Tomo-SAXS: Imaging full-field molecular-to-macroscale biophysics of fibrous tissues
Lead Research Organisation:
Queen Mary University of London
Department Name: School of Engineering & Materials Scienc
Abstract
Biological tissues - e.g. joints, arteries, ligaments - operate in a dynamic mechanical environment. Examples include the frictionless sliding of joints and the periodic stress waves in blood vessels. The body's response to these forces is mediated by a hierarchy of biophysical processes from the smallest (molecular) to the largest (organ) level. These processes - e.g. sliding of collagen fibrils at the nanoscale or shearing of fibre-bundles at the microscale - are very challenging experimentally to measure in situ. This is important because biophysics of the extracellular matrix at these small length-scales crucially affects cell and tissue growth and mediates progression of multiple noncommunicable disorders (e.g. osteoarthritis and abnormal wound healing). However, the state of the art in analysing such processes largely relies on imaging without direct mechanical quantification at the sub-micron scales or measuring mechanics of individual molecules ex situ.
In this regard, X-ray illumination of an organ can build up a 3D map of the collagen fibre bundles in the matrix (tomography or CT) with micron-level resolution (size of a human hair). At a hundred times smaller size, these same X-rays can interact with the molecules making up the fibres via interference, building up a picture like a diffraction grating (small angle scattering or SAXS). When a brilliant X-ray beam (like the kind available at synchrotrons) is available, these methods can be used to study load-induced biophysical changes dynamically. If the information from these two techniques - CT and SAXS - could be combined, we would have an unprecedented molecular-to-macroscale visualisation of tissue biophysics.
Here, we bring together expertise in X-ray imaging and synchrotron techniques to develop a path-breaking new technique - TomoSAXS - which will image the multiscale biophysics of tissues, integrating phase-contrast CT with SAXS into a single platform. By using the information from each method as input into the other in a synergistic manner, we will develop advanced reconstruction algorithms to generate full-field 3D images of molecular to macroscale soft tissue structure. These advances in analysis will be coupled with hardware development of a unique mechanical rig which can be used for simultaneous CT- and SAXS imaging on the same tissue or organ.
Because the SAXS signal from fibrous tissues is a highly complex 3D anisotropic pattern, we will develop the technique on simpler model systems before progressing to real tissues and organs. Starting with reconstituted collagen biomaterials, we will advance to organs like the intervertebral disc, which is crucially important for posture and preventing back pain. The intervertebral disc is a highly ordered collagenous tissue, with strong signal contrast in CT- and SAXS, and is well-suited to establish the method on.
After establishment of the technique, we will demonstrate its application and utility by i) carrying out training workshops for bioengineers and biomedical scientists on using the technique effectively and ii) engaging with the modelling community to incorporate the new insights from TomoSAXS in the next generation of predictive models.
The load- or stimuli-induced changes in micro- and nanostructure visualised in 3D volume maps of tissue will enable a step-change in realism, prediction and analysis of tissue health and disease. Examples include detection of localised supramolecular changes in the tissue matrix at early stages in disease and degeneration, defining structural biomarkers in conditions like osteoarthritis, and testing the effectiveness of drugs in repairing or regenerating tissue in situ. By establishing the method at the UK's national synchrotron, we will make this unique technique available to the UK bioengineering and biomedical community as well as internationally.
In this regard, X-ray illumination of an organ can build up a 3D map of the collagen fibre bundles in the matrix (tomography or CT) with micron-level resolution (size of a human hair). At a hundred times smaller size, these same X-rays can interact with the molecules making up the fibres via interference, building up a picture like a diffraction grating (small angle scattering or SAXS). When a brilliant X-ray beam (like the kind available at synchrotrons) is available, these methods can be used to study load-induced biophysical changes dynamically. If the information from these two techniques - CT and SAXS - could be combined, we would have an unprecedented molecular-to-macroscale visualisation of tissue biophysics.
Here, we bring together expertise in X-ray imaging and synchrotron techniques to develop a path-breaking new technique - TomoSAXS - which will image the multiscale biophysics of tissues, integrating phase-contrast CT with SAXS into a single platform. By using the information from each method as input into the other in a synergistic manner, we will develop advanced reconstruction algorithms to generate full-field 3D images of molecular to macroscale soft tissue structure. These advances in analysis will be coupled with hardware development of a unique mechanical rig which can be used for simultaneous CT- and SAXS imaging on the same tissue or organ.
Because the SAXS signal from fibrous tissues is a highly complex 3D anisotropic pattern, we will develop the technique on simpler model systems before progressing to real tissues and organs. Starting with reconstituted collagen biomaterials, we will advance to organs like the intervertebral disc, which is crucially important for posture and preventing back pain. The intervertebral disc is a highly ordered collagenous tissue, with strong signal contrast in CT- and SAXS, and is well-suited to establish the method on.
After establishment of the technique, we will demonstrate its application and utility by i) carrying out training workshops for bioengineers and biomedical scientists on using the technique effectively and ii) engaging with the modelling community to incorporate the new insights from TomoSAXS in the next generation of predictive models.
The load- or stimuli-induced changes in micro- and nanostructure visualised in 3D volume maps of tissue will enable a step-change in realism, prediction and analysis of tissue health and disease. Examples include detection of localised supramolecular changes in the tissue matrix at early stages in disease and degeneration, defining structural biomarkers in conditions like osteoarthritis, and testing the effectiveness of drugs in repairing or regenerating tissue in situ. By establishing the method at the UK's national synchrotron, we will make this unique technique available to the UK bioengineering and biomedical community as well as internationally.
People |
ORCID iD |
Himadri Shikhar Gupta (Principal Investigator) |
Publications
Badar W
(2022)
Collagen pre-strain discontinuity at the bone-Cartilage interface
in PLOS ONE
Barbieri E
(2022)
Chemoviscoelasticity of the interfibrillar matrix of the dermis of the black sea cucumber Holuthuria atria
in Mechanics of Materials
Chen Y
(2024)
Accelerating the remodeling of collagen in cutaneous full-thickness wound using FIR soldering technology with bio-targeting nanocomposites hydrogel.
in Journal of biophotonics
Disney C
(2023)
Image quality and scan time optimisation for in situ phase contrast x-ray tomography of the intervertebral disc
in Journal of the Mechanical Behavior of Biomedical Materials
Dong Z
(2022)
In situ determination of the extreme damage resistance behavior in stomatopod dactyl club.
in Journal of synchrotron radiation
Zhang Y
(2022)
Investigating the Fibrillar Ultrastructure and Mechanics in Keloid Scars Using In Situ Synchrotron X-ray Nanomechanical Imaging.
in Materials (Basel, Switzerland)
Description | HiP-CT Imaging Hub |
Amount | $1,750,000 (USD) |
Funding ID | CZIF2021-006424 |
Organisation | Chan Zuckerberg Initiative |
Sector | Private |
Country | United States |
Start | 11/2021 |
End | 10/2024 |
Description | HiP-CT Imaging Hub Expansion |
Amount | $5,000,000 (USD) |
Organisation | Chan Zuckerberg Initiative |
Sector | Private |
Country | United States |
Start | 12/2022 |
End | 11/2027 |
Description | A Parmenter chairing at ATEM |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | A Parmenter chairing at ATEM. Session: Large-scale DIC testing, Japan |
Year(s) Of Engagement Activity | 2023 |
Description | A Parmenter poster at ATEM |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | A Parmenter poster at ATEM "Combining synchrotron X-ray tomography and diffraction to investigate structure and strain across the intervertebral disc-endplate soft-hard tissue boundary", Japan |
Year(s) Of Engagement Activity | 2023 |
Description | A Parmenter poster at RaCH The 6th Annual Workshop on Advances in X-ray Imaging: Expanding the Frontiers of Knowledge |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | A Parmenter poster at RaCH The 6th Annual Workshop on Advances in X-ray Imaging: Expanding the Frontiers of Knowledge, "Biomechanics of the intervertebral disc-endplate junction analysed using synchrotron CT and DVC", UK |
Year(s) Of Engagement Activity | 2023 |
Description | A Parmenter talk at ATEM |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | A Parmenter talk at ATEM "Digital volume correlation of the intervertebral disc: a multiple tissue type analysis", Japan |
Year(s) Of Engagement Activity | 2023 |
Description | A Parmenter talk at Biomedeng23 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | A Parmenter talk at Biomedeng23 "Biomechanics of the intervertebral disc-endplate soft-hard tissue junction analysed using synchrotron tomography and digital volume correlation ", UK |
Year(s) Of Engagement Activity | 2023 |
Description | A Parmenter talk at UCL Engineering students Research Festival |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Postgraduate students |
Results and Impact | A Parmenter talk at UCL Engineering students Research Festival, "Using X-Rays to Investigate the Mechanics of the Spine", UK |
Year(s) Of Engagement Activity | 2023 |
Description | A Parmenter talk at the Congress of the European Society of Biomechanics |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | A Parmenter talk at the Congress of the European Society of Biomechanics, "Structure and mechanics of the intervertebral disc-endplate junction analysed using synchrotron CT and DVC", The Netherlands |
Year(s) Of Engagement Activity | 2023 |
Description | A Parmenter, poster talk at MechEng PhD Conference |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | A Parmenter, poster talk at MechEng PhD Conference, "Quantifying strains across the intervertebral disc-endplate junction using synchrotron CT and DVC", UK |
Year(s) Of Engagement Activity | 2023 |
Description | A Parmenter, talk at BioMedEng22 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | A Parmenter, talk at BioMedEng22, "Biomechanics of the vertebral endplate analysed using in situ phase-contrast synchrotron tomography and digital volume correlation", London, UK |
Year(s) Of Engagement Activity | 2022 |
Description | A talk or presentation - Talk, H S. Gupta, Aarhus University 2023 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Invited talk at Aarhus University at the Interdisciplinary Nanoscience Center, "Measuring ultrastructural biophysics of extracellular tissue matrices using high-brilliance synchrotron X-ray nanomechanical imaging" |
Year(s) Of Engagement Activity | 2023 |
Description | C Disney, 2022 CoSeC Impact Award |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | C Disney was awarded the 2022 CoSeC Impact Award, 'Catherine's work is central to CCPi. The new methodology (Digital Volume Correlation) looks very promising although it is not clear whether this has yet had an impact in real world medical diagnosis.' . |
Year(s) Of Engagement Activity | 2022 |
Description | C Disney, Invited talk at iDICs conference. |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | C Disney, Invited talk at iDICs conference, "Fibre Tracking in Soft Tissue using Synchrotron Tomography and Digital Volume Correlation", Nantes, France. |
Year(s) Of Engagement Activity | 2021 |
Description | C Disney, poster at BioMedEng 22. |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | C Disney, poster at BioMedEng 22, Regional Collagen Fibre Kinematics of the Intervertebral Disc, London, UK |
Year(s) Of Engagement Activity | 2022 |
Description | E Newham talk at Biomedeng23 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | E Newham talk at Biomedeng 2023 "TOMOSAXS: MULTIMODAL VOLUMETRIC ANALYSIS OF COLLAGEN NANO-TO-MICROSTRUCTURE ", UK |
Year(s) Of Engagement Activity | 2023 |
Description | European Society of Biomechanics 2022 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | A research poster "CONCURRENT IMAGING AND DIFFRACTION OF TRABECULAR BONE CONSTRUCTS WITH IN-SITU SCANNING AND COMPRESSION", by Elis Newham, Andrew James, Hans Deyhle, Sharif Ahmed, Gianluca Tozzi, and Himadri Shikhar Gupta, was presented at the European Society of Biomechanics 2022, and elicited much questions and discussion by participants on the novel combination of diffraction and tomography in imaging of biological tissues. |
Year(s) Of Engagement Activity | 2022 |
Description | H Gupta, BioMedEng22 Programme Committee. |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | H Gupta was invited to join the BioMedEng22 Programme Committee. |
Year(s) Of Engagement Activity | 2022 |
Description | Invited seminar at Insigneo Institute, University of Sheffield |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | Dr. Himadri S. Gupta presented the current research in multiscale X-ray nanomechanical imaging, including developments in TomoSAXS, as part of the seminar "Shining light on the ultrastructural biophysics of connective tissue matrices using synchrotron X-ray nanomechanical imaging", at the Insigneo Institute at the University of Sheffield. Plans for future collaborations were developed as an outcome of discussions during and after the seminar. |
Year(s) Of Engagement Activity | 2022 |
Description | PD Lee talk at Hard X-ray Imaging of Biological Soft Tissues |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Industry/Business |
Results and Impact | PD Lee talk at Hard X-ray Imaging of Biological Soft Tissues, "Imaging Intact Human Organs with Near-cellular Resolution using Hierarchical Phase-Contrast Tomography", The Francis Crick Institute, UK |
Year(s) Of Engagement Activity | 2023 |
Description | PD Lee talk at TomoSAXS Workshop |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | PD Lee talk at TomoSAXS Workshop "SAXS imaging and tomography science and experimental methods", Harwell |
Year(s) Of Engagement Activity | 2022 |
Description | PD Lee, Invited Talk at 24 Hour Human Reference Atlas Event |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | PD Lee, Invited Talk at 24 Hour Human Reference Atlas Event, "Mapping Whole Human Organs at High Resolution" |
Year(s) Of Engagement Activity | 2022 |
Description | Participation in an open day or visit at my research institution - Open Days/Public Visits |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | No |
Geographic Reach | Regional |
Primary Audience | Public/other audiences |
Results and Impact | At Diamond's open days, visitors are able to engage with scientists and engineers as part of a visit to the facility. They encounter researchers discussing their work, and are able to see the potential future impact of the research activity, for example, the potential applications of solar technology. The beamline takes part in open days for the public and for schools. Events provoke discussion with visitors, and raise awareness of current research For the beamline. Families often bring children to the facility, who are exposed to a range of science and engineering careers outside of the usual lab environment. |
Year(s) Of Engagement Activity | 2022 |
URL | http://www.diamond.ac.uk/Home/Events/Inside-Diamond---Public-Open-Days.html |
Description | Poster, A Parmenter, ICTMS 2022 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Poster, A Parmenter, ICTMS 2022, Imaging and Quantification of the Vertebral Disc-Endplate System |
Year(s) Of Engagement Activity | 2022 |
Description | Poster: European Society of Biomechanics Congress 2023 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Poster presentation at the European Society of Biomechanics 2023 "The Fibrillar Mechanics and Structure of Fibrotic Tissue Illuminated with In Situ Synchrotron X-ray Nanomechanical Imaging" |
Year(s) Of Engagement Activity | 2023 |
Description | Presentation at the 5-year review working group Soft Condensed Matter, Diamond Light Source |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | A report was made by Dr. Himadri S. Gupta "Illuminating the ultrastructural biophysics of connective tissue matrices using synchrotron X-ray nanomechanical imaging" to the Soft Condensed Matter working group, on the usage of the Diamond SAXS beamline I22 by his group, as part of the 5-year review at Diamond Light Source . The working group commended the technological developments at I22 and its exploitation to development of new techniques (including the TomoSAXS methodology). The talk positively influenced the report by the working group, which recommended further investment and upgrades at the I22 beamline to keep up the development trajectory. |
Year(s) Of Engagement Activity | 2022 |
Description | SAXS tensor tomography workshop at Diamond Light Source, 2023 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | A presentation was given by Dr. Himadri Gupta "TomoSAXS: 3D combined SAXS and X-ray tomography of model collagenous tissues: initial results and current directions" on the progress of the EPSRC TomoSAXS project, showing initial results and analysis. Participants discussed the methodology and its relation to existing state of the art methods like SAXS tensor tomography. |
Year(s) Of Engagement Activity | 2022 |
Description | Talk by Elis Newham at European Society of Biomechanics Congress 2023 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Talk by Dr. Elis Newham at the European Society of Biomechanics Congress 2023 "TomoSAXS: multimodal Mechanics from the molecular to the macro-scale" |
Year(s) Of Engagement Activity | 2023 |
Description | Talk, C Disney, ICTMS 2022 |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Industry/Business |
Results and Impact | Talk, C Disney, ICTMS 2022, REGIONAL VARIATION OF FIBRE KINEMATICS IN THE INTERVERTEBRAL DISC |
Year(s) Of Engagement Activity | 2022 |
Description | Workshop at BioMedEngg 2022 |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Professional Practitioners |
Results and Impact | A workshop "Leveraging Next-Gen Multiscale Imaging at Central Facilities for Biomedical Engineering Research" was organised at the BioMedEngg 2022 conference (the main UK biomedical engineering conference). Invited speakers included specialists in imaging areas like X-ray diffraction tomography, 3D modelling combined with imaging, and hierarchical phase-contrast tomography. Participants voted on the most significant challenges in developing new imaging techniques for biomedical engineering, and the top-voted challenges were communicated to participants. |
Year(s) Of Engagement Activity | 2022 |