Dissecting the mechanism by which glycosyltransferases calalyse mannosyl transfer
Lead Research Organisation:
University of Oxford
Department Name: Oxford Chemistry
Abstract
The linking of sugars to a variety of different proteins has an important influence on the function of cells. The biological catalysts or enzymes that speed up the reactions in which sugars are linked to other molecules are known as glycosyltransferases. Although these enzymes and are industrially and biologically important, they have not been extensively studied because they are difficult to produce in large amounts. In this project we will take advantage of our ability to produce significant quantities of glycosyltransferases that catalyse the transfer of the sugar mannose onto other molecules. The three dimensional structure of these enzymes will be determined and the information will be used to synthesise inhibitors of these biological catalysts and to use molecular engineering techniques to manipulate their biological properties.
Technical Summary
Although mannose-containing polymers are widespread in nature, there is a paucity of structural and mechanistic information on the enzymes that catalyze mannosyltransfer. Recent studies by our three groups [Flint et al. (2005) Nat. Struct. Mol. Biol. 12, 608-14] have begun to unravel the structural basis for the catalytic activity and plasticity of substrate recognition of the retaining GDP-Man transferase, mannosylglycerate synthase, which lays a foundation upon which to dissect mannosyl transfer. This application will build upon our studies on mannosylglycerate synthase and a significant additional body of preliminary data, of both retaining and inverting mannosyltransferases (including one of the key enzymes of glycobiology, dolichyl-phosphate -D-mannose synthase) to dissect the mechanism of action and specificity of mannosyltransferases. This will underpin the engineering of these enzymes to increase their utility as biosynthetic tools, underpin novel therapeutic strategies that target glycan decoration and, and, through the modulation of key enzymes that catalyse mannosyltransfer, provide profound insights into cellular function To date, there are no known selective inhibitors of any retaining glycosyltransferases with sufficient potency to allow modulation of the function of these enzymes in vivo. This void has hampered not only the understanding of the role of mannose decoration in biology, but also the exploitation of mannosyl transfer in drug design. The key goals that will be addressed in this project are: (a) Determine how structure dictates specificity and the mechanism of catalysis of mannosyltransferases (b) Exploitation of such information in the design of new enzyme inhibitors which reflect both structural and mechanistic features (c) Interrogation of the evolution of the mechanisms of mannosyl transfer, and its exploitation in the development of novel biocatalysts.
Publications
Parry AL
(2013)
'Multicopy multivalent' glycopolymer-stabilized gold nanoparticles as potential synthetic cancer vaccines.
in Journal of the American Chemical Society
Barry C
(2013)
'Naked' and Hydrated Conformers of the Conserved Core Pentasaccharide of N-linked Glycoproteins and Its Building Blocks
in Journal of the American Chemical Society
Chalker JM
(2011)
A "tag-and-modify" approach to site-selective protein modification.
in Accounts of chemical research
Doores K. J.
(2009)
A 'non-self' mimic of the natural epitope of anti-HIV antibody 2G12 shows enhanced antigenicity
in RETROVIROLOGY
Chalker JM
(2009)
A convenient catalyst for aqueous and protein Suzuki-Miyaura cross-coupling.
in Journal of the American Chemical Society
Grayson EJ
(2011)
A coordinated synthesis and conjugation strategy for the preparation of homogeneous glycoconjugate vaccine candidates.
in Angewandte Chemie (International ed. in English)
Iglesias-Fernández J
(2017)
A front-face 'SNi synthase' engineered from a retaining 'double-SN2' hydrolase.
in Nature chemical biology
Yang M
(2007)
A glycosynthase catalyst for the synthesis of flavonoid glycosides.
in Angewandte Chemie (International ed. in English)
Doores KJ
(2010)
A nonself sugar mimic of the HIV glycan shield shows enhanced antigenicity.
in Proceedings of the National Academy of Sciences of the United States of America
Davis B
(2009)
A silver-lined anniversary of Fleet iminosugars: 1984-2009, from DIM to DRAM to LABNAc
in Tetrahedron: Asymmetry
De Munari S
(2015)
A Triply Divergent Reagent for Glycoprotein Synthesis
in Israel Journal of Chemistry
Bernardes G
(2007)
A trisulfide-linked glycoprotein
in Chemical Communications
Boutureira O
(2009)
Accessible sugars as asymmetric olefin epoxidation organocatalysts: glucosaminide ketones in the synthesis of terminal epoxides.
in Organic & biomolecular chemistry
Lin YA
(2008)
Allyl sulfides are privileged substrates in aqueous cross-metathesis: application to site-selective protein modification.
in Journal of the American Chemical Society
Chalker Justin M.
(2011)
Allyl sulfides enable olefin metathesis in water and on proteins
in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
Goodfellow JJ
(2012)
An endoglycosidase with alternative glycan specificity allows broadened glycoprotein remodelling.
in Journal of the American Chemical Society
Patel MK
(2010)
Analysis of the dispersity in carbohydrate loading of synthetic glycoproteins using MALDI-TOF mass spectrometry.
in Chemical communications (Cambridge, England)
Hong SY
(2007)
Atomic-scale detection of organic molecules coupled to single-walled carbon nanotubes.
in Journal of the American Chemical Society
Lee Seung Seo
(2011)
Biosynthesis of nucleoside antibiotic tunicamycin proceeds via a unique
exo-glycal intermediate
in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
Wyszynski FJ
(2012)
Biosynthesis of the tunicamycin antibiotics proceeds via unique exo-glycal intermediates.
in Nature chemistry
Bernardes Goncalo J. L.
(2012)
Building well-defined glycoproteins
in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
Davis Benjamin G.
(2008)
CARB 17-Sugar and proteins
in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
Vaden Timothy D.
(2008)
CARB 24-Conformational landscapes of polysaccharides and glycopeptides: Spectroscopy and modeling of the building blocks
in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
Mayorkas N
(2011)
Carbohydrate hydration: heavy water complexes of a and ß anomers of glucose, galactose, fucose and xylose.
in Physical chemistry chemical physics : PCCP
Stanca-Kaposta EC
(2007)
Carbohydrate molecular recognition: a spectroscopic investigation of carbohydrate-aromatic interactions.
in Physical chemistry chemical physics : PCCP
Schuster HJ
(2015)
Chain-growth polyglycosylation: synthesis of linker-equipped mannosyl oligomers.
in Carbohydrate research
Campo VL
(2007)
Chemical and chemoenzymatic synthesis of glycosyl-amino acids and glycopeptides related to Trypanosoma cruzi mucins.
in Organic & biomolecular chemistry
Gamblin DP
(2008)
Chemical approaches to mapping the function of post-translational modifications.
in The FEBS journal
Díaz-Rodríguez A
(2011)
Chemical modification in the creation of novel biocatalysts.
in Current opinion in chemical biology
Chalker JM
(2009)
Chemical modification of proteins at cysteine: opportunities in chemistry and biology.
in Chemistry, an Asian journal
Chalker JM
(2010)
Chemical mutagenesis: selective post-expression interconversion of protein amino acid residues.
in Current opinion in chemical biology
Gamblin DP
(2008)
Chemical site-selective prenylation of proteins.
in Molecular bioSystems
Bernardes Goncalo J. L.
(2012)
Chemical site-selective protein modification: Development of a traceless vascular targeting ADC for cancer therapy
in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
Boutureira Omar
(2012)
Chemical site-selective radiolabelling of proteins using fluorosugars
in ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY
Simons J
(2009)
Conformational change and selectivity in explicitly hydrated carbohydrates
in Tetrahedron: Asymmetry
Cocinero EJ
(2008)
Conformational choice and selectivity in singly and multiply hydrated monosaccharides in the gas phase.
in Chemistry (Weinheim an der Bergstrasse, Germany)
Sagar R
(2012)
Conformational effects in sugar ions: spectroscopic investigations in the gas phase and in solution
in Chemical Science
Patel MK
(2013)
Control of phosphoryl migratory transesterifications allows regioselecive access to sugar phosphates.
in Organic letters
Pasparakis G
(2010)
Controlled polymer synthesis--from biomimicry towards synthetic biology.
in Chemical Society reviews
Chalker JM
(2012)
Conversion of cysteine into dehydroalanine enables access to synthetic histones bearing diverse post-translational modifications.
in Angewandte Chemie (International ed. in English)
Kreizman R
(2009)
Core-shell PbI2@WS2 inorganic nanotubes from capillary wetting.
in Angewandte Chemie (International ed. in English)
A Celik
(2007)
Creating new Tools for a Formic Acid Economy: Cloning & Structure of Novel Dehydrogenases
in in preparation
Gunnoo SB
(2014)
Creation of a gated antibody as a conditionally functional synthetic protein.
in Nature communications
Yamamoto K
(2012)
Creation of an a-mannosynthase from a broad glycosidase scaffold.
in Angewandte Chemie (International ed. in English)
Dumas A
(2015)
Designing logical codon reassignment - Expanding the chemistry in biology.
in Chemical science
Garnett JA
(2009)
Detailed insights from microarray and crystallographic studies into carbohydrate recognition by microneme protein 1 (MIC1) of Toxoplasma gondii.
in Protein science : a publication of the Protein Society
A Celik
(2007)
Direct Biocatalytic Conversion of Carbon Dioxide: Towards a Formic Acid Economy
in in preparation
Boutureira O
(2011)
Direct radiolabelling of proteins at cysteine using [18F]-fluorosugars.
in Chemical communications (Cambridge, England)
Chang Y-P
(2014)
DISCOVERY OF A SELECTIVE LYSOSOMAL ALPHA-MANNOSIDASE INHIBITOR FROM AN IMINO-SUGAR LIBRARY
in JOURNAL OF PEPTIDE SCIENCE
Description | We developed a detailed understanding of the mechanisms of glycosyltransferases based on a chemical approach. These enzymes are widespread in biology but their mechanism for bond-formation has been poorly understood. By building and using suitable chemical probes, we were able to provide the first experimental evidence for a wholly unexpected mechanism that is rare in traditional chemistry (the SNi). In contrast to the chemistry found in the test tube, nature seems very capable of using this unusual reaction. This has had implications for how we think about these important enzymes and how we can design drugs that block them to treat certain diseases. |
Exploitation Route | Understanding how these enzymes work informs the corresponding biology and also allows the design of drugs for a class of enzymes that has been one of the most difficult to target to date. |
Sectors | Agriculture, Food and Drink,Chemicals,Education,Environment,Healthcare,Pharmaceuticals and Medical Biotechnology |
URL | http://users.ox.ac.uk/~dplb0149/index.html |
Description | BGD and group members have appeared on the radio, television, (BBD, Channel 5), science festivals around the world (Cheltenham, Kent, Edinburgh, Times Lit., Sydney) describing this work. We have given talks in schools to inspire the next generation. The work contributed strongly to the expansion of biocatalysts available for use in synthesis and license options on technology agreed with biotech e.g. Prozomix. |
First Year Of Impact | 2008 |
Sector | Chemicals,Healthcare,Pharmaceuticals and Medical Biotechnology |
Impact Types | Societal,Economic |
Company Name | Glycoform Ltd |
Description | drug delivery and glycoprotein specialist; biopharmaceuticals |
Impact | Employed >20 people over 10 years and provided a model for how synthetic protein drugs might be constructed and used. The technology for this company has now been used by major US companies. |
Website | http://isis-innovation.com/news/glycoform-ltd-improve-drug-delivery/ |