofauna, as well as roles of functional types in ecosystem functioning. Manuscript describing this model and its results is currently in revision. 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? No  
Impact The main impact is influence on further integration of different research tools and methods to foster understanding of marine ecosystems. 
 
Title Simulation of the sysonal cycle of N-osmolytes in the Western English Channel (L4 station) and comparison with observations 
Description Model simulation describing N-osmolytes in the Western English Channel. The simulation includes the year 2016 in which observational data were available for comparison 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? No  
Impact This is the first N-osmolyte simulation carried out with a complex marine ecosystem model (ERSEM). The analysis of the simulation and the comparison with the data allowed a mechanistic interpretation of the dynamics underpinning N-osmolyte seasonality. A manuscript is in preparation. 
 
Title Simulations of benthic macrofaunal diversity in the northwest European shelf seas 
Description NEMO-ERSEM model with diversified benthic macrofauna structure was implemented to simulate dynamics of biodiversity within northwest European continental shelf sea during 2000-2016. Model results allow to analyse how physical forcing and hydrodynamic conditions shape biodiversity structure, which in turn affects biogeochemical cycling within the sea. Model results are currently analysed against available observational data. 
Type Of Material Database/Collection of data 
Year Produced 2018 
Provided To Others? No  
Impact These results allow to analyse how physical environment shapes marine biodiversity, which in turn affects biogeochemistry. This will further allow to analyse impacts of disturbance and climate change on biodiversity and marine ecosystem services in general. 
 
Title Size and trait based zooplankton 
Description Framework combining size and trait based modelling for zooplankton representation within FABM-ERSEM. The framework has been developed to represent copepod and jellyfish, with a varying number of size class within each group, and accompanying equation to alter targeted rate and trophic interactions. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact N/A 
 
Title Stoichiometric Modulation of Predation (SMP) 
Description The formulation describing the dependency of the zooplankton ingestion and assimilation efficiency on the "food quality" of the prey (Stoichiometric Modulation of Predation SMP, Mitra 2006) has been inserted in ERSEM. Equations 3-5, 8, 9 and 10 of Mitra (2006) have been adapted (accounting for the multi nutrient dynamic explicitly resolved in ERSEM) and incorporated in to the microzooplankton formulation of ERSEM 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Model simulations carried out with the new model (ERSEM+SMP) suggested that after the onset of the proper physical conditions (i.e reduced turbulence and mixed layer depth), phytoplankton decrease in palatability and the subsequent decrease in grazing activity play a significant role in the formation of a bloom. The main output of this work is a conceptual model synergistically combining the abiotic and biotic processes potentially concurring to a phytoplankton bloom formation (Polimene et al., submitted to Progress in Oceanography). 
 
Title UK river modelling for hi-res hydrodynamic model forcing 
Description An application of neural network and other techniques to model river inputs for high resolution coastal models using meteorological variables produced by the WRF model. Training data collated from a variety of public sources. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact Improve implementation of high resolution LOCATE FVCOM model, especially estuarine circulation. A version of this river model is being prepared to be made available for other research groups. 
 
Title Update of ERSEM formulation on benthic organic matter resuspension 
Description Model formulation of resuspension of benthic semi-labile organic matter was updated to explicitly account for vertical distribution of organic matter in sediments. This improves previous formulation based on concentration of benthic organics and makes use of information available to the model allowing only the uppermost layer of organics to be resuspended at each time instance. 
Type Of Material Computer model/algorithm 
Year Produced 2015 
Provided To Others? Yes  
Impact Improvement of model results on resuspension and consequently on fluxes and transport of particulate and dissolved material. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/edge/ersem
 
Title Validation of the bacteria module of ERSEM 
Description An ad-hoc experiment has been carried out to validate the bacteria-DOM module of ERSEM. The model demonstrated skills in reproducing DOM degradation dynamics observed in the experiments. 
Type Of Material Database/Collection of data 
Year Produced 2017 
Provided To Others? Yes  
Impact The outcomes of this exercise have been published in Plos One (Polimene et al., 2017). Both experimental data and model simulations have been included in the above mentioned (open access) publication 
URL http://dx.doi.org/10.1371/journal.pone.0171391
 
Title Vertically Structure Benthic Model 
Description An explicitly described vertically discretised benthic model has been developed to better resolve chemical gradients and biological response. 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact A model based on a more explicit representation of the benthic ecosystem has been developed. Providing an improved ability to explicitly represent processes, compare to observations and resolve sediment chemical gradients this model provides the basis for a number of upcoming studies (as part of MERP, SSB) and is freely available upon request from the author or as a git-repository. 
 
Title Zooplankton traits 
Description Collection of data regarding traits of zooplankton to later develop a trait based approach for expanding representation of zooplankton in FABM-ERSEM in order to improve diversity and representation of key functions. 
Type Of Material Database/Collection of data 
Provided To Others? No  
Impact Improved communication and linkage with the experimentalist community. 
 
Title fabm-mizer: size-based fish modelling in FABM 
Description Implementation of fish model "mizer" (https://dx.doi.org/10.1111/1365-2664.12238) in the Framework for Aquatic Biogeochemical Models (http://fabm.net). The model is specifically designed to be compatible with ERSEM, and to support two-way ERSEM-mizer coupling in spatially explicit (1D, 3D) systems. 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? Yes  
Impact This model underpins the modelling of future fish catch projections for the Food and Agriculture Organization, in support of their 2018 update of technical paper 530 (tentative title "Impacts of climate change for Fisheries and Aquaculture") 
 
Title processed ADCP dataset collected during the SMILES cruise in April-May 2015 
Description Processed ADCP dataset from SMILES cruise JR311 
Type Of Material Database/Collection of data 
Year Produced 2015 
Provided To Others? Yes  
Impact The data have been used in the preparation of several manuscript at the University of Plymouth and Cambridge University 
 
Title pydeb: a high performance implementation of the Dynamic Energy Budget model 
Description High performance implementation of Dynamic Energy Budget model equations in Python and C 
Type Of Material Computer model/algorithm 
Year Produced 2017 
Provided To Others? Yes  
Impact Supports functionality of Trait Explorer, http://www.marine-ecosystems.org.uk/Trait_Explorer 
 
Title trawling effort 
Description Forcing files of bottom trawling effort have been assembled using data provided by CEFAS 
Type Of Material Computer model/algorithm 
Provided To Others? No  
Impact these files are being used to run scenarios simulation on the impact of bottom trawling on Carbon cycling 
 
Description Bangor University 
Organisation Bangor University
Country United Kingdom 
Sector Academic/University 
PI Contribution Model results generated by me have been analysed by James Waggit at Bangor to help interpret the behaviour of seabirds.
Collaborator Contribution Paper manuscripts.
Impact Two peer-reviewed papers so far with a third in the works. Multiple conference presentations.
Start Year 2013
 
Description Biogeochemistry of the benthic zone and implications for marine ecosystems - EGU session 
Organisation University of Liege
Country Belgium 
Sector Academic/University 
PI Contribution A session on biogeochemistry of the benthic zone and implications for marine ecosystems is regularly organised at EGU General Assembly held annually in Vienna. It attracts researchers from various backgrounds - both modellers and experimentalists - to share progress in benthic zone research in oral and poster presentations. Each year prominent speaker is invited to give a keynote talk.
Collaborator Contribution This EGU session will focus on recent outcomes in the understanding of processes controlling benthic biogeochemical cycling and ecosystem dynamics, implementation of new experimental setups and data collection techniques, novel benthic model developments and efforts addressing the implications of benthic-pelagic coupling at a shelf and basin scale. Contributions related to the following non-exhaustive list of sub-topics are particularly encouraged: lability of benthic organic matter, microscale interactions (e.g. microenvironments, burrows, cable bacteria), microphytobenthic primary production, experimental setups and novel data collection techniques (e.g. fixed benthic observatories, eddy-covariance applications), permeability spectrum, extreme and episodic events and ecosystem recovery, erodability and response to resuspension, diversity of benthic habitats.
Impact Ongoing collaboration. No specific outcome yet.
Start Year 2016
 
Description Building a network of industry, government, and third sector organisations with a vested interest in marine (micro)plastic pollution 
Organisation Department For Environment, Food And Rural Affairs (DEFRA)
Department Marine Management Organisation (MMO)
Country United Kingdom 
Sector Public 
PI Contribution Established links and connections with members of the aforementioned organisations. Prepared a funding proposal for NERC Innovations proposal.
Collaborator Contribution Engaged with and supported the proposed project.
Impact Prepared a NERC Innovations proposal which was not funded this time round, but which will be resubmitted in a reformed state in 2016.
Start Year 2015
 
Description Building a network of industry, government, and third sector organisations with a vested interest in marine (micro)plastic pollution 
Organisation Department For Environment, Food And Rural Affairs (DEFRA)
Country United Kingdom 
Sector Public 
PI Contribution Established links and connections with members of the aforementioned organisations. Prepared a funding proposal for NERC Innovations proposal.
Collaborator Contribution Engaged with and supported the proposed project.
Impact Prepared a NERC Innovations proposal which was not funded this time round, but which will be resubmitted in a reformed state in 2016.
Start Year 2015
 
Description Building a network of industry, government, and third sector organisations with a vested interest in marine (micro)plastic pollution 
Organisation Fauna & Flora International
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Established links and connections with members of the aforementioned organisations. Prepared a funding proposal for NERC Innovations proposal.
Collaborator Contribution Engaged with and supported the proposed project.
Impact Prepared a NERC Innovations proposal which was not funded this time round, but which will be resubmitted in a reformed state in 2016.
Start Year 2015
 
Description Building a network of industry, government, and third sector organisations with a vested interest in marine (micro)plastic pollution 
Organisation National Foundation for Educational Research (NFER)
Department Futurelab
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Established links and connections with members of the aforementioned organisations. Prepared a funding proposal for NERC Innovations proposal.
Collaborator Contribution Engaged with and supported the proposed project.
Impact Prepared a NERC Innovations proposal which was not funded this time round, but which will be resubmitted in a reformed state in 2016.
Start Year 2015
 
Description Building a network of industry, government, and third sector organisations with a vested interest in marine (micro)plastic pollution 
Organisation University of Exeter
Department Marine Ecology and Conservation Network
Country United Kingdom 
Sector Academic/University 
PI Contribution Established links and connections with members of the aforementioned organisations. Prepared a funding proposal for NERC Innovations proposal.
Collaborator Contribution Engaged with and supported the proposed project.
Impact Prepared a NERC Innovations proposal which was not funded this time round, but which will be resubmitted in a reformed state in 2016.
Start Year 2015
 
Description Collaboration with Akvaplan-NIVA on modelling tools and FVCOM modelling approaches 
Organisation Norwegian Institute for Water Research (NIVA)
Country Norway 
Sector Public 
PI Contribution The FVCOM modelling group in PML has been collaborating with the Akvaplan-NIVA branch of NIVA during the last two years. In this period we have developped modelling tools (fvcom matlab toolbox and PyFVCOM python toolbox) that are routinely used by their group, and fortran code (fate modelling code of antiparasitic substances used in salmon fishfarms) to enhance the capabilities of FVCOM modelling suite.
Collaborator Contribution Akvaplan-NIVA have made improvements to FVCOM code related to how rivers are handles and a more accurate advection scheme which we have used in our coupled hydrodynamic-ecosystem FVCOM simulations.
Impact FVCOM model domain and setup for the Hardangerfjorden in Norway. One year simulation of the Hardangerfjorden hydrodynamics and the fate of organic matter and antiparastic substances resulting from the operation of 5 fish farms in the central section of the fjord.
Start Year 2017
 
Description Collaboration with CSIC-Vigo 
Organisation Spanish National Research Council (CSIC)
Department Institute of Marine Sciences
Country Spain 
Sector Public 
PI Contribution I have been collaborating with the Instituto de Ciencias Marinas in Vigo since 2006. We have shared instrumentation, collaborated on national projects and published results together. I have contributed with instrumentation for observational studies in the Ria de Vigo as well as in the Canary islands. I have analysed results collected from those instrumentations. I have setup a model domain of the Ria de Vigo to simulation tidal currents.
Collaborator Contribution CSIC-Vigo has contributed with observations in the Ria de Vigo for model validation and model setup (atmospheric and river flux observations and detailed bathymetry, current meter records).
Impact FVCOM model domain and setup for the Ria de Vigo Long-term ADCP current meter data observations and tidal harmonics analysis in the Ria de Vigo.
Start Year 2006
 
Description Collaboration with NIVA on CCS impact and redox modelling 
Organisation Norwegian Institute for Water Research (NIVA)
Country Norway 
Sector Public 
PI Contribution Provided GETM 3D model outputs on temperature and salinity from southern Baltic Sea to NIVA modellers for forcing BROM model. Continuous collaboration with a special focus on Fe cycle in the model.
Collaborator Contribution The data will be used to set up 1D BROM model with an aim to study potential biogeochemical and ecological impacts from CCS leakage in the Baltic Sea.
Impact This is part of on-going collaborations with NIVA on hydrodynamic and biogeochemical modelling, with a focus on benthic biogeochemical processes and redox chemistry and research of potential environmental impacts from sub-seabed CCS.
Start Year 2015
 
Description Collaboration with Xiamen University (China) on Modelling The Microbial Carbon Pump 
Organisation Xiamen University
Country China 
Sector Academic/University 
PI Contribution I have developed a model formulation to simulate the bacterial production of recalcitrant DOM as function of external nutrient concentration This process is at the base of the Microbial Carbon Pump concept developed by Prof N. Jiao at Xiamen University
Collaborator Contribution Colleagues at Xiamen University invited me to visit their laboratory to share data and ideas to further develop my model
Impact A joint talk at the next Advanced Marine Ecosystem Modelling Research (AMEMR) symposium (Plymouth 3-6 July 2017) Title of the talk: "Are we able to model the microbial carbon pump? Current state and future directions"
Start Year 2016
 
Description Collaboration with Xiamen University on the theme "microbial carbon sequestration" (International workshop held in November 2018) 
Organisation Xiamen University
Country China 
Sector Academic/University 
PI Contribution MCP project presented to project partner (Xiamen University) in a international wokshop held in China (Xiamen, November 2018)
Collaborator Contribution Xiamen University is one of the world leading institutions in the field of microbial ocean carbon sequestration. They provide useful feedback on how to conduct our experimental work and develop new model formulations.
Impact This collaboration resulted in 4 shared publication (so far).
Start Year 2018
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation Ca' Foscari University of Venice
Country Italy 
Sector Academic/University 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation Helmholtz Association of German Research Centres
Department Helmholtz Centre for Ocean Research Kiel
Country Germany 
Sector Public 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation Italian National Institute of Oceanography and Experimental Geophysics (OGS)
Country Italy 
Sector Public 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation Laboratory of Climate Sciences and the Environment (LSCE)
Country France 
Sector Academic/University 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation Norwegian Institute for Water Research (NIVA)
Country Norway 
Sector Public 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation Royal Netherlands Institute for Sea Research
Country Netherlands 
Sector Academic/University 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation Swedish Meteorological and Hydrological Institute
Country Sweden 
Sector Academic/University 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation University Libre Bruxelles (Université Libre de Bruxelles ULB)
Country Belgium 
Sector Academic/University 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation University of Southern Denmark
Country Denmark 
Sector Academic/University 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Coupled pelagic-benthic models: Challenges and current knowledge gaps 
Organisation Utrecht University
Country Netherlands 
Sector Academic/University 
PI Contribution Following the EUROMARINE funded workshop in May 2015, a network among the participant is established to follow-up the discussion with idea for future collaborative projects.
Collaborator Contribution NIOZ, University of Venice and OGS have contributed in the preparation of the meeting. All partners attended the meeting and are contributing to the paper NIOZ, OGS and GEOMAR are co-chairing the EGU session
Impact A discussion paper is being prepared and a joint session at next EGU AGM will be held to disseminate the outputs. A poster has been presented at last EUROMARINE AGM This is a multidisciplinary network involving marine ecosystem modellers, biogeochemists, biologists and ecologists
Start Year 2014
 
Description Development of NCAR earth system model (ocean biology component) 
Organisation NCAR National Center for Atmospheric Research
Country United States 
Sector Academic/University 
PI Contribution Design of an additional group (zooplankton) for the NCAR earth system model. Analysis of model simulation looking at new food web dynamic, impact on carbon cycle (primary production and export) resulting from the added zooplankton.
Collaborator Contribution Access to NCAR super computer and high resolution model runs for oligotrophic gyres to look at impact in gradient of nutrient on the food web structure.
Impact 2 week visit to NCAR (co-funded by NCAR) to overview the new group implementation and start writing a scientific report on the result as well as discuss further collaboration and possible funding.
Start Year 2013
 
Description EGU General Assembly session on benthic processes and benthic-pelagic coupling 
Organisation Helmholtz Association of German Research Centres
Department Helmholtz Centre for Ocean Research Kiel
Country Germany 
Sector Public 
PI Contribution Co-organisation and co-chairing a session on benthic processes and benthic-pelagic coupling at the annual EGU General Assembly.
Collaborator Contribution Co-organized a session on benthic processes and benthic-pelagic coupling for the EGU General Assembly 2016.
Impact The session in 2016 was jointly organised and 18 abstracts were received. Due to high amount of total abstracts submitted to EGU and very tight schedule, the session was merged with another session, similar, but more general in scope: OS3.1/BG3.8 Ocean biogeochemistry: novel approaches and synthesis. Poster session on benthic-pelagic coupling had a separate subtitle in the programme. In 2017 the session became a part of a bigger session "Biogeochemistry of coastal seas and continental shelves". This effort is a part of on-going collaborative activities on benthic processes and benthic-pelagic coupling research involving modelling, experimental and observational approaches.
Start Year 2015
 
Description EGU General Assembly session on benthic processes and benthic-pelagic coupling 
Organisation Italian National Institute of Oceanography and Experimental Geophysics (OGS)
Country Italy 
Sector Public 
PI Contribution Co-organisation and co-chairing a session on benthic processes and benthic-pelagic coupling at the annual EGU General Assembly.
Collaborator Contribution Co-organized a session on benthic processes and benthic-pelagic coupling for the EGU General Assembly 2016.
Impact The session in 2016 was jointly organised and 18 abstracts were received. Due to high amount of total abstracts submitted to EGU and very tight schedule, the session was merged with another session, similar, but more general in scope: OS3.1/BG3.8 Ocean biogeochemistry: novel approaches and synthesis. Poster session on benthic-pelagic coupling had a separate subtitle in the programme. In 2017 the session became a part of a bigger session "Biogeochemistry of coastal seas and continental shelves". This effort is a part of on-going collaborative activities on benthic processes and benthic-pelagic coupling research involving modelling, experimental and observational approaches.
Start Year 2015
 
Description EGU General Assembly session on benthic processes and benthic-pelagic coupling 
Organisation Royal Netherlands Institute for Sea Research
Country Netherlands 
Sector Academic/University 
PI Contribution Co-organisation and co-chairing a session on benthic processes and benthic-pelagic coupling at the annual EGU General Assembly.
Collaborator Contribution Co-organized a session on benthic processes and benthic-pelagic coupling for the EGU General Assembly 2016.
Impact The session in 2016 was jointly organised and 18 abstracts were received. Due to high amount of total abstracts submitted to EGU and very tight schedule, the session was merged with another session, similar, but more general in scope: OS3.1/BG3.8 Ocean biogeochemistry: novel approaches and synthesis. Poster session on benthic-pelagic coupling had a separate subtitle in the programme. In 2017 the session became a part of a bigger session "Biogeochemistry of coastal seas and continental shelves". This effort is a part of on-going collaborative activities on benthic processes and benthic-pelagic coupling research involving modelling, experimental and observational approaches.
Start Year 2015
 
Description EU - Tipping point 
Organisation Alfred-Wegener Institute for Polar and Marine Research
Country Germany 
Sector Public 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Alternative Energies and Atomic Energy Commission (CEA)
Country France 
Sector Public 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Council of Scientific and Industrial Research (CSIR)
Country South Africa 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Dalhousie University
Country Canada 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation ETH Zurich
Country Switzerland 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Helmholtz Association of German Research Centres
Department Helmholtz-Zentrum Geesthacht
Country Germany 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation International Institute for Applied Systems Analysis
Country Austria 
Sector Charity/Non Profit 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Lancaster University
Country United Kingdom 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Max Planck Society
Department Max Planck Institute for Meterology
Country Germany 
Sector Charity/Non Profit 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Météo France
Country France 
Sector Public 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Nansen Environmental Research Centre (India)
Country India 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Nansen Environmental and Remote Sensing Centre
Country Norway 
Sector Charity/Non Profit 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation National University of Ireland, Galway
Country Ireland 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Norwegian Institute of Marine Research
Country Norway 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Norwegian Polar Institute
Country Norway 
Sector Private 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Potsdam Institute for Climate Impact Research
Country Germany 
Sector Learned Society 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Spanish National Research Council (CSIC)
Department Institute of Marine Sciences
Country Spain 
Sector Public 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Stockholm University
Country Sweden 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Swedish Meteorological and Hydrological Institute
Country Sweden 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation Uni Research AS
Country Norway 
Sector Charity/Non Profit 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation University of Bergen
Country Norway 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation University of Bern
Country Switzerland 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation University of Bremen
Country Germany 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation University of East Anglia
Country United Kingdom 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation University of Exeter
Country United Kingdom 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation University of Gothenburg
Country Sweden 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation University of Hamburg
Country Germany 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation University of Las Palmas de Gran Canaria
Country Spain 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EU - Tipping point 
Organisation École Normale Supérieure, Paris
Country France 
Sector Academic/University 
PI Contribution Contributed to write proposal to respond to a H2020 call on understanding the role and impact of climatic tipping points in the ocean system
Collaborator Contribution they contributed to the proposal lead by university of Bergen
Impact a first stage proposal for H2020 call LC-CLA-20018-2 has been submitted. The partnership is highly multidisciplinary involving chemistry, oceanipgraphy, climate science, ecologist, ecosystem modelling, social science
Start Year 2017
 
Description EUROMARINE workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" 
Organisation Ca' Foscari University of Venice
Country Italy 
Sector Academic/University 
PI Contribution A foresight workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" supported by EuroMarine was organized, which initiated collaborative interdisciplinary community.
Collaborator Contribution A foresight workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" supported by EuroMarine was organized, which initiated collaborative interdisciplinary community.
Impact 1. EGU 2016 session on benthic-pelagic coupling was organised (merged with a session on ocean biogeochemistry due to high amount of contributions to EGU General Assembly). 2. Poster at the EUROMARINE general assembly 2016 3. International multi-disciplinary community on benthic-pelagic coupling was established
Start Year 2015
 
Description EUROMARINE workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" 
Organisation Italian National Institute of Oceanography and Experimental Geophysics (OGS)
Country Italy 
Sector Public 
PI Contribution A foresight workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" supported by EuroMarine was organized, which initiated collaborative interdisciplinary community.
Collaborator Contribution A foresight workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" supported by EuroMarine was organized, which initiated collaborative interdisciplinary community.
Impact 1. EGU 2016 session on benthic-pelagic coupling was organised (merged with a session on ocean biogeochemistry due to high amount of contributions to EGU General Assembly). 2. Poster at the EUROMARINE general assembly 2016 3. International multi-disciplinary community on benthic-pelagic coupling was established
Start Year 2015
 
Description EUROMARINE workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" 
Organisation Royal Netherlands Institute for Sea Research
Country Netherlands 
Sector Academic/University 
PI Contribution A foresight workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" supported by EuroMarine was organized, which initiated collaborative interdisciplinary community.
Collaborator Contribution A foresight workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" supported by EuroMarine was organized, which initiated collaborative interdisciplinary community.
Impact 1. EGU 2016 session on benthic-pelagic coupling was organised (merged with a session on ocean biogeochemistry due to high amount of contributions to EGU General Assembly). 2. Poster at the EUROMARINE general assembly 2016 3. International multi-disciplinary community on benthic-pelagic coupling was established
Start Year 2015
 
Description EUROMARINE workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" 
Organisation Utrecht University
Country Netherlands 
Sector Academic/University 
PI Contribution A foresight workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" supported by EuroMarine was organized, which initiated collaborative interdisciplinary community.
Collaborator Contribution A foresight workshop "A multi-disciplinary consortium approach for advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling" supported by EuroMarine was organized, which initiated collaborative interdisciplinary community.
Impact 1. EGU 2016 session on benthic-pelagic coupling was organised (merged with a session on ocean biogeochemistry due to high amount of contributions to EGU General Assembly). 2. Poster at the EUROMARINE general assembly 2016 3. International multi-disciplinary community on benthic-pelagic coupling was established
Start Year 2015
 
Description Earth System Analysis methods 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Designed and created a set of Earth System analysis methods and sharing this with NOC. The methods enable signal decomposition and biome identification, estimation and validation.
Collaborator Contribution Identification of signal structure: helping to formulate the Atlantic basin climate scale mapping to regional northern Europe based on discussion and analysis of simulation.
Impact Project workshop to discuss identification of system, demo tools and working manual.
Start Year 2016
 
Description Establishment of UK FVCOM interest group 
Organisation Lancaster University
Country United Kingdom 
Sector Academic/University 
PI Contribution We have set up a UK FVCOM interest group that includes representatives from SAMS, NOCL and Marine Scotland. We held our first meeting at PML in September 2012. Since then, we have setup a wiki and SVN repository for sharing common tools related to FVCOM and model implementations to foster collaborations and enhance our understanding of the model's capabilities.
Collaborator Contribution The partners have contributed with intellectual inputs and shared experiences.
Impact The partnership is mostly focused on the use of FVCOM and associated models (wave, sediment and ecosystem models) and provides a platform for exchange of ideas and experiences. As such, this is a multidisciplinary collaboration involving physical oceanography, ecology and ecosystem modelling and numerical methods. We have produced a Wiki (web based how-to manual) where the partners exchange their experiences and solutions to common problems in detail. Improvements to the code and/or analysis tools are also documented here. We also host an SVN repository (version control software) of the FVCOM code together with each partner's updates to the code. The exchange of information has enabled a more robust and consistent approach to implementations of FVCOM in different regions of the UK.
Start Year 2012
 
Description Establishment of UK FVCOM interest group 
Organisation Marine Scotland Science (MSS)
Country United Kingdom 
Sector Public 
PI Contribution We have set up a UK FVCOM interest group that includes representatives from SAMS, NOCL and Marine Scotland. We held our first meeting at PML in September 2012. Since then, we have setup a wiki and SVN repository for sharing common tools related to FVCOM and model implementations to foster collaborations and enhance our understanding of the model's capabilities.
Collaborator Contribution The partners have contributed with intellectual inputs and shared experiences.
Impact The partnership is mostly focused on the use of FVCOM and associated models (wave, sediment and ecosystem models) and provides a platform for exchange of ideas and experiences. As such, this is a multidisciplinary collaboration involving physical oceanography, ecology and ecosystem modelling and numerical methods. We have produced a Wiki (web based how-to manual) where the partners exchange their experiences and solutions to common problems in detail. Improvements to the code and/or analysis tools are also documented here. We also host an SVN repository (version control software) of the FVCOM code together with each partner's updates to the code. The exchange of information has enabled a more robust and consistent approach to implementations of FVCOM in different regions of the UK.
Start Year 2012
 
Description Establishment of UK FVCOM interest group 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution We have set up a UK FVCOM interest group that includes representatives from SAMS, NOCL and Marine Scotland. We held our first meeting at PML in September 2012. Since then, we have setup a wiki and SVN repository for sharing common tools related to FVCOM and model implementations to foster collaborations and enhance our understanding of the model's capabilities.
Collaborator Contribution The partners have contributed with intellectual inputs and shared experiences.
Impact The partnership is mostly focused on the use of FVCOM and associated models (wave, sediment and ecosystem models) and provides a platform for exchange of ideas and experiences. As such, this is a multidisciplinary collaboration involving physical oceanography, ecology and ecosystem modelling and numerical methods. We have produced a Wiki (web based how-to manual) where the partners exchange their experiences and solutions to common problems in detail. Improvements to the code and/or analysis tools are also documented here. We also host an SVN repository (version control software) of the FVCOM code together with each partner's updates to the code. The exchange of information has enabled a more robust and consistent approach to implementations of FVCOM in different regions of the UK.
Start Year 2012
 
Description Establishment of UK FVCOM interest group 
Organisation Scottish Association For Marine Science
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution We have set up a UK FVCOM interest group that includes representatives from SAMS, NOCL and Marine Scotland. We held our first meeting at PML in September 2012. Since then, we have setup a wiki and SVN repository for sharing common tools related to FVCOM and model implementations to foster collaborations and enhance our understanding of the model's capabilities.
Collaborator Contribution The partners have contributed with intellectual inputs and shared experiences.
Impact The partnership is mostly focused on the use of FVCOM and associated models (wave, sediment and ecosystem models) and provides a platform for exchange of ideas and experiences. As such, this is a multidisciplinary collaboration involving physical oceanography, ecology and ecosystem modelling and numerical methods. We have produced a Wiki (web based how-to manual) where the partners exchange their experiences and solutions to common problems in detail. Improvements to the code and/or analysis tools are also documented here. We also host an SVN repository (version control software) of the FVCOM code together with each partner's updates to the code. The exchange of information has enabled a more robust and consistent approach to implementations of FVCOM in different regions of the UK.
Start Year 2012
 
Description Establishment of UK FVCOM interest group 
Organisation University of Strathclyde
Country United Kingdom 
Sector Academic/University 
PI Contribution We have set up a UK FVCOM interest group that includes representatives from SAMS, NOCL and Marine Scotland. We held our first meeting at PML in September 2012. Since then, we have setup a wiki and SVN repository for sharing common tools related to FVCOM and model implementations to foster collaborations and enhance our understanding of the model's capabilities.
Collaborator Contribution The partners have contributed with intellectual inputs and shared experiences.
Impact The partnership is mostly focused on the use of FVCOM and associated models (wave, sediment and ecosystem models) and provides a platform for exchange of ideas and experiences. As such, this is a multidisciplinary collaboration involving physical oceanography, ecology and ecosystem modelling and numerical methods. We have produced a Wiki (web based how-to manual) where the partners exchange their experiences and solutions to common problems in detail. Improvements to the code and/or analysis tools are also documented here. We also host an SVN repository (version control software) of the FVCOM code together with each partner's updates to the code. The exchange of information has enabled a more robust and consistent approach to implementations of FVCOM in different regions of the UK.
Start Year 2012
 
Description GOA-ON Biological Working Group 
Organisation Global Ocean Acidification - Observing Network (GOA-ON)
Country Global 
Sector Public 
PI Contribution I'm participating to this working group of the Global Ocean Acidification - Observing Network providing guidelines on how monitoring program could be best use and inform ecosystem models. UPDATE Feb 2016: I participated the first meeting of the biological working group and contributed to the draft white paper
Collaborator Contribution All partners are experts in the biological/genetic/ecological impact of Ocean Acidification on biota at different levels (from unicellular to big animal) and share their knowledge on this topic
Impact the working group has just been established and we held the first virtual meeting, setting up priorities for outputs. The collaboration is heavily multi-disciplinary with biology, ecology, genetics, ecosystem modelling, being the more important discipline involved.
Start Year 2015
 
Description GOA-ON NE Atlantic HUB 
Organisation Alfred-Wegener Institute for Polar and Marine Research
Country Germany 
Sector Public 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation Centre For Environment, Fisheries And Aquaculture Science
Country United Kingdom 
Sector Public 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation Federal Maritime and Hydrographic Agency of Germany
Country Germany 
Sector Public 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation Helmholtz Association of German Research Centres
Department Helmholtz Centre for Ocean Research Kiel
Country Germany 
Sector Public 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation Marine Biological Association
Country United Kingdom 
Sector Learned Society 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation University of East Anglia
Department School of Environmental Sciences UEA
Country United Kingdom 
Sector Academic/University 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation University of Edinburgh
Department School of Geosciences Edinburgh
Country United Kingdom 
Sector Academic/University 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation University of Exeter
Department Department of Geography
Country United Kingdom 
Sector Academic/University 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation University of Glasgow
Country United Kingdom 
Sector Academic/University 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation University of Gothenburg
Country Sweden 
Sector Academic/University 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation University of Liverpool
Department Department of Earth, Ocean and Ecological Sciences
Country United Kingdom 
Sector Academic/University 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation University of Plymouth
Department School of Biological Sciences and Marine Sciences
Country United Kingdom 
Sector Academic/University 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GOA-ON NE Atlantic HUB 
Organisation University of Southampton
Department Ocean and Earth Science, National Oceanography Centre Southampton
Country United Kingdom 
Sector Academic/University 
PI Contribution Participation to meetings, contribution with knowledge on how use models to integrate observations of the marine carbonate systems, provide model simulations
Collaborator Contribution Provide background knowledge and data on ocean acidification in the north East Atlantic
Impact the collaboration is highly interdisciplinary involving chemical and biological oceanographers, modellers, earth observation scientists as well as stakeholders. The collaboration just started (kick off meeting on 12th-13th March) therefore no concrete output yet
Start Year 2018
 
Description GODAE DA-TT 
Organisation Data Assimilation Task Team (DA-TT)
Country United States 
Sector Public 
PI Contribution Scientific discussion
Collaborator Contribution Scientific discussion
Impact Scientific discussion
Start Year 2015
 
Description GODAE MEAP-TT 
Organisation Marine Ecosystem And Prediction Task Team (MEAP-TT)
Country Canada 
Sector Public 
PI Contribution Scientific discussion on marine modelling/data assimilation; Oral presentation on data assimilation, through skype, at the "MEOPAR/ GOV Marine Ecosystem Analysis and Prediction Workshop", Dalhousie University, Halifax, Canada, 23-24 June 2015
Collaborator Contribution Scientific discussion on marine modelling/data assimilation
Impact Oral presentation on data assimilation, through skype, at the "MEOPAR/ GOV Marine Ecosystem Analysis and Prediction Workshop", Dalhousie University, Halifax, Canada, 23-24 June 2015
Start Year 2015
 
Description Greenhouse Gas UK research community 
Organisation Natural Environment Research Council
Department Centre for Ecology & Hydrology (CEH)
Country United Kingdom 
Sector Academic/University 
PI Contribution The partnership is wider than the three institutions listed and comprise all members of the 3 projects of the NERC Greenhouse Gas programme, I listed the three institutions I have been collaborating more closely. I contributed in writing a white paper highlighting the priorities for future research on greenhouse gas research in the UK (still in prep). I delivered model output to CEH to improve their bottom-up GHG emission estimation model.
Collaborator Contribution Dr. Matt Rigby (University of Bristol) is leading a consortium submitting a proposal for the highlight topic call on "Objective verification of national carbon budgets for assessing climate change mitigation measures". Dr. P. Levy is responsible for the CEH model of bottom-up estimates of GHG emission. All partners contributed to the white paper
Impact A white paper is in preparation, and a proposal is being submitted at the fourth round of the NERC highlight topic call. the partnership is highly multidisciplinary, involving chemistry, oceanography, land, atmosphere and marine science
Start Year 2017
 
Description Greenhouse Gas UK research community 
Organisation University of Bristol
Department School of Chemistry
Country United Kingdom 
Sector Academic/University 
PI Contribution The partnership is wider than the three institutions listed and comprise all members of the 3 projects of the NERC Greenhouse Gas programme, I listed the three institutions I have been collaborating more closely. I contributed in writing a white paper highlighting the priorities for future research on greenhouse gas research in the UK (still in prep). I delivered model output to CEH to improve their bottom-up GHG emission estimation model.
Collaborator Contribution Dr. Matt Rigby (University of Bristol) is leading a consortium submitting a proposal for the highlight topic call on "Objective verification of national carbon budgets for assessing climate change mitigation measures". Dr. P. Levy is responsible for the CEH model of bottom-up estimates of GHG emission. All partners contributed to the white paper
Impact A white paper is in preparation, and a proposal is being submitted at the fourth round of the NERC highlight topic call. the partnership is highly multidisciplinary, involving chemistry, oceanography, land, atmosphere and marine science
Start Year 2017
 
Description Greenhouse Gas UK research community 
Organisation University of Exeter
Department College of Life and Environmental Sciences
Country United Kingdom 
Sector Academic/University 
PI Contribution The partnership is wider than the three institutions listed and comprise all members of the 3 projects of the NERC Greenhouse Gas programme, I listed the three institutions I have been collaborating more closely. I contributed in writing a white paper highlighting the priorities for future research on greenhouse gas research in the UK (still in prep). I delivered model output to CEH to improve their bottom-up GHG emission estimation model.
Collaborator Contribution Dr. Matt Rigby (University of Bristol) is leading a consortium submitting a proposal for the highlight topic call on "Objective verification of national carbon budgets for assessing climate change mitigation measures". Dr. P. Levy is responsible for the CEH model of bottom-up estimates of GHG emission. All partners contributed to the white paper
Impact A white paper is in preparation, and a proposal is being submitted at the fourth round of the NERC highlight topic call. the partnership is highly multidisciplinary, involving chemistry, oceanography, land, atmosphere and marine science
Start Year 2017
 
Description HABs and aquaculture 
Organisation University of Exeter
Country United Kingdom 
Sector Academic/University 
PI Contribution I contributed to write a successful grant to the European Maritime and Fishery Fund and prepare material for stakeholder meetings.
Collaborator Contribution Dr. Brown lead the successful proposal writing and the stakeholder meetings. Prof.Tyler, Dr. Shutler and Dr. Lowe also contributed.
Impact A project proposal has been successfully submitted to the European Maritime and Fishery Fund. The collaboration is multidisciplinary, involving ecosystem modelling, remote sensing, plankton genetic and physiology
Start Year 2017
 
Description ICES Expert Group on Integrative, Physical-biological and Ecosystem Modelling 
Organisation International Council for the Exploration of the Sea (ICES)
Country Denmark 
Sector Charity/Non Profit 
PI Contribution invited member
Collaborator Contribution advances the state-of-the-art in coupled physical-biological and ecosystem modelling worldwide
Impact Submitted manuscript.
Start Year 2012
 
Description International workshop on DOM modelling organised in Plymouth (May 2016) in the framework of the project LOCATE 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution I gave a talk describing DOM modelling in marine system
Collaborator Contribution Talks on different aspects on DOM biogeochemistry and modelling (including terrestrial system) were given by a numbers of internationally recognised experts.
Impact A review paper on DOM modelling in both aquatic and terrestrial systems is in preparation
Start Year 2016
 
Description International workshop on DOM modelling organised in Plymouth (May 2016) in the framework of the project LOCATE 
Organisation Natural Environment Research Council
Department Centre for Ecology & Hydrology (CEH)
Country United Kingdom 
Sector Academic/University 
PI Contribution I gave a talk describing DOM modelling in marine system
Collaborator Contribution Talks on different aspects on DOM biogeochemistry and modelling (including terrestrial system) were given by a numbers of internationally recognised experts.
Impact A review paper on DOM modelling in both aquatic and terrestrial systems is in preparation
Start Year 2016
 
Description LOCATE modelling collaboration 
Organisation Natural Environment Research Council
Department Centre for Ecology & Hydrology (CEH)
Country United Kingdom 
Sector Academic/University 
PI Contribution Attended a project kickoff meeting. Shared model configuration details.
Collaborator Contribution Reciprocated model configuration details.
Impact Model grid descriptions to build better high resolution coupled models.
Start Year 2016
 
Description MARCHEMSPEC: SCOR WG 
Organisation Albert Ludwigs University of Freiburg
Country Germany 
Sector Hospitals 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Carl von Ossietzky University of Oldenburg
Country Germany 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Desert Research Institute
Country United States 
Sector Charity/Non Profit 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Helmholtz Association of German Research Centres
Department Helmholtz Centre for Ocean Research Kiel
Country Germany 
Sector Public 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation INCT Energy and Environment (INCT-E&A)
Country Brazil 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Murdoch University
Country Australia 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation National Science Foundation (NSF)
Country United States 
Sector Public 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Research Center of Patagonian Ecosystems (CIEP)
Country Chile 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Ruder Boskovic Institute
Country Croatia 
Sector Public 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Scientific Committee on Oceanic Research (SCOR)
Country United States 
Sector Charity/Non Profit 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Sun Yat-Sen University
Country China 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation University of British Columbia
Country Canada 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation University of California, San Diego (UCSD)
Department Scripps Institution of Oceanography
Country United States 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation University of East Anglia
Country United Kingdom 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation University of Gothenburg
Country Sweden 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation University of Liverpool
Country United Kingdom 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation University of Miami
Country United States 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation University of Otago
Country New Zealand 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Woods Hole Oceanographic Institution
Country United States 
Sector Charity/Non Profit 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description MARCHEMSPEC: SCOR WG 
Organisation Xi'an Jiaotong Liverpool University 
Country China 
Sector Academic/University 
PI Contribution This SCOR working group aims to review how chemical speciation is currently modelled, to define standards and new needs and to provide online tools
Collaborator Contribution partners are divided between full members, that are responsible for the delivery of the aims of the WG, and associate members (like me) that are contributing more loosely.
Impact collaboration is multidisciplinary, involving chemists, modellers and oceanographers
Start Year 2014
 
Description Marine Model Development 
Organisation Norwegian Institute for Water Research (NIVA)
Country Norway 
Sector Public 
PI Contribution Sharing of PML European regional seas ecosystem model (ERSEM) model code. Co development of model couplers for ERSEM to the ROMS ocean model and the FVCOM coastal ocean models using the Framework
Collaborator Contribution Sharing of the Bottom RedOx Model (BROM, v.1.0):a coupled benthic-pelagic model for simulation of seasonal anoxia and its impact. Development of a model coupler for BROM with GOTM (General Ocean Turbulence Model). ERSEM ROMS coupling.
Impact Lake Urmia is a salt lake in northwestern Iran not far from the Turkish border. It is believed to be one of the largest salt lakes on the planet. The lake has been drying out and the surrounding desert has been expanding in recent years, having a serious impact on the climate and environment of the region. In the last twenty years it has shrunk by 60% due to climate change and damming of the rivers flowing into the lake. PML is working within a NIVA led project to develop and apply modelling tools for the lake in order to help assess the environmental impact of a proposed plan to possible environmental effects of transferring water from the Caspian Sea to salt Lake Urmia to prevent it from drying out.
Start Year 2012
 
Description Modelling coastal and shelf Ecosystem 
Organisation East China Normal University (ECNU)
Country China 
Sector Academic/University 
PI Contribution I presented work on modelling Ocean Acidification and green house gases in the Shelf sea, and new methodologies for analysing model outputs
Collaborator Contribution Each partner contributed sharing his experience on modelling methodologies, interactions with end-users, and participation to international efforts
Impact as a consequence of the tighter collaboration with NIVA, we have been invited to participate to a H2020 proposal
Start Year 2016
 
Description Modelling coastal and shelf Ecosystem 
Organisation Middle East Technical University
Department Department Of Civil Engineering
Country Turkey 
Sector Academic/University 
PI Contribution I presented work on modelling Ocean Acidification and green house gases in the Shelf sea, and new methodologies for analysing model outputs
Collaborator Contribution Each partner contributed sharing his experience on modelling methodologies, interactions with end-users, and participation to international efforts
Impact as a consequence of the tighter collaboration with NIVA, we have been invited to participate to a H2020 proposal
Start Year 2016
 
Description Modelling coastal and shelf Ecosystem 
Organisation Norwegian Institute for Water Research (NIVA)
Country Norway 
Sector Public 
PI Contribution I presented work on modelling Ocean Acidification and green house gases in the Shelf sea, and new methodologies for analysing model outputs
Collaborator Contribution Each partner contributed sharing his experience on modelling methodologies, interactions with end-users, and participation to international efforts
Impact as a consequence of the tighter collaboration with NIVA, we have been invited to participate to a H2020 proposal
Start Year 2016
 
Description Modelling coastal and shelf Ecosystem 
Organisation Technical University of Denmark
Country Denmark 
Sector Academic/University 
PI Contribution I presented work on modelling Ocean Acidification and green house gases in the Shelf sea, and new methodologies for analysing model outputs
Collaborator Contribution Each partner contributed sharing his experience on modelling methodologies, interactions with end-users, and participation to international efforts
Impact as a consequence of the tighter collaboration with NIVA, we have been invited to participate to a H2020 proposal
Start Year 2016
 
Description NPOP DA WG 
Organisation National Partnership for Ocean Prediction (NPOP)
Country United Kingdom 
Sector Private 
PI Contribution Scientific discussion; Oral presentation at the 3rd NPOP/NCOF Data Assimilation Workshop (University of Reading, 26/10/2015)
Collaborator Contribution Scientific discussion; Workshop organization
Impact Oral presentation at the 3rd NPOP/NCOF Data Assimilation Workshop (University of Reading, 26/10/2015)
Start Year 2014
 
Description NPOP Working Group for Next Generation Biogeochemical Models 
Organisation Centre For Environment, Fisheries And Aquaculture Science
Country United Kingdom 
Sector Public 
PI Contribution Co-Chair
Collaborator Contribution Coordinated model development of marine biogeochemical models
Impact Workshop at kick-off meeting
Start Year 2016
 
Description NPOP Working Group for Next Generation Biogeochemical Models 
Organisation Meteorological Office UK
Country United Kingdom 
Sector Public 
PI Contribution Co-Chair
Collaborator Contribution Coordinated model development of marine biogeochemical models
Impact Workshop at kick-off meeting
Start Year 2016
 
Description NPOP Working Group for Next Generation Biogeochemical Models 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Co-Chair
Collaborator Contribution Coordinated model development of marine biogeochemical models
Impact Workshop at kick-off meeting
Start Year 2016
 
Description National Partnership for Ocean Prediction (NPOP). 
Organisation Centre For Environment, Fisheries And Aquaculture Science
Country United Kingdom 
Sector Public 
PI Contribution Launched in April 2107, The mission of the partnership is to develop and promote marine products and services, with a focus on national and public benefit. It member are PML, NOC, Cefas and UKMO. NPOP focuses on the integration of models, observations and scientific understanding, and how these can be used to produce good quality information and advice about the marine environment. The partnership itself does not provide services, but facilitates the partners to develop these services, and helps them to be used as widely as possible and to the best effect. PML works with the partnership to provide ecosystem models for the NW European shelf operational forecast system and with UKMO to further develop operational data assimilation. This is managed through a join position between to 2 organisations.
Collaborator Contribution Setting priorities for research and observation collection is key to the success of ocean prediction services. The National Partnership of Ocean Prediction has an important role in understanding and defining these priorities. Our activity groups provide the fora in which the work of the research community can be coordinated, to ensure we work in a complimentary way to maximise the impact of our research and services. They are also the route through which we can understand where the gaps in understanding, tools or observations lie. This informs our own priorities, as well as providing appropriate guidance for the observations community and others. The partnership provides a means of engaging with users so that they have a good understanding of the services we provide, and we have a good understanding of how we need to develop our services to meet their needs. As a partnership we look for funding to underpin the work needed to develop the services, and have a stronger, more coherent, voice than we do as individual groups.
Impact Annual science, meeting. development of a strategy for ocean forecasting.
Start Year 2016
 
Description National Partnership for Ocean Prediction (NPOP). 
Organisation Meteorological Office UK
Country United Kingdom 
Sector Public 
PI Contribution Launched in April 2107, The mission of the partnership is to develop and promote marine products and services, with a focus on national and public benefit. It member are PML, NOC, Cefas and UKMO. NPOP focuses on the integration of models, observations and scientific understanding, and how these can be used to produce good quality information and advice about the marine environment. The partnership itself does not provide services, but facilitates the partners to develop these services, and helps them to be used as widely as possible and to the best effect. PML works with the partnership to provide ecosystem models for the NW European shelf operational forecast system and with UKMO to further develop operational data assimilation. This is managed through a join position between to 2 organisations.
Collaborator Contribution Setting priorities for research and observation collection is key to the success of ocean prediction services. The National Partnership of Ocean Prediction has an important role in understanding and defining these priorities. Our activity groups provide the fora in which the work of the research community can be coordinated, to ensure we work in a complimentary way to maximise the impact of our research and services. They are also the route through which we can understand where the gaps in understanding, tools or observations lie. This informs our own priorities, as well as providing appropriate guidance for the observations community and others. The partnership provides a means of engaging with users so that they have a good understanding of the services we provide, and we have a good understanding of how we need to develop our services to meet their needs. As a partnership we look for funding to underpin the work needed to develop the services, and have a stronger, more coherent, voice than we do as individual groups.
Impact Annual science, meeting. development of a strategy for ocean forecasting.
Start Year 2016
 
Description National Partnership for Ocean Prediction (NPOP). 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Launched in April 2107, The mission of the partnership is to develop and promote marine products and services, with a focus on national and public benefit. It member are PML, NOC, Cefas and UKMO. NPOP focuses on the integration of models, observations and scientific understanding, and how these can be used to produce good quality information and advice about the marine environment. The partnership itself does not provide services, but facilitates the partners to develop these services, and helps them to be used as widely as possible and to the best effect. PML works with the partnership to provide ecosystem models for the NW European shelf operational forecast system and with UKMO to further develop operational data assimilation. This is managed through a join position between to 2 organisations.
Collaborator Contribution Setting priorities for research and observation collection is key to the success of ocean prediction services. The National Partnership of Ocean Prediction has an important role in understanding and defining these priorities. Our activity groups provide the fora in which the work of the research community can be coordinated, to ensure we work in a complimentary way to maximise the impact of our research and services. They are also the route through which we can understand where the gaps in understanding, tools or observations lie. This informs our own priorities, as well as providing appropriate guidance for the observations community and others. The partnership provides a means of engaging with users so that they have a good understanding of the services we provide, and we have a good understanding of how we need to develop our services to meet their needs. As a partnership we look for funding to underpin the work needed to develop the services, and have a stronger, more coherent, voice than we do as individual groups.
Impact Annual science, meeting. development of a strategy for ocean forecasting.
Start Year 2016
 
Description National Partnership for Ocean Prediction - NPOP 
Organisation Centre For Environment, Fisheries And Aquaculture Science
Country United Kingdom 
Sector Public 
PI Contribution I lead the ecosystem models Action Group
Collaborator Contribution the partnership has the aim to promote the use of operational oceanography for marine and maritime policy, management and industries
Impact the partnership organised workshops, conferences and meeting with stakeholders. It is multidisciplnary, involving physical and biological oceanographer, ecosystem modeller, remote sensing scientists and data assimilation scientists
Start Year 2016
 
Description National Partnership for Ocean Prediction - NPOP 
Organisation Meteorological Office UK
Country United Kingdom 
Sector Public 
PI Contribution I lead the ecosystem models Action Group
Collaborator Contribution the partnership has the aim to promote the use of operational oceanography for marine and maritime policy, management and industries
Impact the partnership organised workshops, conferences and meeting with stakeholders. It is multidisciplnary, involving physical and biological oceanographer, ecosystem modeller, remote sensing scientists and data assimilation scientists
Start Year 2016
 
Description National Partnership for Ocean Prediction - NPOP 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution I lead the ecosystem models Action Group
Collaborator Contribution the partnership has the aim to promote the use of operational oceanography for marine and maritime policy, management and industries
Impact the partnership organised workshops, conferences and meeting with stakeholders. It is multidisciplnary, involving physical and biological oceanographer, ecosystem modeller, remote sensing scientists and data assimilation scientists
Start Year 2016
 
Description North-West European Shelf Monitoring and Prediction Service 
Organisation Federal Maritime and Hydrographic Agency of Germany
Country Germany 
Sector Public 
PI Contribution Delivery of biogeochemical component for the North West European Shelf operational system
Collaborator Contribution North West European Shelf operational system for Near Real Time and Reanalysis
Impact Copernicus Marine Environmental Monitoring Service Near Real Time and Reanalysis Products for the NW European Shelf Seas
Start Year 2016
 
Description North-West European Shelf Monitoring and Prediction Service 
Organisation Meteorological Office UK
Country United Kingdom 
Sector Public 
PI Contribution Delivery of biogeochemical component for the North West European Shelf operational system
Collaborator Contribution North West European Shelf operational system for Near Real Time and Reanalysis
Impact Copernicus Marine Environmental Monitoring Service Near Real Time and Reanalysis Products for the NW European Shelf Seas
Start Year 2016
 
Description North-West European Shelf Monitoring and Prediction Service 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Delivery of biogeochemical component for the North West European Shelf operational system
Collaborator Contribution North West European Shelf operational system for Near Real Time and Reanalysis
Impact Copernicus Marine Environmental Monitoring Service Near Real Time and Reanalysis Products for the NW European Shelf Seas
Start Year 2016
 
Description North-West European Shelf Monitoring and Prediction Service 
Organisation Norwegian Institute of Marine Research
Country Norway 
Sector Academic/University 
PI Contribution Delivery of biogeochemical component for the North West European Shelf operational system
Collaborator Contribution North West European Shelf operational system for Near Real Time and Reanalysis
Impact Copernicus Marine Environmental Monitoring Service Near Real Time and Reanalysis Products for the NW European Shelf Seas
Start Year 2016
 
Description OA impact on Coraline algae 
Organisation University of Bristol
Country United Kingdom 
Sector Academic/University 
PI Contribution I provided projection of future pH in UK coastal marine environment
Collaborator Contribution She used those projection to do a preliminary assessment of the impact of OA on coralline algae in UK sites
Impact Proposal to NERC submitted
Start Year 2015
 
Description PML-Met Office Joint Post Biogeochemical Modelling Leadership 
Organisation Meteorological Office UK
Country United Kingdom 
Sector Public 
PI Contribution PML provides the leadership for the biogeochemical components of the Met Office predictive ocean model suite
Collaborator Contribution Met Office lead the production of operational and climate predictive products for a number of stakeholders including UK government and EU CMEMS/Mercator.
Impact The partnership has underpinned: NOWMAPS 1 and NOWMAPS 2 - Delivery of operational marine products to CMEMS; the UK National Ocean Prediction programme (NPOP) and the UK Environmental prediction programme UKEP. UKEP involves terrestrial, atmospheric and marine modelling communities.
Start Year 2016
 
Description Royal Met Soc - DA SIG 
Organisation Meteorological Office UK
Country United Kingdom 
Sector Public 
PI Contribution I am member of the Organizing Committee of the Special Interest Group of the Royal Meteorological Society
Collaborator Contribution I brought unique expertise on ocean biogeochemical data assimilation within the workshops organized by this SIG
Impact Workshops and discussions on the advancement of data assimilation.
Start Year 2015
 
Description Royal Met Soc - DA SIG 
Organisation University of Reading
Country United Kingdom 
Sector Academic/University 
PI Contribution I am member of the Organizing Committee of the Special Interest Group of the Royal Meteorological Society
Collaborator Contribution I brought unique expertise on ocean biogeochemical data assimilation within the workshops organized by this SIG
Impact Workshops and discussions on the advancement of data assimilation.
Start Year 2015
 
Description SAMS 
Organisation Scottish Association For Marine Science
Country United Kingdom 
Sector Charity/Non Profit 
PI Contribution Collaboration between us and SAMS for configuration of our common modelling tools. In particular, this has been for the configuration of the atmospheric model we use.
Collaborator Contribution Help setting up and troubleshooting model configurations and data sources.
Impact We have generated a decade of atmospheric model outputs which we use for a range of modelling applications. These results have also been included in a peer-reviewed publication.
Start Year 2012
 
Description STEMM-CCS collaboration 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution NOC Southampton have received results from our modelling to help interpret their fieldwork observations.
Collaborator Contribution They have sent locations and times of interest for us to extract relevant data from the model results.
Impact The results I've supplied are being used by a PhD student in their thesis work.
Start Year 2017
 
Description UK Environmental Prediction System 
Organisation Meteorological Office UK
Country United Kingdom 
Sector Public 
PI Contribution Develpoment of Biogeochemical Component of the System
Collaborator Contribution Development of coupled regional land-ocean-atmosphere modellling system
Impact coupled regional land-ocean-atmosphere modellling system prototype
Start Year 2015
 
Description UK Environmental Prediction System 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Develpoment of Biogeochemical Component of the System
Collaborator Contribution Development of coupled regional land-ocean-atmosphere modellling system
Impact coupled regional land-ocean-atmosphere modellling system prototype
Start Year 2015
 
Description UK Environmental Prediction System 
Organisation Natural Environment Research Council
Department Centre for Ecology & Hydrology (CEH)
Country United Kingdom 
Sector Academic/University 
PI Contribution Develpoment of Biogeochemical Component of the System
Collaborator Contribution Development of coupled regional land-ocean-atmosphere modellling system
Impact coupled regional land-ocean-atmosphere modellling system prototype
Start Year 2015
 
Description UK shelf seas modelling consortium 
Organisation Centre For Environment, Fisheries And Aquaculture Science
Country United Kingdom 
Sector Public 
PI Contribution Develpoment of the first UK ecosystem community model for shelf seas
Collaborator Contribution Model development, code management and distribution, documentation and licensing.
Impact UK community modelling suite.
Start Year 2013
 
Description UK shelf seas modelling consortium 
Organisation Meteorological Office UK
Country United Kingdom 
Sector Public 
PI Contribution Develpoment of the first UK ecosystem community model for shelf seas
Collaborator Contribution Model development, code management and distribution, documentation and licensing.
Impact UK community modelling suite.
Start Year 2013
 
Description UK shelf seas modelling consortium 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution Develpoment of the first UK ecosystem community model for shelf seas
Collaborator Contribution Model development, code management and distribution, documentation and licensing.
Impact UK community modelling suite.
Start Year 2013
 
Description Using experimental data for evaluation and improvement of the resuspension component in the ERSEM model 
Organisation University of Portsmouth
Country United Kingdom 
Sector Academic/University 
PI Contribution A joint PML-UoP proposal for supplementary project within NERC/Defra Shelf Sea Biogeochemistry programme was funded.
Collaborator Contribution A joint PML-UoP proposal for supplementary project within NERC/Defra Shelf Sea Biogeochemistry programme was funded.
Impact The main aim of this project is to evaluate and improve the resuspension component of ERSEM model. Evaluation of the model will be done using the observational data obtained from the SSB flume work (and complimented with historical data from other projects). The model will be subsequently parameterized using observed critical shear stresses for the different sediment types.
Start Year 2016
 
Description Workshop with experimentalist scientists to develop improved iron formulation 
Organisation National Oceanography Centre
Country United Kingdom 
Sector Academic/University 
PI Contribution The PML modelling group organised a workshop in London (November 2016) to discuss model development with internationally recognised experts in marine Fe-cycle
Collaborator Contribution Experts from NOC (and other institutes) attended the workshop and provided advises on how to improve the current formulation describing iron in ERSEM
Impact Not output/outcomes yet
Start Year 2016
 
Description next generation benthic models 
Organisation Ca' Foscari University of Venice
Country Italy 
Sector Academic/University 
PI Contribution I wrote a proposal for an international workshop to be funded by the EUROmarine network to define the guidelines for the development of next generation benthic model
Collaborator Contribution they contribute to the proposal
Impact proposal submitted to EUROMARINE network and it has been funded
Start Year 2014
 
Description next generation benthic models 
Organisation Italian National Institute of Oceanography and Experimental Geophysics (OGS)
Country Italy 
Sector Public 
PI Contribution I wrote a proposal for an international workshop to be funded by the EUROmarine network to define the guidelines for the development of next generation benthic model
Collaborator Contribution they contribute to the proposal
Impact proposal submitted to EUROMARINE network and it has been funded
Start Year 2014
 
Description next generation benthic models 
Organisation Royal Netherlands Institute for Sea Research
Country Netherlands 
Sector Academic/University 
PI Contribution I wrote a proposal for an international workshop to be funded by the EUROmarine network to define the guidelines for the development of next generation benthic model
Collaborator Contribution they contribute to the proposal
Impact proposal submitted to EUROMARINE network and it has been funded
Start Year 2014
 
Description next generation benthic models 
Organisation Utrecht University
Country Netherlands 
Sector Academic/University 
PI Contribution I wrote a proposal for an international workshop to be funded by the EUROmarine network to define the guidelines for the development of next generation benthic model
Collaborator Contribution they contribute to the proposal
Impact proposal submitted to EUROMARINE network and it has been funded
Start Year 2014
 
Title BGC-val: Biogeochemical model evaluation suite 
Description The BGC-val model evaluation suite. This is a python toolkit to evaluation marine models from netcdf to html. This release is associated with the paper submitted to Geoscientific Model Development: BGC-val: a model and grid independent python toolkit to evaluate marine biogeochemical models, Lee de Mora, Andrew Yool, Julien Palmieri, Alistair Sellar, Till Kuhbrodt, Ekaterina Popova, Colin Jones, and J. Icarus Allen, Geoscientific Model Development, 2018. gmd-2018-103 This file is the version 1.0.1 of BGC-val which is associated with the final version of the GMD paper. The previous beta version (https://doi.org/10.5281/zenodo.1215935) has been superseded by this version. A fully functional and documented snapshot of the BGC-val toolkit with an associated DOI address will be permanently available via the Zenodo service, https://doi.org/10.5281/zenodo.1320830. An up to date version will be available at via our in-house gitlab server: https://gitlab.ecosystem-modelling.pml.ac.uk/BGC-val-users/bgc-val Registration for the gitlab server is required: http://www.pml.ac.uk/Modelling_at_PML/Access_Code 
Type Of Technology Software 
Year Produced 2018 
Open Source License? Yes  
Impact This toolkit has been used for monitoring the spin up of the UKESM, speeding up the turnover of model production and validation iterations, while strengthening the role of collaboration between the multiple sites who contribute to the UKESM. Outside of the UKESM, this toolkit has also been applied to the NEMO-ERSEM model in the North Atlantic domain, to POLCOMS-ERSEM in the GCOMS North East Asia domain, and to many CMIP5 models products. 
URL https://www.geosci-model-dev.net/11/4215/2018/
 
Title Collaborated on maintaining and developing the publicly accessible European Regional Seas Ecosystem Model (ERSEM) 
Description The ERSEM software package includes a re-locatable biogeochemical water column model based on GOTM-ERSEM. The code and model setups presented have been developed as a community modelling tool for the NERC Defra UK Shelf Sea Biogeochemistry program. 
Type Of Technology Physical Model/Kit 
Year Produced 2014 
Impact ERSEM now has in excess of 180 registered users from countries within Europe, The Americas, and Autralasia. This number has grown steadily since the release of the code in 2014. Use of the model is integral to numerous ongoing research projects, including the Shelf Seas Biogeochemistriy Programme and the Marine Ecosystems Research Programme. 
URL http://www.shelfseasmodelling.org/Download-code-en
 
Title ESMValTool v2 (beta) 
Description ESMValTool v2: A community diagnostic and performance metrics tool for routine evaluation of Earth system models in CMIP. 
Type Of Technology Webtool/Application 
Year Produced 2019 
Open Source License? Yes  
Impact This toolkit is being used to evaluate CMIP5 and CMIP6 models. We also expect to use this toolkit to evaluate UKESM1 in the near future. Please note that L. de Mora is only one of a dozen or so contributions to this toolkit. 
URL http://esmvaltool.readthedocs.io/en/version2_development
 
Title Ensemble Kalman Filter data assimilation code for GOTM-ERSEM 1D coupled hydrodynamic-ecosystem model 
Description We have implemented the Ensemble Kalman Filter to use with two public oceanic models, European Regional Seas Ecosystem Model (ERSEM) and General Ocean Turbulence Model (GOTM) 
Type Of Technology Software 
Year Produced 2014 
Open Source License? Yes  
Impact The code allows the assessment of the impact of assimilating different 'observable' variables such as underwater light absorption, macronutrients or chlorophyl-a in the evolution of pelagic and benthic ecosystems. It supports implementations of 3D data assimilation algorithms. 
 
Title FAMB ERSEM 
Description The Framework for Aquatic Biogeochemical Models (FABM): a Fortran 2003 programming framework for biogeochemical models of marine and freshwater systems. FABM enables complex biogeochemical models to be developed as sets of stand-alone, process-specific modules. These can be combined at runtime to create custom-tailored models. This approach has been adopted to implement several large ecosystem models in FABM, including ERSEM (marine), and AED and PCLake (freshwater). FABM has also been used to model suspended sediment and redox chemistry. FABM has been coupled to several hydrodynamic models, including GOTM, GETM, GLM, MOM4 and MOM5. It also comes with a stand-alone box model driver. FABM uses modern software standards: it is coded in object-oriented Fortran 2003, has a build system based on CMake, and uses YAML files for configuration. FABM makes it easy to partition complex biogeochemistry over many building blocks, called "model instances" in FABM. The fabm-ersem port currently makes everything that can be considered as "integral physical particle" a model instance. 
Type Of Technology Software 
Year Produced 2015 
Open Source License? Yes  
Impact none as yet 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/
 
Title FVCOM Python Toolbox 
Description Python tools for interrogating FVCOM model data. 
Type Of Technology Software 
Year Produced 2019 
Open Source License? Yes  
Impact Significantly speeds up post-processing model outputs. Also increasing use in parallel processing of outputs and inputs for FVCOM. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/fvcom/pyfvcom
 
Title FVCOM toolbox 
Description Provide pre- and post-processing tools for the FVCOM hydrodynamic model. 
Type Of Technology Software 
Year Produced 2019 
Open Source License? Yes  
Impact The toolbox has been included in the official release of FVCOM. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/fvcom/fvcom-toolbox
 
Title Fortran code for fate modelling of antiparasitic substances 
Description This is code to be used within the FABM framework and so it is available for multiple hydrodynamic models (FVCOM, ROMS, NEMO and others). The code enables the user to simulate the dispersion of organic matter originating from salmon fish cages practices and its interaction with antiparasitic substances used to treat salmon lice infections. The code is generic and can be used for substances such as Emamectin benzoate, Diflubenzuron or Teflubenzuron. 
Type Of Technology Software 
Year Produced 2018 
Open Source License? Yes  
Impact The code enables predictions of how use of antiparasitics can transfer to sea bed sediments and estimates the concentrations that can exist in the environment given the simulated hydrodynamics. 
URL http://tapas-h2020.eu/results/
 
Title Generic prokaryote 
Description A new formulation describing the metabolism of a generic, non photosynthetic prokaryote (bacteria and archaea) has been implemented in the European Regional Seas Ecosystem Model (ERSEM). The new formulation implies that different metabolic pathways (aerobic heterotrophy, anaerobic heterotrophy and chemolithotrophy) act simultaneously. However, the relative magnitude of each pathway dynamically varies depending on the environmental conditions (i.e. O2 concentration, DOM and NH4). Thanks to this feature, the model is able to simulate in a dynamic way important processes such as denitrification, nitrification and N2O production. 
Type Of Technology Software 
Year Produced 2015 
Impact The new formulation substantially improves the representation of the nitrogen cycle in ERSEM 
 
Title Mixothrophy 
Description A new formulation describing mixotrophy has been implemented in the European Regional Seas Ecosystem Model (ERSEM). The new model implies that mixotrophic plankton is able to select the most convenient feeding strategy (phototrophy or phagotrophy) depending on the availability of light, nutrients and potential prey (bacteria and small phytoplankton). 
Type Of Technology Software 
Year Produced 2016 
Impact The new formulation will allow to test the importance of mixothrophy in the planktonic ecosystem and assess its impact on trophic fluxes and carbon export. 
 
Title Model data portal 
Description Data portal for visualisation, browsing and retrieval of model simulation data 
Type Of Technology Webtool/Application 
Year Produced 2016 
Impact Open dissemination of model products to the general public 
URL https://portal.ecosystem-modelling.pml.ac.uk/
 
Title PyProTex documentation software 
Description Software documentation software to automatically generate manuals from LaTex code tags. 
Type Of Technology Software 
Year Produced 2014 
Open Source License? Yes  
Impact Facilitation of model documentation process. 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/momm/pyprotex
 
Title Salinity stress 
Description A simple model describing the relationship between growth and salinity in a generic species of the genus Dunaliella (green algae) has been developed. The new formulation implies an "optimal" level of salinity under which Dunaliella species manage to optimise their growth. When environmental salinity diverges from the optimal level both hyposaline and hypersaline stress are described by the model (by decreasing the photosynthetic rate). The new model has been implemented in the primary production module of the European Regional Seas Ecosystem Model. In particular the new formulation has been applied to the phytoplankton functional type "P2" which in ERSEM describes the dynamics of phytoplankton ranging from 2 to 20 um in diameter (nanoplankton). The model was preliminarily run in a zero-dimensional configuration in order to reproduce a batch culture experiment reported in literature 
Type Of Technology Software 
Year Produced 2015 
Impact With this new formulation ERSEM can better describe plankton dynamics in environments in which salinity plays an important role in shaping phytoplankton community (e.g. estuaries) 
 
Title Silica dissolution in the water column 
Description A new formulation describing the dissolution of particulate organic silica in the water column has been developed and implemented in the European Regional Seas Ecosystem Model (ERSEM). Silica dissolution is assumed to be dependent on temperature and on the ratio between silica and carbon in the particles. Si:C ratio represents the magnitude of the organic coat which reduces the dissolution of silica (i.e. low Si:C ratios decrease the dissolution rate). In this way, the model accounts for the role played by pelagic bacteria in this process. Bacteria, in fact, are able to increase the Si:C ratio in particulate organic matter by only using C and leaving Si. 
Type Of Technology Software 
Year Produced 2015 
Impact This new development improves the representation of Si dynamics in ERSEM 
 
Title Software Repository 
Description Git-based fully version controlled software code repository with web-interface including wiki and issue tracking system 
Type Of Technology Webtool/Application 
Year Produced 2016 
Impact Dissemination of in-house and collaboratively developed software to registered users or general public, enabling collaborative development across centres. 
URL http://gitlab.ecosystem-modelling.pml.ac.uk
 
Title Trait Explorer 
Description For many applications we need to know the traits of marine species. This is crucial for understanding ecosystem function and building ecosystem models. Unfortunately, while literature and online databases are replete with trait values, we are still a long way away from a complete characterization of every species. The Trait Explorer web service addresses this issue by estimating traits for any species, through a form of "automated expert judgement" that combines large datasets with published trait values and the latest taxonomic information. Its results account for taxonomic relationships between species (related species tend to have similar traits) and power law-like relationships between traits (e.g., organism mass is a good predictor for other size metrics and many physiological traits). 
Type Of Technology Webtool/Application 
Year Produced 2017 
Impact The Trait Explorer web service is used in the NERC/Defra Shelf Seas Biogeochemistry (SSB) programme and the Marine Ecosystem Research Programme (MERP) to estimate the size and carbon mass of a wide variety of marine species, which in turn is used for validation of model results, notably of the European Regional Seas Ecosystem Model (ERSEM). 
URL http://www.marine-ecosystems.org.uk/Trait_Explorer
 
Title Trait Explorer extensions 
Description The Trait Explorer web service has been expanded with additional datasets and functionality, including the ability to estimate parameters of Dynamic Energy Budget models 
Type Of Technology Webtool/Application 
Year Produced 2017 
Impact In the first 10 months of availability (Jan-Oct 2017), the web service received more than 800 queries from 101 unique users from 20 different countries. 
URL http://www.marine-ecosystems.org.uk/Trait_Explorer
 
Title matplotlibXtns 
Description Extensions to the matplotlib package of python 
Type Of Technology Software 
Year Produced 2017 
Open Source License? Yes  
Impact providing tools to user comunity 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/momm/matplotlibXtns
 
Title numpyXtns 
Description Extension package for python numpy/scipy packages. 
Type Of Technology Software 
Year Produced 2017 
Open Source License? Yes  
Impact providing tools to user comunity 
URL https://gitlab.ecosystem-modelling.pml.ac.uk/momm/numpyXtns
 
Description 2nd workshop of the EU Network of Experts for ReDEveloping Models of the European Marine Environment (MEME) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Policymakers/politicians
Results and Impact The second workshop of the 'Network of Experts for ReDeveloping Models of the European Marine Environment' was held on 22-23 March 2017 in Brussels, Belgium, jointly organized by DG Environment and DG JRC (Water and Marine Resources Unit) within the framework of the Administrative Arrangement (N110661/ENV.C.2/2016/733192) and the Marine Strategy Framework Directive (MFSD). The aim of this workshop was to continue the information exchange between the Commission and marine modelling experts. Another important objective of this initiative is to narrow the gap between modellers and decision makers in order to better exploit the full utility of models. In this context, the workshop consisted of 17 presentations covering the wide use of marine ecosystem models to address several indicators of the MFSD in coastal zones and European regional seas, including assessment, indicator development and scenario building. The presentations dealt with (1) General lectures, (2) Eutrophication, (3) Hydrography, (4) Higher Trophic Levels and (5) Fish. The participants were invited to join the network informal 'Network of experts on the Modelling of the European Marine Environment (MEME)'. DG Environment and DG JRC emphasized the added value of a joint effort to further develop modelling capabilities with the objective of providing useful advice for policy makers.
Year(s) Of Engagement Activity 2017
 
Description 3rd Carbon from Space Workshop Exeter Jan 2016 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact To explore mechanisms for implementation of the CEOS and GEO recommendations, in collaboration with the Global Carbon Project, the European Space Agency (ESA) is convening the 3rd Carbon form Space workshop bringing together the EO, climate and Earth system science communities addressing the carbon cycle to define a concrete work plan of research and development activities to guide ESA and other space agencies and institutions to respond to the requirements for observations and their exploitation in the time frame 2017-2021.
Year(s) Of Engagement Activity 2015
URL http://www.copernicus.eu/events/3rd-carbon-space-workshop
 
Description 8th UK FVCOM Workshop 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I gave a talk at the 8th UK FVCOM Workshop entitled "PML's approach to FVCOM modelling, set up and validation". Publicising PML's work with FVCOM has meant that, for example, our recent job advert has received interest from people present at the workshop. In addition, I was asked to present PML's modelling work to Marine Scotland Science with a view to exploring potential future colloborations.
Year(s) Of Engagement Activity 2017
 
Description AMEMR - DivERSEM talk 
Form Of Engagement Activity Scientific meeting (conference/symposium etc.)
Part Of Official Scheme? No
Type Of Presentation paper presentation
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact I presented DivERSEM and its application to study the susceptibility of European Regional Seas to invasion from Non-Indigenous Species of phytoplankton that stimulated lively debate at the end

after the talk, I have been approached by Dr. Rossberg (CEFAS) and we initiated discussion for future collaboration on modelling and studying phytoplankton diversity
Year(s) Of Engagement Activity 2014
URL http://www.amemr.info
 
Description AMEMR - OA poster 
Form Of Engagement Activity Scientific meeting (conference/symposium etc.)
Part Of Official Scheme? No
Type Of Presentation poster presentation
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact A poster on the combined impact of interaction of Ocean Acidification, Climate change and eutrophication has been presented

several scientists showed interest, in particular I discussed with a Korean student and gave him guidance for his research
Year(s) Of Engagement Activity 2014
URL http://www.amemr.info
 
Description AMEMR conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presented work on the riverine impacts on offshore aquaculture (poster and presentation) at this year's AMEMR conference.
Year(s) Of Engagement Activity 2017
URL https://www.amemr.com/
 
Description ASLO Aquatic Sciences meeting, Hawaii 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presentation at the ASLO Aquatic Sciences meeting, 26 Feb - 3 Mar 2017, Hawaii: "How to capture species succession and evolution in large-scale biogeochemical models?"

Abstract:
In nature, part of the impact of environmental change on ecosystem functioning is cushioned by changes in species composition and by genetic evolution: the community adapts. These responses can reduce the sensitivity of mass and energy fluxes to change - a key parameter in climate change research. The potential influence of these responses is greatest in the ocean, where the cycling of matter and energy is dominated by small, fast reproducing species. However, the models that routinely predict the response of marine systems to climate change do not describe species diversity and evolution in any detail, and are not easily amended to do so. Recent "trait-based" approaches provide a conceptual framework for the modelling of species diversity, but their present implementations remain computationally expensive and unsuitable for the dynamic introduction of new types, implicit in genetic evolution. I discuss how these problems can be addressed by leveraging concepts and methods from the field of "adaptive dynamics". By describing the intra- and interspecific diversity in terms of the distribution of a few key traits, the dynamic structure of the ecosystem can be modelled with a few variables. As shown with a canonical ecosystem model in a spatially resolved world ocean, this approach remains viable in the presence of advective and diffusive transport of biota, and smoothly incorporates genetic evolution as another source of biodiversity, linked to reproductive effort. These provide a starting point for the modelling of species diversity and evolution in computationally efficient manner.
Year(s) Of Engagement Activity 2017
 
Description Addressing uncertainty in projecting climate change impacts in marine ecosystems 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Discussions about model uncertainty, ways of dealing with it and communicating it.
Year(s) Of Engagement Activity 2015
 
Description Addressing uncertainty in projecting climate change impacts in marine ecosystems 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Discussion about model uncertainty and how it can be communicated better way.
Year(s) Of Engagement Activity 2016
URL https://www.pices.int/meetings/international_symposia/2015/2015-Climate-Change/sci_program.aspx
 
Description Antarctic Science conference (UEA, Norwich) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Other audiences
Results and Impact Attendance to the conference to network with national specialist in Antarctic science.
Year(s) Of Engagement Activity 2016
 
Description Aquatic Ecosystem MOdelling Network (AEMON) workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Invited to attend. Workshop with 46 participants served as platform to discuss current challenges and opportunities in aquatic ecosystem modelling. Topics: what new developments are unfolding, what is missing and where can we improve as a community? Finding new ways to link ecological process formulations with hydrological drivers. Outcome includes co-authored paper (Janssen et al 2015)
Year(s) Of Engagement Activity 2015
 
Description Atlantic Fora 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Study participants or study members
Results and Impact Atlantic Fora are a research discussion place where internal cross-disciplinary research audience can share latest news, research ideas and ask for advice. It is open to all across the PML lab with input from other Plymouth research teams that form the Western Channel Observatory.

In 2016 this meets monthy. 2003 - 2015 it has been seasonal with typically 4 per year.

The fora has helped informal discussion of research ideas, also a 'town hall' type meeting on occasions to allow senior members to share latest.
Year(s) Of Engagement Activity 2012,2013,2014,2015,2016
 
Description Atlantic Fora with WCO and Atlantic themes 2016 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact In 2016 we hosted 11 regular fora meetings, balanced between Western Channel Observatory and Atlantic themes. The format is open discussion and sharing of latest work and research with contributed discussion slides, discussion and debate.
Year(s) Of Engagement Activity 2016
 
Description Attended the Offshore Renewable Energy Supergen Hub meeting in London to represent PML's science 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Attended the Offshore Renewable Energy Supergen Hub meeting in London to represent PML's science
Year(s) Of Engagement Activity 2017
 
Description CMEMS Validation Experts Workshop - Hamburg 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Discussion and Coordination of model product validation across CMEMS
Year(s) Of Engagement Activity 2016
 
Description CSLF taskforce 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact Technical Barriers and R&D Opportunities for Offshore, Sub-Seabed Geologic Storage of Carbon
Dioxide. Report Prepared for the Carbon Sequestration Leadership Forum (CSLF) Technical Group
By the Offshore Storage Technologies Task Force, U.S. Department of Energy.
Year(s) Of Engagement Activity 2015
URL http://www.cslforum.org/publications/documents/OffshoreStorageTaskForce_FinalCombinedReport.pdf
 
Description Carbon Sequestration leadership forum 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Industry/Business
Results and Impact The key outcomes of QICS were presented to the Carbon Sequestration Leadership Forum, in London, July 2016. The CSLF is a Ministerial-level international climate change initiative that is focused on the development of improved cost-effective technologies for carbon capture and storage (CCS). It also promotes awareness and champions legal, regulatory, financial, and institutional environments conducive to such technologies.
Year(s) Of Engagement Activity 2016
URL https://www.cslforum.org/cslf/Events/2016London
 
Description Co-charing the session of the Copernicus Marine Enviornment Monitoring Service (CMEMS) at EGU General Assembly 2017 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This session was very important because it was presenting a selection of works carried out within the EU CMEMS activities, focusing on studies on:
• scientific advances on thematics relevant to CMEMS (e.g. on physical and biogeochemical modeling, coupling with coastal systems; coupling with sea-ice, atmosphere & waves models; data assimilation both for physics and biogeochemistry; impact of existing and future in situ and satellite observations for estimates of the ocean state; processing and analysis of remote and in-situ observations of the ocean) that are needed for the short to long term evolution of the CMEMS products.
• verification, validation and uncertainty estimates of CMEMS products, forecasting skills,
• the use of CMEMS products for downstream applications,
• ocean monitoring and on the long-term assessment of the ocean physical and biogeochemical states.
Year(s) Of Engagement Activity 2017
URL http://meetingorganizer.copernicus.org/EGU2017/orals/24345
 
Description Coffee cup science 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Professional Practitioners
Results and Impact Coffee cup science is a regular meeting opportunity for all at PML to share and debate latest. Six are scheduled for 2017
Year(s) Of Engagement Activity 2017
 
Description Conservation of natural resources in coastal ecosystems for the benefit of humankind and global balance 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Workshop to get links with Malaysia researchers in order to trigger future collaborations
Year(s) Of Engagement Activity 2016
URL http://www.qub.ac.uk/research-centres/QueensUniversityMarineLaboratory/research/Malaysia/
 
Description Contributed to the modelling group's presentation to the ISO9001 assessor 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Other audiences
Results and Impact Contributed to the modelling group's presentation to the ISO9001 assessor
Year(s) Of Engagement Activity 2018
 
Description Contribution to MERP newsletter: Trait Explorer 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Contributed news item describing the new Trait Explorer web service, http://www.marine-ecosystems.org.uk/Trait_Explorer
Year(s) Of Engagement Activity 2017
 
Description Cross currents - UKESM described through poetry 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact Through the cross currents project, we prepared and presented a public facing evening of science and poetry. Each scientist was paired with a poet. First the scientist presented a short description of their work, then the poet recited a poem written on the same theme.
Year(s) Of Engagement Activity 2017
URL http://pml.ac.uk/Media_and_events/Events/PML_Events/Poetry_and_Marine_Science
 
Description Data assimilation talk at AMEMR 2014 conference 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Three peers asked questions and discussion continued afterwards.

After reading the paper associated to the science presented at this talk, a post-doc of the USA Environmental Protection Agency (EPA) contacted me for developing an assimilation system in the gulf of Mexico
Year(s) Of Engagement Activity 2014
URL http://www.amemr.info/
 
Description Data downscaling talk at AMEMR 2014 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact Questions after the talk, in the conference session and afterwards.

Peers made aware of a new method relevant to their work.
Year(s) Of Engagement Activity 2014
 
Description Defra briefing to present outputs of Marine Ecosystems Reserach Programme 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Policymakers/politicians
Results and Impact Briefing to staff of UK Department for Environment, Food & Rural Affairs, in order to show case policy-relevant outputs of the Marine Ecosystems Research Programme. Attended by 13 Defra staff, working on topics including marine evidence, fisheries, and marine protected areas. Presented spatially explicit fish projections for UK seas under scenarios for riverine nutrient reduction.
Year(s) Of Engagement Activity 2017
 
Description Developing methods to assess and project scenarios of ocean acidification on to populations, communities and ecosystem services. 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? Yes
Type Of Presentation keynote/invited speaker
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Further discussion

Further discussions for future work
Year(s) Of Engagement Activity 2015
 
Description Dialogue on methods for ecology 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact This dialogue aims to identify some crucial challenges in the area of micro- to macro ecology for the next 20 years as seen by biologists today, which may be tractable to a mathematical modelling approach. The aim is to have a series of short talks (12 minutes plus 3 minutes for questions) which summarise the sorts of data that are available in the different disciplines, how these can be linked to other types of datasets: what are the challenges and what are the gaps? Are we collecting the right sort of data. These will be followed by smaller discussion groups where we can focus on the detail: such as are we producing the right sort of data and how do we incorporate these multiple data sets into current models, do we need a new generation of models?
Year(s) Of Engagement Activity 2016
 
Description Dinoflagellate workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Other audiences
Results and Impact this meeting was organised by Nigel Mortimer , Estuaries officer of the South Devon AONB, to discuss the opportunity to catalyse research on the regularly occurring bloom of Dinoflagellates in Salcombe Estuary. The participants were from very different organisations, from research (e.g. MBA, CEFAS), to government agencies (e.g. EA, Natural England) to NGO (e.g. West Country rivers trust). The discussion was lively and contacts for further work were taken
Year(s) Of Engagement Activity 2017
 
Description Dissolved Organic Matter workshop at PML 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Study participants or study members
Results and Impact A panel of international researchers from terrestrial, freshwater and marine environments gathered at Plymouth Marine Laboratory for 3 days to discuss current knowledge of Dissolved Organic Matter processing in the environment and identify current gaps. The workshop constituted an excellent event in which all participants tried to find a unifying language to describe the DOM characterisation and transformations from a wide range of disciplines. The output of the workshop was a joined manuscript that aims to unify our current understanding from a generic perspective applicable to multiple disciplines and environments. The manuscript is currently in draft version.
Year(s) Of Engagement Activity 2017
 
Description Dynamic spatio-temporal hybrid life cycle analysis 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact Discussions about how different economic models can be combined and used in marine research.
Year(s) Of Engagement Activity 2015
 
Description ERSEM workshop at AMEMR 2017 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Workshop to teach student and senior scientist outside the modelling field how to use the European Regional Seas Ecosystem Model. This covered how to set-up and run the model. Has well as how to use the model to test hypothesis regarding food-web and nutrient circulation or climate change impact.
Year(s) Of Engagement Activity 2017
 
Description ESA CCI-OC at the "Sentinel-3 for Science Workshop" 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Dissemination of novel approaches to value Earth Observation from satellite platform to better simulate and manage marine ecosystems
Year(s) Of Engagement Activity 2015
 
Description EUROMARINE workshop on benthic-pelagic coupling 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A workshop on advancement of conceptual frameworks, modelling and experimental approaches to benthic-pelagic coupling has been held in Plymouth in May 2015. It was attended by 14 participants from 9 different countries.
The lively discussion brought to highlight 6 topics for further investigation and work, a paper is being written and an EGU session has been organised
Year(s) Of Engagement Activity 2015
 
Description European Conference of Ecosystem Modelling 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Keynote talk on 'next generation ecosystem models'

Discussion on how to build models
Year(s) Of Engagement Activity 2014
 
Description FCO meeting 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Foreign & Commonwealth Office meeting on Opportunities for future collaboration in CCS R&D, UK/China/Canada, Southampton 27th Sept 2015
Year(s) Of Engagement Activity 2015
 
Description FVCOM UK user group workshop 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Workshop of the UK users of the FVCOM hydrodynamic model. Shared best practice and research. Collaboration on sea-ice cover code with modellers from Aquaplan-Niva was an outcome of this workshop.
Year(s) Of Engagement Activity 2018
 
Description FVCOM workshop in Edinburgh 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact I gave a talk at the 8th UK FVCOM Workshop entitled "Biogeochemical modelling with FVCOM". The talk exemplified the contributions PML is making to the community model FVCOM and how the additional functionality can help tackle a much wider range of topics than what was previously possible with FVCOM. The talk has instigated the gradual uptake of our biogeochemical model ERSEM by groups in the US. The additions will be part of future regular releases of FVCOM by the UMASSD development team led by Dr. C. Chen at The Marine Ecosystem Dynamics Modelling Laboratory (MEDML) at the School for Marine Science and Technology, University of Massachusetts-Dartmouth.
Year(s) Of Engagement Activity 2017
URL http://fvcom.smast.umassd.edu/
 
Description Fast response to coastal upwelling in the Ría de Vigo presentation at CERF conference 2015 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Oral presentation of work carried out in the Ria de Vigo that exemplifies the value added of sustain long term observations in coastal embayments of significant economic value for identifying the leading processes that setup coastal currents affecting pollution dispersion as well as harmful algal bloom formations.
Year(s) Of Engagement Activity 2015
 
Description GODAE MEOPAR/ GOV Marine Ecosystem Analysis and Prediction Workshop", Dalhousie University, Halifax, Canada, 23-24 June 2015 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Oral presentation on the advantages of data assimilation for marine ecosystem understanding and management.
Year(s) Of Engagement Activity 2015
 
Description Global Ocean Acidification Observing Network (GOA-ON) Science Workshop 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact This has been the third science group involving mostly scientists together with students, members of intergovernmental agencies (e.g. IOC, IAEA) and foundations (e.g. The Ocean foundation, the Sasakawa peace foundation) to discuss and agree on the Governance plan of GOA-ON and to establish the mentorship program
Year(s) Of Engagement Activity 2016
URL http://www.highco2-iv.org/workshop-goa-on
 
Description Global change in coastal marine ecosystems: science, policy and sustainable development 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Discussion about global impacts on coastal systems in Brazil and UK and how to move forward research in this subject.
Year(s) Of Engagement Activity 2015
URL http://www.imar.unifesp.br/v2/index.php/pos-graduacao-e-pesquisa/workshop-british-council
 
Description Guest lecture on Microplastics 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Undergraduate students
Results and Impact Guest lecture to Plymouth University Masters Students on Microplastics
Year(s) Of Engagement Activity 2016
 
Description Guest speaker at the final workshop of the BlueBRIDGE project (EU Horizons 2020), Brussels, Belgium 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Presented recent work on fish catch projections for a varied audience including academics and representatives from the Food and Agriculture Organization, the Marine Stewardship Council, the EU Copernicus program, the EC Directorate-General for Research, the EC Directorate-General for Environment and several SMEs.
Year(s) Of Engagement Activity 2018
URL http://www.bluebridge-vres.eu/events/bluebridge-workshop-supporting-blue-growth-innovative-applicati...
 
Description ICES WGIPEM (working group on integration of physical and ecosystem models) 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Expert working group on marine ecosystem modelling
Year(s) Of Engagement Activity 2019
 
Description ICES WGIPEM (working group on integration of physical and ecosystem models) 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Specialist working group for improvement of marine ecosystem model and their implementation
Year(s) Of Engagement Activity 2018
 
Description ICES WGIPEM workshop. Held in Brest, France 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Workshop regarding progress in modelling of secondary trophic level and impact on lower trophic level
Year(s) Of Engagement Activity 2016
 
Description ICES WGS2D (working group on seasonal to decadal predictions) 
Form Of Engagement Activity A formal working group, expert panel or dialogue
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Working group for the development of the capacity to generate predictions on the seasonal to decadal temporal scale for marine ecosystems
Year(s) Of Engagement Activity 2018
 
Description ICES-WGIPEM presentation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact The presentation, titled "Modelling zooplankton - how and what can we do?" was given at the ICES Working Group on Integrated, Physical-biological and Ecosystem Modelling (WGIPEM). It highlighted the role of zooplankton and the necessity to further develop it's representation in ecosystem models to better characterise ecosystem state and the impact on things like fisheries capacity as it is an important food item for several fishes.
Year(s) Of Engagement Activity 2015
 
Description ICES/PICES 6th Zooplankton Symposium 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Presentation titled "Stoichiometry and Microzooplankton: How one predator answer to food quality impacts the ecosystem around him" Highlighted work conducted and progress regarding zooplankton modelling to a panel of zooplankton specialist (both experimentalist and modellers) fuelling discussion on how to best progress in regard to zooplankton modelling.
Year(s) Of Engagement Activity 2016
URL https://www.ices.dk/news-and-events/symposia/zp6/Pages/default.aspx
 
Description ICES/PICES Workshop on Modelling the Effects of Climate Change on Fish and Fisheries (WK-SICCME) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Other audiences
Results and Impact Pariticipation of the workshop with the scope to coordinate northern hemisphere efforts to understand, estimate and predict the impacts of climate change on marine ecosystems.
Year(s) Of Engagement Activity 2015
 
Description IEAGHG Impacts and Risks 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact IEAGHG CCS Impacts and Risks network meeting, Southampton, 29th 1st Oct. Presentation on marine environmental risks associated with offshore CCS
Year(s) Of Engagement Activity 2015
 
Description IEAGHG Monitoring Network Meeting 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact IEAGHG Monitoring Network Meeting, 10-12 June 2015, Lawrence Berkeley National Laboratory, CA, USA.
Monitoring and baseline options for offshore CCS: outcomes from the QICS project
Year(s) Of Engagement Activity 2015
 
Description IMBER Conference (Norway) 
Form Of Engagement Activity Scientific meeting (conference/symposium etc.)
Part Of Official Scheme? No
Type Of Presentation paper presentation
Geographic Reach International
Primary Audience Other academic audiences (collaborators, peers etc.)
Results and Impact I gave a talk on the effect of OA on the North Western European Shelf ecosystem that stimulated a lively debate afterwards

The talk sparked discussion with Prof. Riebesell team for further collaboration and I mentored one student from ETH during the conference
Year(s) Of Engagement Activity 2014
URL http://www.imber.info/index.php/Meetings/IMBER-OSC-2014
 
Description Impacts of climate change at scales relevant to England's regional marine planning process - poster presented at MCCIP conference 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach