Production systems bird welfare and endemic disease affect the susceptibility of chickens to Campylobacter
Lead Research Organisation:
University of Liverpool
Department Name: Institute of Infection and Global Health
Abstract
Campylobacter spp. are extremely important food borne enteropathogenic bacteria, estimated to cause over 600,000 cases of infection in the UK each year with around 100 deaths. It is estimated that Campylobacter infections cost the UK economy around £1 billion per year. Infection is characterised by acute and sometimes bloody diarrhoea, particularly in children. The last few years have seen a marked rise in cases in compromised elderly populations and in such people, particularly those with bowel cancer, infection can be fatal. Chicken meat is the most important source and vehicle for human Campylobacter infections and around 80% of chickens on sale in the UK are Campylobacter-positive. Campylobacter are natural inhabitants of the intestinal tract of chickens and other food animals. Contamination of chicken meat takes two forms. Carcass surfaces can carry high levels of Campylobacter and this can lead to cross-contamination in both domestic and commercial catering. This is an important risk factor for infection. However, and perhaps more importantly, Campylobacter have been recovered from deep muscle tissues of up to 27% of chickens tested. Furthermore, liver tissues are also commonly contaminated. In these tissues the bacteria will be better protected from the effects of cooking. Undercooked chicken meat and chicken liver pate are internationally important vehicles of Campylobacter infection. To improve public health in the UK it is essential that the number of contaminated chickens on sale is reduced. The proposed research will examine the different systems in which UK chickens are grown to identify cost-effective farm-based control options. Our work will focus on chickens reared intensively in housed systems as these comprise ~90% of the UK market. The work will be in collaboration with the three biggest poultry producers in the UK and all the major UK food retailers are giving financial support. The proposed research builds on past studies which showed that chickens (broilers) reared under higher welfare systems are less likely to have Campylobacter than birds reared more intensively. The higher welfare systems generally use slower-growing birds and stock houses with fewer birds than the more intensive systems. Our work showed that birds reared in the more intensive system had poorer welfare, as shown by high rates of endemic disease and general health and leg problems. This might explain why these birds were more likely to be Campylobacter-positive, as birds compromised by poor health and/or welfare are more susceptible to these bacteria. These differences might be due to the birds used and/or the in-house environment and we will determine this. Our field work might also indicate that the slower-growing bird types may be inherently more Campylobacter-resistant. We will conduct longitudinal studies on flocks reared under different systems and determine when birds first become Campylobacter-positive and relate this to changes in bird health and welfare. We will also determine whether the spread of Campylobacter from the intestine of the birds to edible tissues like liver occurs on farm and if it is linked to poor welfare for endemic disease. Our aim is to provide the UK poultry industry with science-based and cost-effective control options, which will help it meet customer demands and comply with forth-coming EU legislation aimed at reducing the number of chickens that are Campylobacter-positive.
Technical Summary
Chicken is the source of ~80% of human Campylobacter infections. The bacteria are found on carcass surfaces at high levels and in muscle and liver tissues. Undercooked chicken meat is an important vehicle of Campylobacter infection. It is essential that the number of contaminated chickens is reduced. The proposed research will examine different intensive systems in which UK chickens are grown and determine reasons for the observed differences in Campylobacter status. This project results from a direct request from the UK poultry industry. This proposal brings together modellers, microbiologists, molecular biologists, retailers and poultry producers in a unique combination to address global risks to human health associated with interactions between broiler production systems, endemic disease and physiological state of birds. Our past work showed that chickens reared under higher welfare systems are less likely to have Campylobacter than standard birds. The higher welfare systems use birds that grow more slowly and which are stocked at a lower density. As well as lower Campylobacter levels, the higher welfare birds had better health and this may protect them against Campylobacter. We seek to determine, through field studies, which of bird genotype/growth and/or the in-house environment determine Campylobacter status and to identify the mechanisms by which Campylobacter leave the chicken gut and infect edible tissues. We will use a combined modelling and molecular approach to investigate factors that improve resistance to Campylobacter, reduce risk of colonization and extra-intestinal spread in UK broilers. We will undertake laboratory studies to determine the susceptibility of commonly used broiler chickens to C. jejuni and the major endemic poultry pathogen avian pathogenic E. coli (APEC). Infection with E. coli not only increases the risk of broilers having Campylobacter, but is also strongly correlated with spread from the gut.
Planned Impact
Campylobacter is the most important food borne zoonosis in the UK and the wider EU. In the UK it is estimated that there are 600000 cases of infection in the UK each year and that Campylobacter infection costs the UK economy ~£1 billion per year. Chicken is overwhelmingly the most important vehicle for human infection and is believed to be responsible for up to 80% of infections. Furthermore, ~80% of chickens on sale in the UK are Campylobacter-positive. Contaminated chicken presents two health threats. Surface contamination levels can reach 109 cfu per carcass and contamination of deep muscle and liver tissues has been reported in up to 27 and 60% of samples tested respectively. The project seeks to better understand the impact of broiler chicken production systems, the resistance of the birds to infection with Campylobacter and its in vivo behaviour in the bird. We have shown that birds reared in higher welfare housed systems such as the RSPCA-backed Freedom Foods scheme, have lower Campylobacter levels and fewer risk factors for Campylobacter colonisation such as endemic diseases and poor gut health than birds reared in standard production systems. We seek to determine why these commonly used production systems differ so markedly and we will be determining the single and combined impacts of bird genotype/growth rate, endemic disease and bird stocking density, which affects the in-house environment. By comparing the different systems, we will be able to identify farm-based control measures that will reduce levels of Campylobacter in UK poultry and also improve the welfare of the birds. By better understanding the epidemiology of a major poultry endemic disease, APEC, measures can be identified to better control it. This will improve bird health and welfare, increase industry profitability and reduce the carbon footprint of UK poultry production. The project is in partnership with the UK poultry industry and all major UK retailers. Thus the beneficial impacts of our work can quickly be transferred to stakeholders.
Organisations
Publications
Bronowski C
(2017)
Campylobacter jejuni transcriptome changes during loss of culturability in water.
in PloS one
Chaloner G
(2014)
Dynamics of dual infection with Campylobacter jejuni strains in chickens reveals distinct strain-to-strain variation in infection ecology.
in Applied and environmental microbiology
Collingwood C
(2014)
Is the Concept of Avian Pathogenic Escherichia coli as a Single Pathotype Fundamentally Flawed?
in Frontiers in veterinary science
De Vries SP
(2017)
Genome-wide fitness analyses of the foodborne pathogen Campylobacter jejuni in in vitro and in vivo models.
in Scientific reports
Esson D
(2017)
Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape.
in Microbial pathogenesis
Humphrey S
(2014)
Campylobacter jejuni is not merely a commensal in commercial broiler chickens and affects bird welfare.
in mBio
Kemmett K
(2014)
The contribution of systemic Escherichia coli infection to the early mortalities of commercial broiler chickens.
in Avian pathology : journal of the W.V.P.A
Description | The research has shown that Campylobacter can cause mild disease in some commonly used chicken breeds. This can lead to diarrhoea and as a result of the birds standing on wet litter, it can lead to damage on their feet and legs. We have shown how Campylobacter spreads through a flock and that there is huge variation between different strains or types of Campylobacter in where they infect and the risk they pose in causing human disease. We have also shown the 'natural' immune response in the chicken is not one that clears infection from the gut, but prevent Campylobacter moving from the gut |
Exploitation Route | 1. Improvements to chicken breeding can be made to reduce the welfare impact of Campylobacter infection as well as reducing the risk of human infection. 2. Improved understanding of the immune response to infection will underpin vaccine development. 3. Better understanding of where Campylobacter may be located in the chicken gut may help reduce the risk of carcass contamination in processing. |
Sectors | Agriculture Food and Drink Healthcare |
Description | Understanding the impact of Campylobacter on chicken welfare is a factor in driving change in chicken breeds used for meat production. We have shown for the first time that Campylobacter is more than a' harmless commensal' and impacts on the health and welfare of the birds themselves. We also have shown the infection ecology of Campylobacter is very strain dependent. Previously it was assumed colonisation was largely in the lower intestinal tract. We have shown that colonisation can occur in the crop and the small intestine with some isolates. Controls in processing have been based upon the bacterium being localised in the caeca. The finding that Campylobacter is more widespread in the birds gut has important implications for control in processing. We have also determined there is considerable variation in how invasive isolates are in both the chicken and human epithelial cell lines meaning some isolates pose a greater risk of extra intestinal spread, again having direct implications in the food chain risk. Impacts fed directly to industry via stakeholder meetings to producers, supermarkets and breeding companies as well as through publication. The work was also presented directly to the Food Standards Agency Working Group on Campylobacter. Our development of in vivo models has also led directly to a research contract with DuPont on probiotics in Campylobacter infection |
First Year Of Impact | 2014 |
Sector | Agriculture, Food and Drink |
Impact Types | Economic |
Description | Caecal Microbiome Transplant:a novel approach to Campylobacter control and improving broiler chicken gut heath |
Amount | £268,745 (GBP) |
Funding ID | BB/R008914/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2018 |
End | 03/2020 |
Description | Industrial Award |
Amount | £152,000 (GBP) |
Organisation | DuPont |
Sector | Private |
Country | United States |
Start | 03/2015 |
End | 09/2016 |
Description | Rapid diagnostics and control strategies for enteric bacterial pathogens in backyard and commercial poultry production in Thailand and the Philippines |
Amount | £916,765 (GBP) |
Funding ID | BB/R013136/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2018 |
End | 03/2021 |
Title | Avian Infection Models |
Description | Development and refinement of novel infection models to study infection, co-infection and transmission by food borne bacterial pathogens |
Type Of Material | Model of mechanisms or symptoms - non-mammalian in vivo |
Year Produced | 2013 |
Provided To Others? | Yes |
Impact | Publications and directly funded industrial research |
Title | Data from: Cytokine responses in birds challenged with the human food-borne pathogen Campylobacter jejuni implies a Th17 response |
Description | Development of process orientated understanding of cytokine interactions within the gastrointestinal tract during an immune response to pathogens requires experimentation and statistical modelling. The immune response against pathogen challenge depends on the specific threat to the host. Here, we show that broiler chickens mount a breed-dependent immune response to Campylobacter jejuni infection in the caeca by analysing experimental data using frequentist and Bayesian structural equation models (SEM). SEM provides a framework by which cytokine interdependencies, based on prior knowledge, can be tested. In both breeds important cytokines including pro-inflammatory interleukin (IL)-1ß, , IL-4, IL-17A, interferon (IFN)-? and anti-inflammatory IL-10 and transforming growth factor (TGF)-ß4 were expressed post-challenge. The SEM revealed a putative regulatory pathway illustrating a T helper (Th)17 response and regulation of IL-10, which is breed-dependent. The prominence of the Th17 pathway indicates the cytokine response aims to limit the invasion or colonization of an extracellular bacterial pathogen but the time-dependent nature of the response differs between breeds. |
Type Of Material | Database/Collection of data |
Year Produced | 2016 |
Provided To Others? | Yes |
URL | https://datadryad.org/stash/dataset/doi:10.5061/dryad.7h3v1 |
Description | A twisted bugs life |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | Yes |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | Hands on presentation/exhibit at Liverpool's World Museum then at the national festival in London. Giant walk through gut to understand how Campylobacter make people ill and various activities to show how one can reduce their risk of infection. Much interest in how chicken can be source of infection and what can be done to reduce risks for adults and children |
Year(s) Of Engagement Activity | 2014 |
URL | http://www.bbsrc.ac.uk/society/exhibitions/gb-bioscience-festival/twisted-bugs-life.aspx |
Description | Brazil Poultry Industry meeting |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Lively discussion None as yet |
Year(s) Of Engagement Activity | 2014 |
Description | Christmas Lecture |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | Lot's of interest and questions about infectious disease and vaccination Interest in the lab's work. Amusement of colleagues to being dressed as Father Christmas and Rudolph |
Year(s) Of Engagement Activity | 2013 |
Description | Exchange visit Poultry Research an Diagnostic Dept, University of Georgia, Athens |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Professional Practitioners |
Results and Impact | Exchange visit to the University of Georgia to meet with researchers and vets working on foodborne pathogens and poultry research, to discuss work from this and other projects and to discuss future collaborations around Campylobacter in poultry in the UK and the USA to compare the different production systems and the epidemiology and infection biology of campylobacter in such systems. Professor Paul Wigley (PI) presented a overview of current work at Liverpool also covering this project |
Year(s) Of Engagement Activity | 2016 |
Description | Food Safety Colouring Book- 'Munchin' Microbes' |
Form Of Engagement Activity | A magazine, newsletter or online publication |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Undergraduate students |
Results and Impact | With an illustrator we have produced a colouring book around microbial food safety. it is targeted for 16-24 year olds as a group with a high risk of foodborne disease due to poor practice and lack of knowledge. So far we have distribute 1500 copies to universities and schools throughout the UK. |
Year(s) Of Engagement Activity | 2019,2020 |
Description | Food Standards Agency Campylobacter Working group |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Policymakers/politicians |
Results and Impact | Much interest in what was presented. Presented scientific evidence to working group of greater potential problems in Campylobacter control than previously thought, but that immunological intervention may work Interest in having additional information and a 'lay version' of subsequently published papers |
Year(s) Of Engagement Activity | 2013 |
Description | Healthy tums, happy bums |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | Lot's of interest in food safety and what can be done to safer handle and prepare food General public interest |
Year(s) Of Engagement Activity | 2013 |
URL | http://news.liv.ac.uk/2013/06/14/food-safety-on-the-menu-at-liverpools-world-museum/ |
Description | Poultry Disease Group |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | Contribution to Poultry Disease Group Forum through presentations and discussion. Excellent forum to link academia, industry and policymakers Frequent requests for information, links to industry |
Year(s) Of Engagement Activity | 2010,2011,2012,2013 |
Description | Presentation to CEVA Animal health |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Meeting/visit to CEVA in Bordeaux to discuss development of poultry vaccines with their international poultry committee. This has become recurring activity with presentations made twice in 2016 and further made for July 2017 |
Year(s) Of Engagement Activity | 2015,2016 |
Description | Presentation to MSD Animal health |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | Good discussion with regard to future potential collaboration Sharing of information on immune response to Salmonella |
Year(s) Of Engagement Activity | 2012 |
Description | Presentations to representatives from poultry breeders, producers and retailers |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | The talks stimulated much discussion towards methods of reduction of Campylobacter and improvements that could be made to health and welfare Retailers and producers highly interested in research presented and how it may be applied. Improved understanding of impact of infection on animal welfare |
Year(s) Of Engagement Activity | 2010,2011,2012,2013,2014 |
Description | Press releases and interviews relating to foodborne infections |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Press releases appeared in multiple general and specific outlets. In particular over 20 interviews were given during the 2011 E. coli O104 outbreak including national TV interviews and international radio and print media interviews. Increased interest in the group's activities and invitations to speak at conferences. Further media interviews and comments especially for BBC news website. |
Year(s) Of Engagement Activity | 2009,2011,2012,2013,2014 |
Description | School Visit-Neston |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | Primary school visit explaining about animals using bones in a demonstration. Was enjoyed by children who understood more about the biology of current and extinct animal species None yet |
Year(s) Of Engagement Activity | 2014,2015,2016 |
Description | Talks on infectious disease to 6th form and parents & talk to 5th and 6th form on use of animals in science |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Schools |
Results and Impact | General discussion afterwards. Specific interest from some individuals Students undertaking work experience in lab. Applications to our degree programmes |
Year(s) Of Engagement Activity | 2007,2009,2010 |
Description | Thai Poultry Industry Meeting |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Many questions but limited time Questions on what future contra strategies may be |
Year(s) Of Engagement Activity | 2013 |
Description | Workshop and visits to Corpoica, Pollo Fiesta, Colombian NIH and Biotech Institutes in Bogota, Colombia on foodborne pathogens and food safety |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | The key objective of our visit was to understand the structure and challenges faced by the Colombian poultry industry in controlling the foodborne pathogens, Campylobacter and Salmonella, and to disseminate our findings and the approaches that we have taken within the UK and ultimately to explore translation of work to improving food safety in Colombia. This was facilitated through meetings with academics and the poultry industry, as well as visiting poultry farms and slaughterhouses, which provoked discussion around biosecurity on the farms and how this could be improved as well as interventions within the slaughterhouse. These included the production company Pollo Fiesta, researchers from Corpoica, Universities and the National Institute for Health. Alex Royden a BBSRC DTP PhD student also spent time at Corpoica and helped train staff in some of our isolation procedures developed here which helped overcome some of the issues they had with contamination when trying to isolate Campylobacter. |
Year(s) Of Engagement Activity | 2017 |
Description | Workshops on Campylobacter and Salmonella Bangkok and Pattaya, Thailand |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other academic audiences (collaborators, peers etc.) |
Results and Impact | Workshops promoted discussion and development of Thai research programme Visiting Thai students |
Year(s) Of Engagement Activity | 2012,2013 |