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EBioAct: Environmentally sustainable production of bioactive triterpenes

Lead Research Organisation: John Innes Centre
Department Name: Biochemistry and Metabolism

Abstract

Many small molecules or natural products produced by animals, plants and other organisms have utility in health and industry. However, access to these molecules can have negative consequences such as over-exploitation of the species in which that molecule is found, or environmental impacts from chemical manufacturing processes. Furthermore, many natural products are structurally complex and cannot be accessed by chemical synthesis, at least at commercial scale.
This proposal will focus on the production of a group of structurally related triterpenoid molecules, some of which have uses in healthcare and others which have potential as pollinator-friendly alternatives to pesticides. These include: i) squalene, widely used to improve the effectiveness of drugs and the immune response to antigens, of which global demand is still partly met by extraction from sharks; ii) steroids used in medicine for treating inflammation and cancer; iii) triterpenoids found in plants that prevent insect-feeding and are of interest to industry as environmentally sustainable crop protection agents.

In this project, we will demonstrate how a plant can be used as a light-powered manufacturing platform for producing squalene and squalene-derived molecules. Our efforts will be focussed on optimising yields; demonstrating that production can be scaled up; demonstrating the utility of compounds that are not yet commercially available; and investigating the technical and economic feasibility of large-scale production.

This work will be carried out in collaboration with partners from industry, and will provide a pathway for commercial, social and environmental impacts. The tools and resources produced in this project will also be applicable for the production of many other molecules. These will be provided to the research community as reusable resources.

Technical Summary

This project will focus on scalable, plant-based production of squalene and steroids for use in human health, and of anti-insect triterpenes for sustainable agriculture.

Triterpenoids are biosynthesised from squalene and are structurally complex, making chemical synthesis difficult and economically unfeasible. The supply chains of several of these molecules have been considered as unsustainable. However, in previous work, we have demonstrated that high yields of these molecules can be obtained by pathway reconstruction in Nicotiana benthamiana. This project will focus on:

(1) Optimised, scalable production of squalene achieved through: (i) upstream pathway engineering; (ii) biochemical characterisation of squalene-producing plants; (iii) large-scale production and purification, including techo-economic feasibility assessment.

(2) Optimised production of steroids and triterpene precursors achieved through: (i) production of plastid-derived triterpenes and sterols; (ii) engineering plants optimised for triterpene production; (iii) optimising regulatory sequences to maximise yields; (iv) development of N. benthamiana for steroid production, exemplified by cholesterol and diosgenin.

(3) Platforms for engineering and evaluation of anti-insect triterpenes achieved though: (i) utilising a N. benthamiana/hornworm system to evaluate limonoids for anti-insect activity; (ii) engineering an improved platform for testing anti-insect bioactivity; (iii) testing the activity of other plant triterpenes proposed to have anti-insect activity; (iv) production and anti-insect screening of new-to-nature molecules; (v) scaled up production of azadirone for evaluation of biological activity and mode of action.

Several tasks will be done with industry partners, aiming towards future commercial, social and environmental impact. The underlying tools and resources will be relevant for the production of many other molecules and will be made available to the community.

Publications

10 25 50
 
Description Many small molecules or natural products produced by animals, plants and other organisms have utility in health and industry. However, access to these molecules can have negative consequences such as over-exploitation of the species in which that molecule is found, or environmental impacts from chemical manufacturing processes. Furthermore, many natural products are structurally complex and cannot be accessed by chemical synthesis, at least at commercial scale. This proposal focusses on the production of a group of structurally related triterpenoid molecules, some of which have uses in healthcare and others which have potential as pollinator-friendly alternatives to pesticides. These include: i) squalene, widely used to improve the effectiveness of drugs and the immune response to antigens, of which global demand is still partly met by extraction from sharks; ii) steroids used in medicine for treating inflammation and cancer; iii) triterpenoids found in plants that prevent insect-feeding and are of interest to industry as environmentally sustainable crop protection agents.

This project aims to demonstrate how a plant can be used as a light-powered manufacturing platform for producing squalene and squalene-derived molecules. Our efforts are focussed on optimising yields; demonstrating that production can be scaled up; demonstrating the utility of compounds that are not yet commercially available; and investigating the technical and economic feasibility of large-scale production.

Progress against work packages:

WP1. Plastidial production of squalene in both the industrial tobacco line K326 and N.benthamiana has been achieved. The stability of the squalene production in the N.benthamiana lines is being assessed to ensure consistent production for up scaling in WP3. Intragenic N.benthamiana lines containing 1-deoxy-D-xylulose-5-phosphate synthase (DXS) with farnesyl pyrophosphate (FPP) and squalene synthase have been generated and both biochemical and molecular characterisation underway. Vectors targeting DXS Synthase and IPP isomerase using programmable transcriptional activation approaches have been generated and transformation is underway. These approaches are targeting the generation of increased precursor supply for optimal squalene production.

WP2. We have cloned standard parts of candidate transporters (Task 2.1). We have tested edited lines of N. benthamiana with mutations in sesquiterpene biosynthesis genes and found that we are able to obtained increased yield of triterpenes (Task 2.2). We have examined how the use of different combinations of 3' and 5' UTRs can affect the yield of translated protein. We have further examined whether the incorporation of a temperature-sensitive element (a "thermoswitch") within the 5' UTR can be used to induce expression in response to a temperature shift (Task 2.3). We have constructed multi-gene vectors containing the best performing cholesterol pathway and confirmed their capacity to increase cholesterol production in N. benthamiana (Task 2.4). We have cloned diosgenin biosynthesis genes from Dioscorea zingiberensis and confirmed their capability to produce diosgenin in N. benthamiana (Task 2.4) following transient agroinfiltration. We have explored other sterols which can be produced using our sterol production platform through different combinations of sterol biosynthesis genes in agroinfiltration experiments (Task 2.4).

WP3. Trials with industrial tobacco K326 producing squalene have been initiated in collaboration with Bridge Farm Bioscience (BFB) and Innovation Agri-Tech group (IAG). In the case of BFB this includes 1000 plants and supercritical fluid extraction. IAG group have generated preliminary N. benthamiana biomass using their aeroponic system and their proprietary growth frames. WP3 - We have made and delivered CRISPR-editing constructs to introduce loss of function mutations in acyl sugar transferases into edited low-alkaloids lines of N. benthamiana (Task 3.2). We have grown and collected tissues from Bryonia dioica for metabolomics and transcriptomics (Task 3.4).
Exploitation Route This research will deliver new data and techniques related to metabolites and metabolic engineering, and make enzymes, pathways and plant-derived/inspired molecules, more accessible to the academic community. It will shed light on structure-activity relationships and modes of action of triterpenoid bioactives, including anti-insect compounds. The raw data, molecular tools, large-scale metabolomic data and physico-chemical data generated will be of immediate benefit to other researchers and will be made available as described in the data management plan.

Dissemination of the findings to the scientific community will be achieved through (i), peer reviewed publications after potential IP capture and (ii), international and national oral and poster presentations at scientific meetings. The EBioAct team has a strong publication record and an equally strong record of contributing to conferences and workshops. The programme will use a number of advanced platforms including metabolomics (JIC and RHUL), sequencing and bioinformatics (EI), and insectary (JIC). The use of these platforms and the expertise developed will contribute to regional and UK capacity, attracting further funding and international collaborations.
Sectors Agriculture

Food and Drink

Education

Manufacturing

including Industrial Biotechology

Pharmaceuticals and Medical Biotechnology

 
Description An evaluation leading to a commercial licence has been established between RH and Bridge Farm Bioscience.
First Year Of Impact 2025
Sector Agriculture, Food and Drink,Education,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology
 
Description Member, UK Engineering Biology Steering Group (not the Engineering Biology Advisory Panel
Geographic Reach National 
Policy Influence Type Participation in a guidance/advisory committee
URL https://www.gov.uk/government/groups/engineering-biology-advisory-panel
 
Description Engineering gene regulation in plants to yield predictable expression
Amount £772,877 (GBP)
Funding ID APP36048 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 04/2025 
End 04/2028
 
Description Global Center: International Research Center for Enhancing Plant Resilience
Amount £2,124,544 (GBP)
Funding ID APP41752 
Organisation Biotechnology and Biological Sciences Research Council (BBSRC) 
Sector Public
Country United Kingdom
Start 04/2025 
End 04/2030
 
Description "A million shades of green: Harnessing plant metabolic diversity for therapeutic applications" 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact SCI Engineering Biology Conference, theme of translation out of academia into industry.
Year(s) Of Engagement Activity 2024
 
Description Agritech Careers Event 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact We set up a day for A Level science students to come and learn about the diversity of careers in the Agritech sector. The students heard about current research projects into biofortification of foods for health, ecological studies into soil microbes for plant growth and the importance of germplasm banks for preserving genetic diversity for research. They visited field trials to see plant experiments in action looking at things like improved drought tolerance and saw a drone display to find out how this, along with satellites are enabling the development of precision agriculture. We ran a workshop on gene editing and showed examples of how gadgets such as Nitrogen sensors made for research in the lab can be scaled up to benefit farmers managing nutrients on crops. The day is designed to inspire young people and give them ideas on where their career paths in science could take them.
Year(s) Of Engagement Activity 2024
 
Description Anne Osbourn Novozymes Prize Symposium - 'A million shades of green: Understanding and harnessing plant metabolic diversity' 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact This Novozymes Symposium was focused on cutting edge research in understanding and harnessing plant metabolic diversity. Plants are chemical engineers par excellence, collectively making a vast array of structurally diverse natural products. These molecules have important ecological functions in nature. They are also important to humans for food, health and other industrial applications. The rapidly growing body of available plant genome sequence data is leading to a marked acceleration in the discovery of new biosynthetic pathways and chemistries. The focus of the symposium was on plant natural products - biosynthesis, function, mechanisms of metabolic diversification, and metabolic engineering. It included exciting talks from 12 invited speakers - experts in computational biology, integrated 'omics, biochemistry, metabolic biology, plant diversity and evolution, a mix of early career group leaders and more established research scientists from Europe, Asia and North America. Participants had ample opportunity to enjoy good food and networking in the coffee breaks, at lunch and dinner, and during the poster sessions. Registration was free for all attendees. Two publications have been generated as an outcome of this symposium, one already published in PLOS Biology, and another under submission (a commissioned highlight review for EMBO J, written by a team of five postdoctoral researchers from the Osbourn lab).
Year(s) Of Engagement Activity 2024
URL https://www.tilmeld.dk/anneosbournnovozymesprizesymposium
 
Description Article on Spin out - Hothouse Therapeutics 
Form Of Engagement Activity A magazine, newsletter or online publication
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Article published in Biosciencetoday - New spin-out at Norwich Research Park harnessing plant power for next generation drugs
Year(s) Of Engagement Activity 2024
URL https://www.biosciencetoday.co.uk/new-spin-out-at-norwich-research-park-harnessing-plant-power-for-n...
 
Description Careers Talk for Gatsby Plant Science Network 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Undergraduate students
Results and Impact Presented a careers talk on plant science and science communication for a group of Undergraduate students at the Gatsby Training Weekend.
Year(s) Of Engagement Activity 2024
 
Description College open days 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact College open days three per year Prof Fraser talk on Squalene and Engineering Biology.
Year(s) Of Engagement Activity 2025
 
Description Course for school pupils (Cambridge) 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Schools
Results and Impact Talking and generally participating at "You be the chemist" Event in Cambridge aimed at attracting high school students to chemistry.
Year(s) Of Engagement Activity 2024
 
Description Discussion with Counsellor Kay Mason Billig - Leader of Norfolk County Council 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Policymakers/politicians
Results and Impact Visit to discuss site development
Year(s) Of Engagement Activity 2024
 
Description Hosted school visit to our institute 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact We worked with the Country Trust to host a group of children from a local Primary school to visit the John Innes Centre to do some experiments in the training lab on natural products. The children were very excited to come into the lab and enjoyed wearing lab coats and goggles and using real science equipment. We had lots of PhD students help with the activity and the children liked chatting to them about what it's like to be a scientist.
Year(s) Of Engagement Activity 2024
 
Description Norwich Science Festival 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Public/other audiences
Results and Impact Norwich Science Festival; interacting with the general public, Making Molecules
Year(s) Of Engagement Activity 2024
 
Description Round Table International Polio Day presentation 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Public/other audiences
Results and Impact A presentation entitled "Polio - is the end near?" to the Norwich Rotary Club
Year(s) Of Engagement Activity 2024
 
Description School visit 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact School talk and practical provided by Dr Enfissi to school pupils on Engineering BIology.
Year(s) Of Engagement Activity 2025
 
Description Sci Comm East Conference Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Professional Practitioners
Results and Impact Ran a Science Art and Writing workshop at Sci Comm East Conference for people interested in creative approaches to public engagement. The participants worked through a plant natural product activity to learn how to use science topics to explore real research and then extend learning through creative writing and art.
Year(s) Of Engagement Activity 2024
 
Description Science Art and Writing Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact We visited a local Infant school to run a Science Art and Writing Project on the theme of microbes. The children explored the categories that make things defined as 'living' and were then presented with some dried bakers yeast and a fresh block of yeast and tasked to find out if it was alive. Using sugar as food, warmth and water they set up experiments to test this and were amazed to see the yeast changing and growing before their eyes! They found out that yeast also respires as they captured carbon dioxide from the yeast to inflate balloons and then they worked in groups to utilise the yeast to make crumpets which the teachers cooked and the children enjoyed with butter and jam! They further explored the concepts and new vocabulary though poetry writing and visual art activities, including printing with paint and crumpets.
Year(s) Of Engagement Activity 2024
 
Description Science Art and Writing Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact We visited a local Primary school to run a Science Art and Writing Project on the theme of the plant rhizosphere. The children explored the plant diversity in their school grounds and looked for leguminous plants to dig up. They washed roots of grass and clover plants and then used microscopes to look for root nodules. Using stained cells they learned about the symbiotic relationship that plants have with microbes in the soil that enable them to access nutrients more effectively. They further explored the concepts and new vocabulary though poetry writing and visual art activities.
Year(s) Of Engagement Activity 2024
 
Description Science Art and Writing Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact We visited a local Primary school to run a Science Art and Writing Project on the theme of microbes. The children explored the scale of microbes and the places in which they live. They found out that microbes make lots of important chemicals that humans rely on. They were given labcoats and mini lab books and rotated around 4 different activity stations, including chromatography, soil plating & microscopy to earn stickers for their books. They further explored the concepts and new vocabulary though poetry writing and visual art activities.
Year(s) Of Engagement Activity 2024
 
Description Science Art and Writing Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact We visited a local Primary school to run a Science Art and Writing Project on the theme of natural products from nature. The children explored the diversity of microbes in the environment and the chemicals they make. Using role play to understand how these chemicals enable microbes to 'communicate' when forming colonies or competing for resources, they enjoyed becoming microbes and using chemical cue's to act out different scenarios. The class then learned about useful chemicals made by microbes in the soil and played a card game to build a compound that is a potential new antibiotic. They further explored the concepts and new vocabulary though poetry writing and visual art activities.
Year(s) Of Engagement Activity 2024
 
Description Science Art and Writing Workshop 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Local
Primary Audience Schools
Results and Impact We visited a local Primary school to run a Science Art and Writing Project on the theme of natural products from plants. The children explored the diversity of natural products and had a go at extracting colour pigments from a variety of flowers and used acid/base reactions to identify chemicals. Then they learned about inflammation in our bodies and how some medicines have been developed to target this. We looked at boswellic acid which is extracted from frankincense trees and is a potent anti-inflammatory drug and passed around some frankincense for the children to feel and smell. The final experiment gave the children a mock ELISA assay plate and a selection of plant extract samples which they had to test for activity as anti-inflammatories. They further explored the concepts and new vocabulary though poetry writing and visual art activities.
Year(s) Of Engagement Activity 2024
 
Description Science, Art and Poetry activity 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Delegates at the Anne Osbourn Novozymes Prize Symposium held at the John Innes Centre on Sep 9th and 10th 2024 participated in plant natural product-themed art and poetry activities run by the SAW Trust, during the refreshment and poster sessions. Colour pigments, ice cubes and diffusion were used to create flower-like patterns that were added to a display that grew over the course of the event and acrostic poems using key words related to the research topics were generated by people each adding a line. These were performed during the closing remarks of the event as a collaborative piece. The activities created an opportunity for delegates to work together, create and play which fostered an atmosphere for relaxed dialogue and a chance to consider novel approaches to science communication.
Year(s) Of Engagement Activity 2024
URL https://sawtrust.org/
 
Description Seminar - "Harnessing plant metabolic diversity for food and health applications" 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact Seminar given at VIB-UGent Center for Plant Systems Biology - Title: "Harnessing plant metabolic diversity for food and health applications" on 22nd February 2024 as part of a wider visit to the Center.
Year(s) Of Engagement Activity 2024
 
Description Talk and practical demonstartion at college open day Dr Marilise Nogueira 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Public/other audiences
Results and Impact At the college open days to approximately 50 individuals talks and equipemnt demonstrations were made on Engineering Biology.
Year(s) Of Engagement Activity 2024