14-ERASynBio Engineering the chloroplast of microalgae as a chassis for the direct production of solar fuels and chemicals
Lead Research Organisation:
University of Oxford
Department Name: Oxford Chemistry
Abstract
One of the greatest challenges of the 21st century is the sustainable supply of energy and chemicals from renewable resources. Driven by solar energy, chloroplasts function in nature as the most efficient minimal cell factories for generating chemical energy through the oxidation of water, but they are naturally tuned towards the fixation of carbon for building-up cellular components. Our long-term goal is to design a synthetic chloroplast in the "green yeast" Chlamydomonas reinhardtii that can be used as a chassis for the sustainable production of biofuels and chemicals. To achieve such an ambitious goal, we will develop various tools that will be indispensable to construct our chassis from a bottom-up approach. First, we will develop well-defined microalgal BioBricks to allow an efficient plug-in of protein and metabolic circuits in the chloroplast. Secondly, we will generate suitable Chlamydomonas strains by re-directing the photosynthetic electron circuits. Thirdly, we will engineer key players of the photosynthetic chain following the principles of Darwinian evolution for controlling energy delivery. State-of-the-art protein film electrochemistry of the engineered biocatalysts will guide the design processes. As a proof-of-principle, we will then use the chloroplast of optimised strains for assembling the BioBricks with the engineered photosynthetic chain players to produce bio-hydrogen and alkanes as by-products from light and water. This project is to be considered as a proof of principle and will step-up the development of novel biotechnology concepts that will establish "solar-cell chloroplast factories". The design and construction of a chloroplast chassis following synthetic biology principles will allow the sustainable production of biofuels and valuable chemicals, paving down the grounds for a carbon-neutral bio-economy that can supply our society with an increasing energy demand, while mitigating the damaging effects of climate change.
Technical Summary
One of the greatest challenges of the 21st century is the sustainable supply of energy and chemicals from renewable resources. Driven by solar energy, chloroplasts function in nature as the most efficient minimal cell factories for generating chemical energy through the oxidation of water, but they are naturally tuned towards the fixation of carbon for building-up cellular components. Our long-term goal is to design a synthetic chloroplast in the "green yeast" Chlamydomonas reinhardtii that can be used as a chassis for the sustainable production of biofuels and chemicals. To achieve such an ambitious goal, we will develop various tools that will be indispensable to construct our chassis from a bottom-up approach. First, we will develop well-defined microalgal BioBricks to allow an efficient plug-in of protein and metabolic circuits in the chloroplast. Secondly, we will generate suitable Chlamydomonas strains by re-directing the photosynthetic electron circuits. Thirdly, we will engineer key players of the photosynthetic chain following the principles of Darwinian evolution for controlling energy delivery. State-of-the-art protein film electrochemistry of the engineered biocatalysts will guide the design processes. As a proof-of-principle, we will then use the chloroplast of optimised strains for assembling the BioBricks with the engineered photosynthetic chain players to produce bio-hydrogen and alkanes as by-products from light and water. This project is to be considered as a proof of principle and will step-up the development of novel biotechnology concepts that will establish "solar-cell chloroplast factories". The design and construction of a chloroplast chassis following synthetic biology principles will allow the sustainable production of biofuels and valuable chemicals, paving down the grounds for a carbon-neutral bio-economy that can supply our society with an increasing energy demand, while mitigating the damaging effects of climate change.
Planned Impact
The sustainable supply of renewable energy is a major concern of almost all European Societies. Since our project aims to set down important steps towards the development of an artificial chloroplast that can be used as a chassis for the sustainable production of renewable chemicals and biofuels driven by solar energy, Sun2Chem represents an important step towards meeting European needs not only for the right development of a bio-economy, but also for social justice in terms of environment protection and sustainability.
To reach this goal, we will take a bottom-up engineering approach for the development of suitable algal BioBricks (WP1), which will be deposited in the international Genetic Engineered Machines (iGEM) registry. Thus, our results will be partially disseminated at the famous iGEM competition by undergraduates who will be supervised by doctoral and postdoctoral researchers. We will also have doctoral and postdoctoral students working on the metabolic engineering of the photosynthetic pathway (WP2, WP5) as well as the engineering of the hydrogenase, ferredoxin and FNR (WP3) and their characterisation via protein film electrochemistry (WP4).
Regarding intellectual property rights, it will be important to first patent the improved pathways and biocatalysts obtained in WP2 and WP3 (if the deliverables of WP1 are used for iGEM they cannot be patented) as well as WP5, which is the integration of WP1-4. Patenting issues will be handled according to the rules at each of the participating partners organisations. Upon patenting the findings, therefore, their publication in suitable international well-renowned journals preferentially under an open access scheme will follow. Note that in each WP, every milestone lists a set of deliverables, which themselves correspond to a defined problem that upon resolution can be transformed into concise publications. After publishing, we will disseminate the results not only at the local media but also at scientific meetings. The results obtained in all WPs will be generally disseminated at conferences related to synthetic biology, protein as well as metabolic engineering and more specifically at hydrogenase, electrolytic solar fuel and solar-based renewable energy meetings.
We expect to produce significant results to control electron delivery from Photosystem 1 in the chloroplast of C. reinhardtii towards the production of hydrogen and alkanes. Although we may encounter difficulties in engineering a completely O2-tolerant hydrogenase (at atmospheric oxygen concentration of 21%), preliminary results from Partner 1 indicate that mutating the active site of HydA1 can notably improve its tolerance against oxygen. Achieving this goal will be important for patenting the improved biocatalyst and initiate the first experimental trials both in vitro (WP4) and in vivo (WP5), which may even result in a spin-off company to fully realise the technological potential of H2 production (the strong oxygen sensitivity of hydrogenases hinders their industrial use owing to the high-associated costs of producing the required biocatalyst in large-scale). If we can realise the development of this technological feature, there will be certainly a long-term societal benefit: Solar-driven sustainable production of clean energy by algae that do not compete with agricultural land while mitigating the damaging effects of climate change. Upon reaching such a scenario, we would then assess in more detail biosafety as well as biosecurity issues and explore novel interfaces between science and society for the public acceptance of this special kind of genetically modified microorganisms.
To reach this goal, we will take a bottom-up engineering approach for the development of suitable algal BioBricks (WP1), which will be deposited in the international Genetic Engineered Machines (iGEM) registry. Thus, our results will be partially disseminated at the famous iGEM competition by undergraduates who will be supervised by doctoral and postdoctoral researchers. We will also have doctoral and postdoctoral students working on the metabolic engineering of the photosynthetic pathway (WP2, WP5) as well as the engineering of the hydrogenase, ferredoxin and FNR (WP3) and their characterisation via protein film electrochemistry (WP4).
Regarding intellectual property rights, it will be important to first patent the improved pathways and biocatalysts obtained in WP2 and WP3 (if the deliverables of WP1 are used for iGEM they cannot be patented) as well as WP5, which is the integration of WP1-4. Patenting issues will be handled according to the rules at each of the participating partners organisations. Upon patenting the findings, therefore, their publication in suitable international well-renowned journals preferentially under an open access scheme will follow. Note that in each WP, every milestone lists a set of deliverables, which themselves correspond to a defined problem that upon resolution can be transformed into concise publications. After publishing, we will disseminate the results not only at the local media but also at scientific meetings. The results obtained in all WPs will be generally disseminated at conferences related to synthetic biology, protein as well as metabolic engineering and more specifically at hydrogenase, electrolytic solar fuel and solar-based renewable energy meetings.
We expect to produce significant results to control electron delivery from Photosystem 1 in the chloroplast of C. reinhardtii towards the production of hydrogen and alkanes. Although we may encounter difficulties in engineering a completely O2-tolerant hydrogenase (at atmospheric oxygen concentration of 21%), preliminary results from Partner 1 indicate that mutating the active site of HydA1 can notably improve its tolerance against oxygen. Achieving this goal will be important for patenting the improved biocatalyst and initiate the first experimental trials both in vitro (WP4) and in vivo (WP5), which may even result in a spin-off company to fully realise the technological potential of H2 production (the strong oxygen sensitivity of hydrogenases hinders their industrial use owing to the high-associated costs of producing the required biocatalyst in large-scale). If we can realise the development of this technological feature, there will be certainly a long-term societal benefit: Solar-driven sustainable production of clean energy by algae that do not compete with agricultural land while mitigating the damaging effects of climate change. Upon reaching such a scenario, we would then assess in more detail biosafety as well as biosecurity issues and explore novel interfaces between science and society for the public acceptance of this special kind of genetically modified microorganisms.
People |
ORCID iD |
Fraser Andrew Armstrong (Principal Investigator) |
Publications

Armstrong FA
(2016)
Guiding Principles of Hydrogenase Catalysis Instigated and Clarified by Protein Film Electrochemistry.
in Accounts of chemical research

Armstrong FA
(2018)
Protein Film Electrochemistry of Iron-Sulfur Enzymes.
in Methods in enzymology

Bachmeier A
(2015)
How Formaldehyde Inhibits Hydrogen Evolution by [FeFe]-Hydrogenases: Determination by 13 C ENDOR of Direct Fe-C Coordination and Order of Electron and Proton Transfers
in Journal of the American Chemical Society

Bachmeier A
(2015)
Solar-driven proton and carbon dioxide reduction to fuels-lessons from metalloenzymes.
in Current opinion in chemical biology

Evans RM
(2019)
The value of enzymes in solar fuels research - efficient electrocatalysts through evolution.
in Chemical Society reviews

Lampret O
(2019)
The final steps of [FeFe]-hydrogenase maturation.
in Proceedings of the National Academy of Sciences of the United States of America

Lampret O
(2020)
The roles of long-range proton-coupled electron transfer in the directionality and efficiency of [FeFe]-hydrogenases.
in Proceedings of the National Academy of Sciences of the United States of America

Megarity CF
(2016)
Electrochemical Investigations of the Mechanism of Assembly of the Active-Site H-Cluster of [FeFe]-Hydrogenases.
in Journal of the American Chemical Society

Morello G
(2019)
Efficient Electrocatalytic CO 2 Fixation by Nanoconfined Enzymes via a C3-to-C4 Reaction That Is Favored over H 2 Production
in ACS Catalysis

Pandey K
(2017)
Frequency and potential dependence of reversible electrocatalytic hydrogen interconversion by [FeFe]-hydrogenases.
in Proceedings of the National Academy of Sciences of the United States of America
Description | We have discovered how the final stage of assembly of the active site of a [FeFe]-hydrogenase is carried out (the maturation mechanism). We have measured important rate constants for hydrogen catalysis by [FeFe]-hydrogenases using electrochemical impedance spectroscopy. We have discovered how to achieve direct electrocatalysis by the photosynthetic NADP-reducing enzyme, and we are developing this as an invention (the 'Electrochemical Leaf') for nicotinamide cofactor recycling for enzyme-based organic synthesis. We have since discovered that the Leaf works because of a massive increase in the concentrations of enzymes through nanoconfinement. We have tested a system whereby an active oxidase located close to a [FeFe]-hydrogenase protects it from O2. We have elucidated the structural factors that control the near-final stages of assembly of the active site of [FeFe]-hydrogenases: amino acids responsible for the recognition and passage of the 2Fe complex into the apo-enzyme that houses the [4Fe-4S] cluster, just before the two components fuse together. We have demonstrated the importance of concerted proton-electron transfer in conferring electrocatalytic reversiblity by [FeFe]-hydrogenases. |
Exploitation Route | A patent has been secured, and industrial support is being sought for the Electrochemical Leaf. New insight into the detection of concerted proton-electron transfer in enzymes. |
Sectors | Chemicals,Energy,Manufacturing, including Industrial Biotechology,Pharmaceuticals and Medical Biotechnology |
Description | BBSRC Follow on Fund |
Amount | £197,917 (GBP) |
Funding ID | BB/P023797/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 06/2017 |
End | 12/2018 |
Description | How Hydrogenases Work at the Atomic Level |
Amount | £722,942 (GBP) |
Funding ID | BB/N006321/1 |
Organisation | Biotechnology and Biological Sciences Research Council (BBSRC) |
Sector | Public |
Country | United Kingdom |
Start | 03/2016 |
End | 03/2019 |
Title | ELECTRODES |
Description | An electrode (1), the electrode (1) comprises a substrate (4, 5) on which is located a porous layer of a conducting or semi-conducting oxide (6) and having located thereon Ferredoxin NADP Reductase (FNR) (3). The electrode (1) can be used to drive organic synthesis via nicotinamide cofactor regeneration. |
IP Reference | WO2017158389 |
Protection | Patent application published |
Year Protection Granted | 2017 |
Licensed | No |
Impact | Discovery of a fundamentally new way of driving enzyme cascades for organic synthesis. The discovery is of value for both practical and theoretical reasons. The science is explained in a 2019 'hot' paper in Angewandte Chemie. |
Description | Invited Lecture - OXF |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | Invited lecture at GRC on Metal Ions in Biology, Ventura, California, January 2017 |
Year(s) Of Engagement Activity | 2017 |
Description | Invited lecture |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | Invited lecture at the Ernst-Haage Symposium on Chemical Energy Conversion, Mulheim, Germany, Noverember 22-24, 2016 |
Year(s) Of Engagement Activity | 2016 |
Description | Invited lecture |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | Invited lecture at The 7th Life Science Symposium 'Bioenergy', Delft, Netherlands, May 10, 2016 |
Year(s) Of Engagement Activity | 2016 |
Description | Invited lecture |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Policymakers/politicians |
Results and Impact | Lecture at Workshop on Energy Materials Research, Berlin 10-11 October 2016 |
Year(s) Of Engagement Activity | 2016 |
Description | Invited lecture |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | Invited lecture at the Gerischer-Kolb Symposium, Reisenberg Castle, Germany, October 11-13, 2017 |
Year(s) Of Engagement Activity | 2017 |