Role and regulation of cyclin F in the cellular responses to ionizing radiation (IR).
Lead Research Organisation:
University of Oxford
Department Name: UNLISTED
Abstract
Each cell in our body duplicates itself by copying its main information hub: the DNA. To ensure that the information contained in the DNA is not altered during the process of cell division, cells have evolved checkpoints that monitor the correct execution of DNA replication. Studies from the laboratory of Dr Vincenzo D’Angiolella have revealed how the balance of the building blocks composing the DNA molecule is maintained in the cell cycle and how this is coordinated with the execution of checkpoints. The laboratory discovered that the organized synthesis and removal of the enzymes responsible for the production of the building blocks is crucial to ensure the fidelity of DNA replication and cell survival.
A characteristic feature cancer cells is the loss of checkpoints. The lack of checkpoint control provides cancer cells with a proliferative advantage at the cost of increased susceptibility to agents damaging the DNA molecule. This is exploited in cancer therapy through the use of radiation therapy.
Future studies will focus on elucidating the function of genes that modulate the checkpoint responses of cancer cells to radiation therapy. These studies will reveal novel potential weakness to increase the efficacy of radiation therapy for cancer treatment.
A characteristic feature cancer cells is the loss of checkpoints. The lack of checkpoint control provides cancer cells with a proliferative advantage at the cost of increased susceptibility to agents damaging the DNA molecule. This is exploited in cancer therapy through the use of radiation therapy.
Future studies will focus on elucidating the function of genes that modulate the checkpoint responses of cancer cells to radiation therapy. These studies will reveal novel potential weakness to increase the efficacy of radiation therapy for cancer treatment.
Technical Summary
A feature of cells exposed to IR is the activation of a G2/M checkpoint, which controls cell cycle progression, allows damage repair or drives cell death. From work in my laboratory, cyclin F has emerged as a crucial regulator of multiple aspects of the G2 phase (D’Angiolella et al., Trends in Cell Biol, 2013). I found that cyclin F act as an E3 ubiquitin ligase and induces the ubiquitin-mediated proteolysis of the Ribonucleotide Reductase subunit (RRM2) (D’Angiolella et al., Cell, 2012), which controls production of dNTPs, the building blocks of DNA. After the induction of the G2/M checkpoint by IR, cyclin F is proteolyzed to allow production of dNTPs for DNA repair and to modulate multiple aspects of the IR response. How cyclin F activity and levels are regulated by the checkpoint, however, is not understood. We have identified discrete phosphorylation events on cyclin F, which change dynamically upon checkpoint induction and we have shown that cyclin F is phosphorylated directly by cyclin-dependent kinases, Wee1 and Chk1. Furthermore, we have identified the E3 ubiquitin ligase ßtrcp as an interacting partner and regulator of cyclin F. We will establish how cyclin F activity and levels are controlled during the checkpoint induced by IR and the impact on the production of dNTPs (Aim1). These studies will reveal how DNA replication and checkpoint responses induced by IR in S and G2 phases of the cell cycle are coordinated with dNTP production. Since altered cyclin F levels have been described in hepatocellular carcinoma and ovarian cancer, where cyclin F levels correlate with survival outcome (Carlucci, D’Angiolella, Br J Cancer, 2015), our studies may also predict patient responses to IR and checkpoint inhibitors in the presence of altered cyclin F levels.
In addition to RRM2, preliminary studies from my laboratory have identified Scaper as an additional substrate of Cyclin F. Scaper is a poorly characterized regulator of cell cycle progression that regulates cyclin A localization (Tsang et al., J Cell Biol, 2007). We have observed that Scaper has a crucial role in regulating cell survival after IR. We propose to further investigate the role of Scaper and its regulation by ubiquitin mediated proteolysis mediated by cyclin F and APC/C (Aim2). Interestingly, deletion and mutations of Scaper are frequent in cancer cell lines and tumors. Our studies may predict patient responses to IR and checkpoint inhibitors in cancers bearing Scaper mutations.
In addition to RRM2, preliminary studies from my laboratory have identified Scaper as an additional substrate of Cyclin F. Scaper is a poorly characterized regulator of cell cycle progression that regulates cyclin A localization (Tsang et al., J Cell Biol, 2007). We have observed that Scaper has a crucial role in regulating cell survival after IR. We propose to further investigate the role of Scaper and its regulation by ubiquitin mediated proteolysis mediated by cyclin F and APC/C (Aim2). Interestingly, deletion and mutations of Scaper are frequent in cancer cell lines and tumors. Our studies may predict patient responses to IR and checkpoint inhibitors in cancers bearing Scaper mutations.
People |
ORCID iD |
Vincenzo D'Angiolella (Principal Investigator) |
Publications
Braams E
(2018)
Keeping CDK18 in balance to prevent DNA replication stress in breast cancer.
in Oncotarget
Burdova K
(2019)
E2F1 proteolysis via SCF-cyclin F underlies synthetic lethality between cyclin F loss and Chk1 inhibition.
in The EMBO journal
Burdova K
(2019)
Cyclin F-Chk1 synthetic lethality mediated by E2F1 degradation
Chen Z
(2022)
Sequence and structural variations determining the recruitment of WNK kinases to the KLHL3 E3 ligase.
in The Biochemical journal
Chen Z
(2022)
Disease-associated KBTBD4 mutations in medulloblastoma elicit neomorphic ubiquitylation activity to promote CoREST degradation.
in Cell death and differentiation
Chen Z
(2019)
Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase.
in Structure (London, England : 1993)
D'Angiolella V
(2017)
Two paths to let the replisome go.
in Cell death and differentiation
Fouad S
(2020)
E2F1: Cause and Consequence of DNA Replication Stress.
in Frontiers in molecular biosciences
Fouad S
(2019)
Cullin Ring Ubiquitin Ligases (CRLs) in Cancer: Responses to Ionizing Radiation (IR) Treatment
in Frontiers in Physiology
Fung E
(2018)
FBXL13 directs the proteolysis of CEP192 to regulate centrosome homeostasis and cell migration.
in EMBO reports
Related Projects
Project Reference | Relationship | Related To | Start | End | Award Value |
---|---|---|---|---|---|
MC_UU_00001/1 | 01/04/2017 | 31/03/2022 | £2,508,000 | ||
MC_UU_00001/2 | Transfer | MC_UU_00001/1 | 01/04/2017 | 31/03/2022 | £2,488,000 |
MC_UU_00001/3 | Transfer | MC_UU_00001/2 | 01/04/2017 | 31/05/2018 | £349,000 |
MC_UU_00001/4 | Transfer | MC_UU_00001/3 | 01/04/2017 | 31/03/2022 | £2,486,000 |
MC_UU_00001/5 | Transfer | MC_UU_00001/4 | 01/04/2017 | 30/09/2019 | £1,732,000 |
MC_UU_00001/6 | Transfer | MC_UU_00001/5 | 01/04/2017 | 31/03/2022 | £2,525,000 |
MC_UU_00001/7 | Transfer | MC_UU_00001/6 | 01/04/2017 | 31/03/2022 | £1,773,000 |
MC_UU_00001/8 | Transfer | MC_UU_00001/7 | 03/01/2019 | 31/03/2023 | £2,682,000 |
MC_UU_00001/9 | Transfer | MC_UU_00001/8 | 01/10/2019 | 31/03/2022 | £1,492,800 |
MC_UU_00001/10 | Transfer | MC_UU_00001/9 | 07/12/2020 | 31/03/2023 | £888,708 |
MC_UU_00001/11 | Transfer | MC_UU_00001/10 | 08/01/2021 | 31/03/2023 | £874,512 |
Description | Croucher Scholarships for Doctoral Study |
Amount | £64,000 (GBP) |
Organisation | The Croucher Foundation |
Sector | Charity/Non Profit |
Country | Hong Kong |
Start | 10/2014 |
End | 10/2016 |
Description | Exploiting passenger synthetic lethality to treat aggressive Glioblastoma |
Amount | £120,000 (GBP) |
Organisation | University of Oxford |
Sector | Academic/University |
Country | United Kingdom |
Start | 05/2019 |
End | 04/2021 |
Description | Investigating the role of ubiquitylation in DNA replication initiation |
Amount | £160,000 (GBP) |
Funding ID | SNSF grant number: P2GEP3_188295 |
Organisation | Swiss National Science Foundation |
Sector | Public |
Country | Switzerland |
Start | 10/2019 |
End | 09/2022 |
Description | The neomorphic role of KBTBD4 in medulloblastoma |
Amount | £1,265,451 (GBP) |
Funding ID | DRCNPG-May21\100002 |
Organisation | Cancer Research UK |
Sector | Charity/Non Profit |
Country | United Kingdom |
Start | 10/2021 |
End | 09/2026 |
Title | A new model system of Medulloblastoma |
Description | An orthotropic rat model where Medulloblastoma human caner cell lines where injected in mouse cerebellum was reported in Embo J , Raducu et al., 2016 |
Type Of Material | Model of mechanisms or symptoms - mammalian in vivo |
Provided To Others? | No |
Impact | We provide evidences in vivo that inhibiting the E3 ligase Fbxl17 is an effective method to suppress Medulloblastoma tumour growth. |
URL | http://emboj.embopress.org/content/early/2016/05/27/embj.201593374 |
Title | Antibody recognising phosphorylated Sufu on S352 |
Description | Antibody recognising phosphorylated Sufu on S352, which is an indicator of the activation of Hedgehog signaling |
Type Of Material | Antibody |
Provided To Others? | No |
Impact | Antibody recognising phosphorylated Sufu on S352, which is an indicator of the activation of Hedgehog singling. The antibody will be distributed upon request. It is being commercialised. |
Title | Interacting partners and substrates of F-box proteins (E3 ubiquitin ligases) |
Description | We have analysed interacting partners of F-box proteins trough liquid chromatography/mass spectrometry analysis. We have published and deposited the list of interacting partner in a public repository (https://thebiogrid.org). Results from 3 other unrelated F-box proteins will be deposited upon publication. |
Type Of Material | Technology assay or reagent |
Provided To Others? | No |
Impact | Data are publicly available and researcher of other discipline can further investigate the role of the E3 ubiquitin ligase Fbxl17 in their fields. |
URL | https://thebiogrid.org/122315/summary/homo-sapiens/fbxl17.html |
Title | Alteration of transcriptional profiles promoted by cyclin F loss through E2F1 deregulation |
Description | European Nucleotide Archive (ENA; https://www.ebi.ac.uk/ena/submit/sra/#studies) with primary accession number PRJEB33738 and secondary accession number ERP116555. |
Type Of Material | Database/Collection of data |
Year Produced | 2019 |
Provided To Others? | Yes |
Impact | N/A |
URL | https://www.ebi.ac.uk/ena/submit/sra/#studies |
Title | Mass spectrometry datasets of F-box proteins_Fbxl17 and Fbxl13 |
Description | Mass spectrometry interactomes deposited on Bio-Grid and proteome exchange |
Type Of Material | Database/Collection of data |
Year Produced | 2017 |
Provided To Others? | Yes |
Impact | no impact but likely other publications form different groups based on the data deposited. |
URL | https://thebiogrid.org/search.php?search=fbxl17&organism=all |
Title | Mass spectrometry of KBTBD4 Wt and Mutant interacting partners |
Description | LC/MS analysis after immunoprecipitation of KBTBD4 Wt and disease associated mutants |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | Provides insights in the function role of the KBTBD4 oncogene |
URL | https://www.nature.com/articles/s41418-022-00983-4 |
Title | RNAseq of medulloblastoma cancer cells expressing KBTBD4 mutated |
Description | This provides a comprehensive view of transcripts deregulated after expression of the oncogenic form of KBTBD4 |
Type Of Material | Database/Collection of data |
Year Produced | 2022 |
Provided To Others? | Yes |
Impact | It provides a large collection of potential targets and biomarkers to identify medulloblastoma with KBTBD4 mutations |
URL | https://www.nature.com/articles/s41418-022-00983-4 |
Description | Duke University- Cyclin F loss in human - development of a new syndrome |
Organisation | Duke University |
Country | United States |
Sector | Academic/University |
PI Contribution | We will analyse cell lines derived from patient with cyclin f mutations |
Collaborator Contribution | They will send cell lines with cyclin f mutations collected from patients and parents. |
Impact | No outputs yet |
Start Year | 2020 |
Description | Mass Spectrometry Analysis of Substrates of E3 ligases involved in cancer cell survival |
Organisation | University of Oxford |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Further investigation of targets identified through Mass Spectrometry |
Collaborator Contribution | Identification of novel E3 substrates through MS analysis |
Impact | Manuscript in The EMBO J+ Manuscript in preparation |
Start Year | 2014 |
Description | Newcastle university Medulloblastoma pathogenesis |
Organisation | Newcastle University |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Provided RNAseq datasets and cell line to establish the role of KBTBD4 in medulloblastoma |
Collaborator Contribution | Analysed the tumour medulloblastoma datasets for CoRESt and KBTBD4 signatures |
Impact | Grant on KBTBD4 |
Start Year | 2019 |
Description | Structural and biological characterisation of KLHLs motif in E3 ubiquitin ligases |
Organisation | University of Oxford |
Department | Structural Genomics Consortium (SGC) |
Country | United Kingdom |
Sector | Public |
PI Contribution | We have worked to understand the biological roles of KLHLs involved in cancer biology. |
Collaborator Contribution | Structural and biophysical properties of Kelch domains to derive novel compounds for cancer therapy |
Impact | Publication: Structural Basis for Recruitment of DAPK1 to the KLHL20 E3 Ligase. Chen Z, Picaud S, Filippakopoulos P, D'Angiolella V, Bullock AN. Structure. 2019 Sep 3;27(9):1395-1404.e4. doi: 10.1016/j.str.2019.06.005. Epub 2019 Jul 3. PMID: 31279627 |
Start Year | 2018 |
Description | UPENN RNAseq analysis of gene enrichments in E3 ligases tumorigenesis |
Organisation | University of Pennsylvania |
Country | United States |
Sector | Academic/University |
PI Contribution | Helped with analysing RNAseq data contributing to medulloblastoma tumorigenesis |
Collaborator Contribution | Helped with analysing RNAseq data contributing to medulloblastoma tumorigenesis |
Impact | Publication on KBTBD4 |
Start Year | 2021 |
Description | dNTP homeostasis in cancer and genome stability |
Organisation | Umea University |
Department | Department of Medical Biochemistry and Biophysics |
Country | Sweden |
Sector | Academic/University |
PI Contribution | We refer to Andrei Chabes to measure the level of dNTPs in cells. |
Collaborator Contribution | Andrei has developed a unique assay to measure dNTPs |
Impact | there are no outputs yet but a manuscript is in preparation |
Start Year | 2017 |
Title | Antibody development to detect activity of Tumor Suppressor Sufu |
Description | Anti-phospho-Sufu polyclonal antibody recognises wild type sufu which is phosphorylated at serine 352. The antibody specificity for the phosphorylated version has been confirmed; it does not react against a non-phosphorylated version of Sufu which has serine 352 substituted by alanine. Sufu is a negative regulator in the hedgehog signaling pathway which directs cell proliferation and patterning during embryogenesis. Sufu down-regulates GLI1- and GLI2-mediated transactivation of target genes and is part of a corepressor complex that acts on DNA-bound GLI1. Required for normal embryonic development. Sufu is ubiquitous in adult tissues. Heterozygous loss of Sufu, in conjunction with the loss of p53, leads to the development of medulloblastoma and rhabdomyosarcoma. Somatic Sufu mutations have been identified in multiple other malignancies, including prostate cancer.This rabbit polyclonal antibody was raised against the following peptide of Sufu: Hu #347~360: CLESDS-pS-pT-AIIPHEL. To ensure the specific recognition of phosphorylated Sufu, the antibody was affinity-purified against a phosphorylated peptide and absorbed against a non-phosphorylated peptide CLESDSSTAIIPHEL. |
IP Reference | |
Protection | Trade Mark |
Year Protection Granted | 2017 |
Licensed | Yes |
Impact | Publication in The EMBO Journal: aducu M, Fung E, Serres S, Infante P, Barberis A, Fischer R, Bristow C, Thézénas ML, Finta C, Christianson JC, Buffa FM, Kessler BM, Sibson NR, Di Marcotullio L, Toftgård R, D'Angiolella V. SCF (Fbxl17) ubiquitylation of Sufu regulates Hedgehog signaling and medulloblastoma development. EMBO J. 2016 Jul 1;35(13):1400-16. doi: 10.15252/embj.201593374. Epub 2016 May 27. PubMed PMID: 27234298; PubMed Central PMCID: PMC4884786. |
Description | Organisation of the internal seminar series 2017-2018 for the Department of Oncology |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | Local |
Primary Audience | Postgraduate students |
Results and Impact | The activity consists of organising seminar from postdoctoral fellow and students at the Institute. During the seminars, postdoc and students present their most recent findings. This is a great opportunity to share ideas, come up with new experimental plans and present novel techniques. The seminar series has already favoured novel collaborations and the acquisition of novel techniques. The long term impact will likely to be a rise in the scientific /publication output of the entire Department/institute |
Year(s) Of Engagement Activity | 2017 |
Description | Student committee shortlisting and interviewing 2017-2018 |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Undergraduate students |
Results and Impact | The student Recruitment process determines the next generation of scientist that will be trained in Oxford at a Department wide level. This could have long term impact on the science generated by the Department and next career destination. |
Year(s) Of Engagement Activity | Pre-2006 |