Core Capability - University of York
Lead Research Organisation:
University of York
Department Name: Chemistry
Abstract
The Chemistry Department in York is one of University's largest research-led departments, with approximately 50 academic staff, 57-research fellows, 136 PhD (30 funded by EPSRC, 12 by NERC), and 14 MSc/MRes research students. Our chemical analyses are critical for the publication of research articles and these are made at a number of leading research centres for example, the York Centre of Excellence in Mass Spectrometry (CoEMS), York Centre for Magnetic Resonance (YCMR), York JEOL Nanocentre, and the Centre for Hyperpolarisation in Magnetic Resonance (CHyM). This bid is made for new/replacement equipment to support our leading research in the following activities:
NMR Spectroscopy: We seek funding for a 400 MHz solid state NMR system as a vital extension to our research activities, given the huge importance of solid/soft matter in numerous research and technological areas such as heterogeneous catalysis, green chemistry, materials and nano-science. In addition, we will contribute to solid state NMR methodology research, which will allow our hyperpolarization research to include NMR studies of surface species/catalysis, and also to the expansion of unconventional computational research (based on spin dynamics) that will be extended to much more complicated, time-dependent phenomena than is currently possible.
Mass Spectrometry: In collaboration with Bruker Daltonics, the Centre of Excellence in Mass Spectrometry (CoEMS) in York was supplied with a unique combination and breadth of instrumentation, the centre piece of which is our FT-ICR instrument, which was upgraded to the new solariX. FT-ICR is the method that provides the highest resolution and accuracy measurements in mass spectrometry. The specification of our current instrument (9.4T solariX) has a resolution of 1.5 x 10 sixth at m/z 400. With its MALDI and ESI sources, it is also capable of imaging MS. We now seek to upgrade the solariX to the even higher resolving power and accuracy required to capture the full range of information for increasingly complex natural mixtures like fossil- and bio-fuels and many other current analytical challenges such as the molecular-level characterization of atmospheric aerosols and probing intact proteins and protein assemblies.
Small Angle X-Ray Diffraction: "Soft-matter" comprises a family of differing materials from membrane lipids, detergents, polymers, and nanoparticles to liquid crystals; ie, systems integral to every-day-life. The properties and applications of such systems require detailed understanding of structure and local molecular organisation. Previously, structures were inferred from polarized light microscopy, however, as the complexities of the phases of functional materials increase modern X-ray diffraction has become the standard for structural characterisation. This request is directed at extending our cutting edge research on self-assembling systems, via the acquisition of a diffractometer with custom-made sample holders, to study phase structures in the bulk, in thin films, and in devices.
Fluorescence X-ray Spectroscopy: In 2009, UoY prioritised the purchase of a micro-X-ray fluorescence (Horiba XGT-7000 Micro XRF). The instrument provides non-destructive elemental analysis, beyond CHN (ppm levels), directly from the sample (solid or liquid) without digestion using hazardous strong acids (ie, mandatory for flame atomic absorption). The equipment is currently unusable and needs parts replacing and repair.
NMR Spectroscopy: We seek funding for a 400 MHz solid state NMR system as a vital extension to our research activities, given the huge importance of solid/soft matter in numerous research and technological areas such as heterogeneous catalysis, green chemistry, materials and nano-science. In addition, we will contribute to solid state NMR methodology research, which will allow our hyperpolarization research to include NMR studies of surface species/catalysis, and also to the expansion of unconventional computational research (based on spin dynamics) that will be extended to much more complicated, time-dependent phenomena than is currently possible.
Mass Spectrometry: In collaboration with Bruker Daltonics, the Centre of Excellence in Mass Spectrometry (CoEMS) in York was supplied with a unique combination and breadth of instrumentation, the centre piece of which is our FT-ICR instrument, which was upgraded to the new solariX. FT-ICR is the method that provides the highest resolution and accuracy measurements in mass spectrometry. The specification of our current instrument (9.4T solariX) has a resolution of 1.5 x 10 sixth at m/z 400. With its MALDI and ESI sources, it is also capable of imaging MS. We now seek to upgrade the solariX to the even higher resolving power and accuracy required to capture the full range of information for increasingly complex natural mixtures like fossil- and bio-fuels and many other current analytical challenges such as the molecular-level characterization of atmospheric aerosols and probing intact proteins and protein assemblies.
Small Angle X-Ray Diffraction: "Soft-matter" comprises a family of differing materials from membrane lipids, detergents, polymers, and nanoparticles to liquid crystals; ie, systems integral to every-day-life. The properties and applications of such systems require detailed understanding of structure and local molecular organisation. Previously, structures were inferred from polarized light microscopy, however, as the complexities of the phases of functional materials increase modern X-ray diffraction has become the standard for structural characterisation. This request is directed at extending our cutting edge research on self-assembling systems, via the acquisition of a diffractometer with custom-made sample holders, to study phase structures in the bulk, in thin films, and in devices.
Fluorescence X-ray Spectroscopy: In 2009, UoY prioritised the purchase of a micro-X-ray fluorescence (Horiba XGT-7000 Micro XRF). The instrument provides non-destructive elemental analysis, beyond CHN (ppm levels), directly from the sample (solid or liquid) without digestion using hazardous strong acids (ie, mandatory for flame atomic absorption). The equipment is currently unusable and needs parts replacing and repair.
Planned Impact
The University of York's proposal is based on a collective approach by the N8 universities to the EPSRC Core Capability Call. This approach is in response to the Wakeham Review of efficiencies in research funding, a report was commissioned in 2011 to explore the benefits of wider collaboration across the universities represented by the group (Prof L. Georghiou, Sharing for Excellence and Growth, 2011, http://www.n8research.org.uk/research_areas/). This report identified a strong need of the N8 group to collaborate and co-ordinate on equipment and capital costs, where this is viable. The coordinated bid from the N8 Universities is in full alignment with this recommendation.
An asset-sharing programme has been developed to create an integrated database of assets that are available for the use of researchers throughout the N8. These systems describe the research equipment in detail, including its availability, procedures for access (eg health and safety and training) and how access would be charged to another institution. Through the implementation and utilisation of this system, equipment and instrumentation funded through this application will be leveraged for a greater impact across both the individual department and the N8 organisation than if it was provided to a single institution. Furthermore, as a result the N8 Collective will be able to continue to train chemists to a standard in order to enable them to compete on national and international levels on the most relevant equipment.
An asset-sharing programme has been developed to create an integrated database of assets that are available for the use of researchers throughout the N8. These systems describe the research equipment in detail, including its availability, procedures for access (eg health and safety and training) and how access would be charged to another institution. Through the implementation and utilisation of this system, equipment and instrumentation funded through this application will be leveraged for a greater impact across both the individual department and the N8 organisation than if it was provided to a single institution. Furthermore, as a result the N8 Collective will be able to continue to train chemists to a standard in order to enable them to compete on national and international levels on the most relevant equipment.
Organisations
Publications
Evans M
(2023)
Detection of dairy products from multiple taxa in Late Neolithic pottery from Poland: an integrated biomolecular approach
in Royal Society Open Science
Drieu L
(2020)
Is it possible to identify ancient wine production using biomolecular approaches?
in STAR: Science & Technology of Archaeological Research
Ding R
(2022)
Experimental and numerical study on motion instability of modular floating structures
in Nonlinear Dynamics
Digomann D
(2019)
The CD98 Heavy Chain Is a Marker and Regulator of Head and Neck Squamous Cell Carcinoma Radiosensitivity.
in Clinical cancer research : an official journal of the American Association for Cancer Research
Digomann D
(2019)
The CD98 Heavy Chain Is a Marker and Regulator of Head and Neck Squamous Cell Carcinoma Radiosensitivity.
in Clinical cancer research : an official journal of the American Association for Cancer Research
Dierickx K
(2023)
Rapid collagen peptide mass fingerprinting as a tool to authenticate Pleuronectiformes in the food industry
in Food Control
Dierickx K
(2022)
Peptide mass fingerprinting of preserved collagen in archaeological fish bones for the identification of flatfish in European waters
in Royal Society Open Science
Dekker J
(2023)
Spatial analysis of the ancient proteome of archeological teeth using mass spectrometry imaging.
in Rapid communications in mass spectrometry : RCM
De Pablos LM
(2019)
The mRNA-bound Proteome of Leishmania mexicana: Novel Genetic Insight into an Ancient Parasite.
in Molecular & cellular proteomics : MCP
Cracknell T
(2020)
Proteomic resolution of IGFN1 complexes reveals a functional interaction with the actin nucleating protein COBL.
in Experimental cell research
Chidwick HS
(2021)
Reconstitution and optimisation of the biosynthesis of bacterial sugar pseudaminic acid (Pse5Ac7Ac) enables preparative enzymatic synthesis of CMP-Pse5Ac7Ac.
in Scientific reports
Catania TM
(2018)
Silencing amorpha-4,11-diene synthase Genes in Artemisia annua Leads to FPP Accumulation.
in Frontiers in plant science
Cabry C
(2022)
Small-angle neutron scattering from mixtures of long- and short-chain 3-alkyl-1-methyl imidazolium bistriflimides
in Physical Chemistry Chemical Physics
Bárdy P
(2023)
Jorvik: A membrane-containing phage that will likely found a new family within Vinavirales
in iScience
Burns EE
(2018)
Temporal and spatial variation in pharmaceutical concentrations in an urban river system.
in Water research
Brabham RL
(2020)
Rapid sodium periodate cleavage of an unnatural amino acid enables unmasking of a highly reactive a-oxo aldehyde for protein bioconjugation.
in Organic & biomolecular chemistry
Brabham R
(2020)
Correction: Rapid sodium periodate cleavage of an unnatural amino acid enables unmasking of a highly reactive a-oxo aldehyde for protein bioconjugation
in Organic & Biomolecular Chemistry
Bottery MJ
(2022)
Inter-species interactions alter antibiotic efficacy in bacterial communities.
in The ISME journal
Bexley J
(2019)
Serum IgE cross-reactivity between fish and chicken meats in dogs.
in Veterinary dermatology
Besser K
(2018)
Hemocyanin facilitates lignocellulose digestion by wood-boring marine crustaceans.
in Nature communications
Becerra-Rivera VA
(2018)
Polyamines are required for normal growth in Sinorhizobium meliloti.
in Microbiology (Reading, England)
Barros-Galvão T
(2020)
ABA INSENSITIVE4 promotes rather than represses PHYA-dependent seed germination in Arabidopsis thaliana.
in The New phytologist
Barros-Galva~o T
(2019)
cis-12-Oxo-phytodienoic acid represses Arabidopsis seed germination in shade conditions
in Journal of Experimental Botany
Barber L
(2023)
Selectivity and stability of N-terminal targeting protein modification chemistries
in RSC Chemical Biology
Archbold CT
(2015)
Chiral dopants and the twist-bend nematic phase--induction of novel mesomorphic behaviour in an apolar bimesogen.
in Soft matter
Archbold C
(2017)
Conformational landscapes of bimesogenic compounds and their implications for the formation of modulated nematic phases
in Liquid Crystals
Al-Khazrajy O
(2017)
Determination of pharmaceuticals in freshwater sediments using ultrasonic-assisted extraction with SPE clean-up and HPLC-DAD or LC-ESI-MS/MS detection
in Analytical Methods
Al-Janabi A
(2017)
Isomeric trimesogens exhibiting modulated nematic mesophases
in RSC Adv.
Description | This grant was to upgrade the equipment base in the department. This has been achieved. |
Exploitation Route | The new equipment is in constant use and underpins many current scientific investigations |
Sectors | Agriculture, Food and Drink,Chemicals,Healthcare,Pharmaceuticals and Medical Biotechnology |
Description | This award was to upgrade key departmental equipment. |
First Year Of Impact | 2013 |
Sector | Agriculture, Food and Drink,Chemicals,Healthcare,Pharmaceuticals and Medical Biotechnology |
Impact Types | Economic |