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Additional file 3: Figure S2. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Gene-based nucleotide diversity (D ) for the 21 reference genomes. All genes with high nucleotide...

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Additional file 1: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference,...

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Additional file 2: Figure S1. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Allele frequency spectra for each lineage by synonymous (blue) and non-synonymous (red) mutations....

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Additional file 10: Figure S9. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Non-neutral evolution for genes within Clusters of Orthologous Groups (COG*) categories. Boxplots...

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Additional file 6: Figure S5. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Phylogenetic tree created using only SNPs from pe_pgrs3. No clear clustering by lineage is...

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Additional file 1 of Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains

Additional file 1: Figure S1. Analysis work flow, jpg image.

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Additional file 1 of Large-scale genomic analysis of global Klebsiella pneumoniae plasmids reveals multiple simultaneous clusters of carbapenem-resistant hypervirulent strains

Additional file 1: Figure S1. Analysis work flow, jpg image.

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Additional file 7: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Variant Position Table, Table detailing variants at all positions with at least one non-synonymous...

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Additional file 2: Figure S1. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Allele frequency spectra for each lineage by synonymous (blue) and non-synonymous (red) mutations....

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Additional file 5: Figure S4. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Identifying sites leading to differences in tree topologies based on all SNPs (Additional file 4:...

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Additional file 2: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Non-reference variant frequency histogram, A histogram showing log10(frequency + 1) of...

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Additional file 4: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Scree plots for the principal component analyses, Scree plots showing the proportion of variation...

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Additional file 4: Figure S3. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Phylogenetic tree constructed using 50,540 genome-wide SNPs. Clear clustering according to lineage...

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Additional file 7: Figure S6. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Lineage-specific recombination hotspots. Manhattan plots showing genes that are likely to be...

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Additional file 6: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Cross-resistance phenotype table, Cross-Resistance Table upper diagonal shows proportion of samples...

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Additional file 3: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Population diversity within investigated strains, a Principal component 1 (PC1) by principal...

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Additional file 5: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Drug-resistance phenotype frequency table, Drug-resistance phenotype frequency table by lineage....

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Additional file 3: Figure S2. of Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance

SNP allele frequency spectrum. A large number of rare variants are observed. Peaks with higher...

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Additional file 2: Figure S1. of Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance

The global distribution of geographic origin and lineage of the isolates. Lineages one to four are...

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Additional file 3: Figure S2. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Gene-based nucleotide diversity (D ) for the 21 reference genomes. All genes with high nucleotide...

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Additional file 4: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Scree plots for the principal component analyses, Scree plots showing the proportion of variation...

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Additional file 5: Figure S4. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Identifying sites leading to differences in tree topologies based on all SNPs (Additional file 4:...

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Additional file 2: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Non-reference variant frequency histogram, A histogram showing log10(frequency + 1) of...

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Additional file 8: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Locus Comparison Table, Locus comparison table showing which analyses and in which lineage each...

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Additional file 6: Figure S5. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Phylogenetic tree created using only SNPs from pe_pgrs3. No clear clustering by lineage is...

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Additional file 7: Figure S6. of Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance

Molecular interactions established by wild-type residues in katG and rpoB residues. (A) The...

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Additional file 8: Figure S7. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Evidence of recombination at a gene level in the 21 reference genomes. A Manhattan plot showing...

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Additional file 1: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Variant Summary Tables, Summary tables of variants called in comparison to the H37rv reference,...

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Additional file 9: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Study frequency table, Study frequency table, showing numbers and percentage of strains from each...

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Additional file 10: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Sublineage frequency table, Numbers and percentage by lineage assigned to each sublineage. (PPTX 36...

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Additional file 9: Figure S8. of Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages

Selection dN/dS values for each gene within Clusters of Orthologous Groups (COG*) categories....

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Additional file 10: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Sublineage frequency table, Numbers and percentage by lineage assigned to each sublineage. (PPTX 36...

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Additional file 9: of Genome-wide analysis of Mycobacterium tuberculosis polymorphisms reveals lineage-specific associations with drug resistance

Study frequency table, Study frequency table, showing numbers and percentage of strains from each...

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Fibras de mujer

A very short (4 min) video essay focusing on 'good living' for the indigenous women of...

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Entre la captura patriarcal y nuestra liberacio´n con la Madre Vida

A pamphlet offering a critical approach to the institutionalisation of women's movements from the...

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'Pronunciamiento abierto en apoyo a la comunidad de Pioyá frente a las amenazas del crimen organizado'

An open letter signed by academics and representatives of social and popular processes in a...

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¿Buenos vivires en el contexto actual?

A short (10 min) video comprising interviews with 5 indigenous women from Brazil, Colombia and...

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Aquí caminamos entre todxs [Here we all walk together]

A short (20 min) video made by the autonomous Indigenous community of Pioyá, Cauca, Colombia...

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Venezuela, entre la debacle del sistema y la memoria de la tierra

A video of an interview with Venezuelan Indigenous leader José Ángel Quintero Weir to...

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Conflicto Nasa-Misak: el Estado nos provoca y nosotros caemos en el juego

A short documentary that appeals to dialogue and the wisdom of the Indigenous communities to...

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Pa´yacx U´jweka: caminando con cuidado: aquí resistimos entre todos

A short documentary film narrating some of the collective actions that the Nasa community of...

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¿Fascismo en el siglo XXI? Sí señores!!!

A pamphlet with a text written by Héctor Mondragón to help understand the rise of...

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Están asfixiando la educación en Colombia

A short documentary, made in collaboration with Chiguaco Cine, about the student uprising in...

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Mensagens da terra

A short (15 min) documentary film reflecting on the topic of the Research Network from the...

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Sumak Kawsay and the Sustainable Development Agenda: project website

This is the project website, available in 3 languages. It also contains uploads of the reflective...

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Experimental rebound in close up from Impact of a rigid sphere onto an elastic membrane

Experimental video corresponding to the rebound reported in figure 4d of the manuscript.

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nmRC Photo Competition 2023

Title: Hope SEM image of silver nanoparticle (AgNP ) droplets produced through Inkjet printing,...

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Figures of "Collision of Liquid Drops: Bounce or Merge?"

Matlab figures for Journal of Fluid Mechanics article "Collision of Liquid Drops: Bounce or...

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Dissemination tools: LPBF animation

3-minute animation explaining the multi-metal Laser Powder Bed Fusion processes, including key...

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Dissemination tools: MetalJet animation

3-minute animation explaining the MJ processes, including key features, advantages and products.

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