Advanced Crystal Shape Descriptors for Precision Particulate Design, Characterisation and Processing (Shape4PPD)

Lead Research Organisation: University of Leeds
Department Name: Chemical and Process Engineering

Abstract

Developing and improving our R&D and manufacturing capabilities to prepare greater numbers of higher quality crystalline materials has become a growing societal and hence industrial need. This requires higher levels of precision and speed throughout the R&D development cycle to meet the evolving needs for precision crystals in fine chemical's sector such as for pharmaceuticals, agrochemicals and additives. For example, a more differentiated product range is expected to be produced with a significantly faster molecule to patient journey, in much smaller volumes and at significantly lower costs. For pharmaceuticals, this will provide a wider range of more targeted medicines and dosage forms, ensuring the delivery of patient-targeted dosage forms with much improved safety and efficacy, hence enormously benefiting economy, environment and society. Such an increase in the multiplicity of crystalline products demands the implementation of digitally-enabled and AI technologies as highlighted in UK government policy and global initiatives.

The surface properties of crystals are very important for the digital design and manufacture of precision particles via solution crystallisation. Control of the surfaces expressed on crystalline particles represents a critical objective for the fine chemical industry which manufactures ca. 70% of their ingredients in solid (crystalline) form. These crystals have their unique shapes and surface chemistry which, when variable, can impact adversely upon product quality and performance. Specifically, the effective digital design of such products and the associated processes for their manufacture demands a detailed knowledge of surface properties of the product's formulation ingredients. Currently there exists a critical gap to relate the measurable properties at the molecular and single crystal levels to the behaviour and performance of the same material when it is manufactured or used in particulate form. This perspective demands the development of a digitally-enabled platform which is able to characterise, monitor and control crystal size and shape. However, existing crystal shape descriptors available with current commercial particle measurement systems have limited capabilities and the corresponding algorithms tend, unrealistically, to be based upon the assumption that non-spherical crystals can be treated as spherical ones. Therefore, the development of advanced process-inspired analytical tools, particularly of AI-based approach, combining with first-principle, shape-based models are clearly needed. Such approaches are important in order to ensure that the UK's research-led fine chemical and pharmaceutical industry continues to provide outstanding international leadership in product development and manufacture so maintaining and enhancing its global competitiveness.

The proposed research will apply machine learning based upon crystal morphology prediction (forward engineering) to map from 2D in-process microscopy data back to a description of a crystal's 3D shape (reverse engineering) and, through this, to its functional surface properties. This will enable the design and control of more efficient and agile manufacturing processes for crystalline fine chemicals, delivering precision crystals with a much tighter specification in terms of their size and shape than is currently feasible, hence resulting in products having more consistency, less variability, higher quality. The outcomes will be a digital platform of crystal shape characterisation and process dynamics control for precision particle manufacture. The approach developed will be shared through academic collaboration (such as the CMAC Hub, INFORM2020, Cambridge Crystallographic Data Centre, Imperial College etc.) and with industry (Infineum, Keyence, Pfizer, Roche, Syngenta etc.) and also extended in due course more widely, expecting potentially enormous economic and societal impact.

Publications

10 25 50
 
Description SHAPE4PPD is an interdisciplinarity project between the research strands of computer vision and chemical process engineering aimed at the measurement and control of the solid-form properties of crystals important in the pharmaceutical, specialities and fine chemical sectors. Progress so far has seen 3D crystal growth rates measured in-process for the first time using a bespoke semi-automatic AI early prototype crystal image analysis system. We are close to delivering a fully automated tool for producing 3D crystal measurements from experimental images (MIDC tool).
Key Findings:
1. CSSP dataset was created using molecular modelling VisualHabit software. A crystal image dataset was curated through in situ single crystal imaging with the Keyence microscope and in-process crystallisation imaging using the Perdix probe.
2. DCR tool has been developed generating realistic crystal images from digital crystals in three different ways; using open-source graphics packages Blender and Mitsuba and a generative neural network trained using synthetic crystal images from Blender. We have also implemented a generative adversarial network (CycleGAN) to turn synthetic crystal images into more realistic crystal images.
3. MIDC tool development applied two approaches. Firstly, a CNN was used to perform the mapping directly. A prototype has been trained on a large dataset of synthetic images generated using the DCR tool with the digital crystal ground truth. Secondly, digital crystal images have been fitted to generated images of synthetic crystals by two different approaches using inverse rendering or by detecting and matching projected and refracted crystal habit edges, in both cases using gradient descent optimisation.
4. Crystal surface properties of L-glutamic acid (LGA) have been predicted using VisualHabit for the 3D reconstruction tool development and has been applied to the analysis of projected 2D crystal images. An automatic face indexing tool for 3D crystal reconstruction for automatically associating surface properties with crystal habit faces is being developed.
5. 2D crystal images have been captured in situ using Keyence microscopy for mapping 2D projected crystal growth kinetics. An automated 2D crystal sizing tool for analysing in-situ facet growth rates of LGA crystals as a function of supersaturation using a generic segmentation tool based on machine learning and matching of the 2D crystal shape to the target segment. This provides high accuracy and consistency with much shorter processing times compared to previous methods. For the first time, the growth mechanism (BCF) of the prismatic faces was determined (DOI:10.1021/acs.cgd.3c01548).
6. Using transmission light mode imaging, full 3D facet growth rate of beta-form LGA crystals have been measured manually based on the shadow widths of the prismatic faces. The basal plane growth rate was measured for the first time. A paper has been submitted (29th Feb, 2024) to Journal of Applied Crystallography for publication.
7. A bespoke 300ml temperature-controlled crystalliser was designed and commissioned with a Perdix imaging probe for the analysis of crystal size and shape and agglomeration behaviour during the batch crystallisation of LGA.
Exploitation Route We are exploring a human-in-the-loop semi-automated solution through an associated DTC studentship, partially funded by industry. This is designed to provide a short-term practical tool for deployment both in academic and industrial collaborators. In the longer term, we aim to upgrade this tool to require minimal human intervention, a concept that will be tested through industrial case study work following on from the end of the project.
Sectors Agriculture

Food and Drink

Chemicals

Digital/Communication/Information Technologies (including Software)

Manufacturing

including Industrial Biotechology

Pharmaceuticals and Medical Biotechnology

 
Description Characterisation of Crystalline Materials through Imaging, Image Processing and Machine Learning for 3D Shape Description
Amount £85,250 (GBP)
Funding ID 2748332 
Organisation Engineering and Physical Sciences Research Council (EPSRC) 
Sector Public
Country United Kingdom
Start 08/2022 
End 03/2026
 
Description Faculty of Engineering and Physical Sciences, DTP international studentship top up - Characterisation of Crystalline Materials through Imaging, Image Processing and Machine Learning for 3D Shape Description
Amount £61,000 (GBP)
Organisation University of Leeds 
Sector Academic/University
Country United Kingdom
Start 08/2022 
End 03/2026
 
Description Syngenta studentship project contribution
Amount £25,500 (GBP)
Organisation Sengenia Ltd 
Sector Private
Country United Kingdom
Start 12/2021 
End 11/2025
 
Description Be Curious 2022, University of Leeds 
Form Of Engagement Activity Participation in an activity, workshop or similar
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact About 25 groups (~80 visitors) came to our stall "Watching Crystals Grow". Activities include hand-on experience of microscopic crystal growing images and also images of hands, hairs, fabric, coins etc. from visitors, which stimulated a lot of questions and discussions during the event. The feedbacks from visitors revealed that the event inspired their interests in science and technologies.
Year(s) Of Engagement Activity 2022