Tomo-SAXS: Imaging full-field molecular-to-macroscale biophysics of fibrous tissues

Lead Research Organisation: Queen Mary University of London
Department Name: School of Engineering & Materials Scienc

Abstract

Biological tissues - e.g. joints, arteries, ligaments - operate in a dynamic mechanical environment. Examples include the frictionless sliding of joints and the periodic stress waves in blood vessels. The body's response to these forces is mediated by a hierarchy of biophysical processes from the smallest (molecular) to the largest (organ) level. These processes - e.g. sliding of collagen fibrils at the nanoscale or shearing of fibre-bundles at the microscale - are very challenging experimentally to measure in situ. This is important because biophysics of the extracellular matrix at these small length-scales crucially affects cell and tissue growth and mediates progression of multiple noncommunicable disorders (e.g. osteoarthritis and abnormal wound healing). However, the state of the art in analysing such processes largely relies on imaging without direct mechanical quantification at the sub-micron scales or measuring mechanics of individual molecules ex situ.
In this regard, X-ray illumination of an organ can build up a 3D map of the collagen fibre bundles in the matrix (tomography or CT) with micron-level resolution (size of a human hair). At a hundred times smaller size, these same X-rays can interact with the molecules making up the fibres via interference, building up a picture like a diffraction grating (small angle scattering or SAXS). When a brilliant X-ray beam (like the kind available at synchrotrons) is available, these methods can be used to study load-induced biophysical changes dynamically. If the information from these two techniques - CT and SAXS - could be combined, we would have an unprecedented molecular-to-macroscale visualisation of tissue biophysics.
Here, we bring together expertise in X-ray imaging and synchrotron techniques to develop a path-breaking new technique - TomoSAXS - which will image the multiscale biophysics of tissues, integrating phase-contrast CT with SAXS into a single platform. By using the information from each method as input into the other in a synergistic manner, we will develop advanced reconstruction algorithms to generate full-field 3D images of molecular to macroscale soft tissue structure. These advances in analysis will be coupled with hardware development of a unique mechanical rig which can be used for simultaneous CT- and SAXS imaging on the same tissue or organ.
Because the SAXS signal from fibrous tissues is a highly complex 3D anisotropic pattern, we will develop the technique on simpler model systems before progressing to real tissues and organs. Starting with reconstituted collagen biomaterials, we will advance to organs like the intervertebral disc, which is crucially important for posture and preventing back pain. The intervertebral disc is a highly ordered collagenous tissue, with strong signal contrast in CT- and SAXS, and is well-suited to establish the method on.
After establishment of the technique, we will demonstrate its application and utility by i) carrying out training workshops for bioengineers and biomedical scientists on using the technique effectively and ii) engaging with the modelling community to incorporate the new insights from TomoSAXS in the next generation of predictive models.
The load- or stimuli-induced changes in micro- and nanostructure visualised in 3D volume maps of tissue will enable a step-change in realism, prediction and analysis of tissue health and disease. Examples include detection of localised supramolecular changes in the tissue matrix at early stages in disease and degeneration, defining structural biomarkers in conditions like osteoarthritis, and testing the effectiveness of drugs in repairing or regenerating tissue in situ. By establishing the method at the UK's national synchrotron, we will make this unique technique available to the UK bioengineering and biomedical community as well as internationally.
 
Description HiP-CT Imaging Hub
Amount $1,750,000 (USD)
Funding ID CZIF2021-006424 
Organisation Chan Zuckerberg Initiative 
Sector Private
Country United States
Start 11/2021 
End 10/2024
 
Description European Society of Biomechanics 2022 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A research poster "CONCURRENT IMAGING AND DIFFRACTION OF TRABECULAR BONE CONSTRUCTS WITH IN-SITU SCANNING AND COMPRESSION", by Elis Newham, Andrew James, Hans Deyhle, Sharif Ahmed, Gianluca Tozzi, and Himadri Shikhar Gupta, was presented at the European Society of Biomechanics 2022, and elicited much questions and discussion by participants on the novel combination of diffraction and tomography in imaging of biological tissues.
Year(s) Of Engagement Activity 2022
 
Description Invited seminar at Insigneo Institute, University of Sheffield 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact Dr. Himadri S. Gupta presented the current research in multiscale X-ray nanomechanical imaging, including developments in TomoSAXS, as part of the seminar "Shining light on the ultrastructural biophysics of connective tissue matrices using synchrotron X-ray nanomechanical imaging", at the Insigneo Institute at the University of Sheffield. Plans for future collaborations were developed as an outcome of discussions during and after the seminar.
Year(s) Of Engagement Activity 2022
 
Description Presentation at the 5-year review working group Soft Condensed Matter, Diamond Light Source 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A report was made by Dr. Himadri S. Gupta "Illuminating the ultrastructural biophysics of connective tissue matrices using synchrotron X-ray nanomechanical imaging" to the Soft Condensed Matter working group, on the usage of the Diamond SAXS beamline I22 by his group, as part of the 5-year review at Diamond Light Source . The working group commended the technological developments at I22 and its exploitation to development of new techniques (including the TomoSAXS methodology). The talk positively influenced the report by the working group, which recommended further investment and upgrades at the I22 beamline to keep up the development trajectory.
Year(s) Of Engagement Activity 2022
 
Description SAXS tensor tomography workshop at Diamond Light Source, 2023 
Form Of Engagement Activity A talk or presentation
Part Of Official Scheme? No
Geographic Reach International
Primary Audience Professional Practitioners
Results and Impact A presentation was given by Dr. Himadri Gupta "TomoSAXS: 3D combined SAXS and X-ray tomography of model collagenous tissues: initial results and current directions" on the progress of the EPSRC TomoSAXS project, showing initial results and analysis. Participants discussed the methodology and its relation to existing state of the art methods like SAXS tensor tomography.
Year(s) Of Engagement Activity 2022
 
Description Workshop at BioMedEngg 2022 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach National
Primary Audience Professional Practitioners
Results and Impact A workshop "Leveraging Next-Gen Multiscale Imaging at Central Facilities for Biomedical Engineering Research" was organised at the BioMedEngg 2022 conference (the main UK biomedical engineering conference). Invited speakers included specialists in imaging areas like X-ray diffraction tomography, 3D modelling combined with imaging, and hierarchical phase-contrast tomography. Participants voted on the most significant challenges in developing new imaging techniques for biomedical engineering, and the top-voted challenges were communicated to participants.
Year(s) Of Engagement Activity 2022