Understanding tree architecture, form and function in the tropics
Lead Research Organisation:
UNIVERSITY COLLEGE LONDON
Department Name: Geography
Abstract
The basic shape and branching structure of a tree can be distinctive and characteristic, yet there exists no consistent dataset quantifying how tree form varies across species and how it is related to other functional traits of a tree. Understanding the variation in structure and form of trees is important in order to link tree physiology to tree performance, scale fluxes of water and carbon within and among trees, and understand constraints on tree growth and mortality. These topics hold great importance in the field of ecosystem science, especially in light of current and future changes to climate. It is surprising, therefore, that tree structure and form are currently neglected areas of study. There are two primary reasons for this neglect: 1) it is difficult and time-consuming to quantify tree structure in-situ and 2) there is a lack of theory that explicitly links tree form parameters with physiological function.
Recent developments in technology and theory now enable us to overcome these limitations. In this proposal we aim to use new ground-based 3D terrestrial laser scanning technologies (TLS) in combination with recently developed theoretical frameworks to measure and compare tree architecture. We focus on the tropics, since (i) they host the vast majority of broadleaf tree diversity and play a disproportionate role in global and regional carbon and water fluxes, and (ii) the high species diversity of tropical forests (typically 100-250 tree species per hectare) means we can sample a large number of species under almost identical climate and soil conditions, making it more likely to detect overall tendencies in tree form response to environment that are not dominated by the peculiarity of a particular species.
Specifically, we will employ TLS to collect highly-detailed 3D structural information from mature rainforest trees spanning contrasting environments ranging from cloud forests to wet rainforests to dry savanna, and contrasting biogeographical histories from the cloud forests of the Andes through legume-dominated forests of Amazonia and Africa, through the dipterocarp-dominated tall forests of Borneo, to the ancient rainforest flora of Australia. All field sites are locations where we have already collected information of the leaf and wood traits of a number of tropical trees. We plan to achieve three goals: i) definition of quantitative classes of tree form using advanced imaging and computational techniques, ii) development of an understanding of the degree of covariance between tree form and tree leaf and wood functional traits, and the degree of phylogenetic constraint and plasticity in tree form, iii) testing and refinement of metabolic-scaling based approaches to scaling fluxes and productivity of tropical tree communities.
Over the course of three years our team will:
1) Create a database of branch- and canopy-level trait data collected from our field campaigns.
2) Use variation in branching architecture and canopy structure traits to define a suite of branching and canopy traits that allow for the classification of tree form.
3) Assess the scaling of tree form traits within trees and integrate the scaling of tree-form into a mechanistic plant scaling framework.
4) Explore the link between tree-form traits and leaf and wood traits to determine a whole-tree integrated economics spectrum.
In doing so, we hope to acquire a mechanistic understanding of the relationship between tree form, function, phylogeny and environment over a large spatial scale. We expect to find that behind the dazzling variety of shapes and forms found in trees hides a remarkably similar architecture based on fundamental, shared principles.
Recent developments in technology and theory now enable us to overcome these limitations. In this proposal we aim to use new ground-based 3D terrestrial laser scanning technologies (TLS) in combination with recently developed theoretical frameworks to measure and compare tree architecture. We focus on the tropics, since (i) they host the vast majority of broadleaf tree diversity and play a disproportionate role in global and regional carbon and water fluxes, and (ii) the high species diversity of tropical forests (typically 100-250 tree species per hectare) means we can sample a large number of species under almost identical climate and soil conditions, making it more likely to detect overall tendencies in tree form response to environment that are not dominated by the peculiarity of a particular species.
Specifically, we will employ TLS to collect highly-detailed 3D structural information from mature rainforest trees spanning contrasting environments ranging from cloud forests to wet rainforests to dry savanna, and contrasting biogeographical histories from the cloud forests of the Andes through legume-dominated forests of Amazonia and Africa, through the dipterocarp-dominated tall forests of Borneo, to the ancient rainforest flora of Australia. All field sites are locations where we have already collected information of the leaf and wood traits of a number of tropical trees. We plan to achieve three goals: i) definition of quantitative classes of tree form using advanced imaging and computational techniques, ii) development of an understanding of the degree of covariance between tree form and tree leaf and wood functional traits, and the degree of phylogenetic constraint and plasticity in tree form, iii) testing and refinement of metabolic-scaling based approaches to scaling fluxes and productivity of tropical tree communities.
Over the course of three years our team will:
1) Create a database of branch- and canopy-level trait data collected from our field campaigns.
2) Use variation in branching architecture and canopy structure traits to define a suite of branching and canopy traits that allow for the classification of tree form.
3) Assess the scaling of tree form traits within trees and integrate the scaling of tree-form into a mechanistic plant scaling framework.
4) Explore the link between tree-form traits and leaf and wood traits to determine a whole-tree integrated economics spectrum.
In doing so, we hope to acquire a mechanistic understanding of the relationship between tree form, function, phylogeny and environment over a large spatial scale. We expect to find that behind the dazzling variety of shapes and forms found in trees hides a remarkably similar architecture based on fundamental, shared principles.
Planned Impact
We summarise impact across three main groups:
1) Tropical Junior Researchers:
We have a strong track record in involving local researchers and students in our field work, and encouraging them to use data collection to publish dissertations, and local and international papers. Many tropical countries still have only a few scientists with the skills and confidence to publish papers in international standard journals. Within this project we will run explicitly funded training workshops at the start of field campaigns in Peru, Brazil, Ghana and Malaysia, and will invite a student from each of these countries to spend one month in the UK working on data analysis and interpretation. Through our ongoing commitment to tropical research, we have a long-term record of building capacity with partner institutes, assisting students to find graduate positions in a variety of countries and giving them ready access to data and assistance with analysis.
In 2013 we published a special issue of the journal Plant Ecology and Diversity focused on Amazon-Andes ecosystem ecology where there were 12 papers with Peruvian, Bolivian and Brazilian student first authors. We worked closely with the South American students through training workshops and parallel writing on Google Docs, to build their confidence in writing in concise scientific English. We anticipate similar publications with our African and Malaysian students in coming years, and will assist and mentor them through this process.
2) Schools and the general public seeking to understand and be motivated by modern tropical forest science:
3D images of trees and forests are instantly appealing to schoolchildren and adults, and offer an entryway to explain concepts such as branching, fractals and architectural design. There is a thirst in sectors of the UK and wider public for access to the latest science, and a need to motivate schoolchildren about the excitement and importance of environmental science. Tropical forests are seen as particularly important and exciting, but their remoteness means that few have the chance to directly experience them and understand the work that scientists do there. Using Pathways to Impact funding on a recent NERC grant (focussed on African forests and on the Andes transect), we have just developed an innovative Geoweb Portal that brings together data, imagery and stories from our global network of ecosystem ecology sites (40+ sites, in Peru, Brazil, Bolivia, Chile, UK, Ghana, Gabon and Malaysia; (gem.tropicalforests.ox.ac.uk). Innovative aspects of the site include a "plots social network" where students in different regions (e.g. Peru and Ghana) can communicate with each other about techniques, science and questions, and a "public questions forum" where members of the public can pose questions that are answered by researchers and students. The whole Portal is designed in a form where it is easy for researchers and students to upload information, text and imagery. We have requested funds to support development of a part of this website dedicated to explanation of our tree architecture science, and to prepare materials and displays for the Royal Society Summer Exhibition and other public events.
3) The scientific community engaged in understanding tropical forest ecology and function, and its sensitivity to environmental change:
The scientific beneficiaries have been outlined in the academic beneficiaries section.
1) Tropical Junior Researchers:
We have a strong track record in involving local researchers and students in our field work, and encouraging them to use data collection to publish dissertations, and local and international papers. Many tropical countries still have only a few scientists with the skills and confidence to publish papers in international standard journals. Within this project we will run explicitly funded training workshops at the start of field campaigns in Peru, Brazil, Ghana and Malaysia, and will invite a student from each of these countries to spend one month in the UK working on data analysis and interpretation. Through our ongoing commitment to tropical research, we have a long-term record of building capacity with partner institutes, assisting students to find graduate positions in a variety of countries and giving them ready access to data and assistance with analysis.
In 2013 we published a special issue of the journal Plant Ecology and Diversity focused on Amazon-Andes ecosystem ecology where there were 12 papers with Peruvian, Bolivian and Brazilian student first authors. We worked closely with the South American students through training workshops and parallel writing on Google Docs, to build their confidence in writing in concise scientific English. We anticipate similar publications with our African and Malaysian students in coming years, and will assist and mentor them through this process.
2) Schools and the general public seeking to understand and be motivated by modern tropical forest science:
3D images of trees and forests are instantly appealing to schoolchildren and adults, and offer an entryway to explain concepts such as branching, fractals and architectural design. There is a thirst in sectors of the UK and wider public for access to the latest science, and a need to motivate schoolchildren about the excitement and importance of environmental science. Tropical forests are seen as particularly important and exciting, but their remoteness means that few have the chance to directly experience them and understand the work that scientists do there. Using Pathways to Impact funding on a recent NERC grant (focussed on African forests and on the Andes transect), we have just developed an innovative Geoweb Portal that brings together data, imagery and stories from our global network of ecosystem ecology sites (40+ sites, in Peru, Brazil, Bolivia, Chile, UK, Ghana, Gabon and Malaysia; (gem.tropicalforests.ox.ac.uk). Innovative aspects of the site include a "plots social network" where students in different regions (e.g. Peru and Ghana) can communicate with each other about techniques, science and questions, and a "public questions forum" where members of the public can pose questions that are answered by researchers and students. The whole Portal is designed in a form where it is easy for researchers and students to upload information, text and imagery. We have requested funds to support development of a part of this website dedicated to explanation of our tree architecture science, and to prepare materials and displays for the Royal Society Summer Exhibition and other public events.
3) The scientific community engaged in understanding tropical forest ecology and function, and its sensitivity to environmental change:
The scientific beneficiaries have been outlined in the academic beneficiaries section.
Publications


Adams J
(2018)
Decoupling Canopy Structure and Leaf Biochemistry: Testing the Utility of Directional Area Scattering Factor (DASF)
in Remote Sensing

Binks O
(2021)
Canopy wetness in the Eastern Amazon
in Agricultural and Forest Meteorology

Burt A
(2020)
Assessment of Bias in Pan-Tropical Biomass Predictions
in Frontiers in Forests and Global Change

Burt A
(2021)
New insights into large tropical tree mass and structure from direct harvest and terrestrial lidar
in Royal Society Open Science

Calders K
(2020)
Terrestrial laser scanning in forest ecology: Expanding the horizon
in Remote Sensing of Environment

Calders K
(2018)
Realistic Forest Stand Reconstruction from Terrestrial LiDAR for Radiative Transfer Modelling
in Remote Sensing
Description | New measurements of fine branching architecture are providing new insight into how structure scales across tree form. We have also developed new tools to measure and analyse these aspects. We have shown that fine branching makes up a larger part of tropical tree mass and structure than previously thought. We have also initial results that our methods can be used to capture this much more widely. Both of these aspects are allowing us to show how tree function and architecture are quantitatively related. The tools we have developed to do this, are likely to be of much wider interest and use to the forest ecology community. One of the open questions about climate impacts on forests is whether there will be increased or more rapid turnover of woody carbon in branches, into the soil. Answering that requires knowing how much material is in the branches in the first place - and our work is the first to show this from 3D measurements. Initial results from the project have presented new methods to extract 3D information from tropical tree architecture. This is already being used to test hypothesis related to structural rules in the tropics. |
Exploitation Route | Understanding of architecture will help to explain some of the key aspects of tropical forest function, in particular the role of surface area in respiration (currently poorly known) as well as the ability to generalise. Finding key structural attributes and their correlation with environmental change. The data we are collecting will be of wider interest to forest ecologists interested in the influence of structure on function. New tools have been developed and published, along with new data archives to allow other researchers to extract structure information from tropical trees. |
Sectors | Environment |
Description | Impact on practice: inclusion of lidar data in public exhibition at V & A (The Future Starts Here), testimony from curator Dr. Rory Hyde |
Geographic Reach | Multiple continents/international |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | Exhibition attended by over 100k people in London, and success of the exhibition led to uptake internationally (exhibition is now touring worldwide). As per Dr. Hyde's testimony, the inclusion of the lidar data led to a change in the way the curation was approached, from being mainly artefact-led, to including data as key part. Dr. Hyde's testimony can be provided as required. |
Description | Improved valuation of urban trees in urban environment planning and policy |
Geographic Reach | Local/Municipal/Regional |
Policy Influence Type | Influenced training of practitioners or researchers |
Impact | Influence on leading practitioners. Kireon Doick, Head of the Urban Forest Research Group, Forest Research said of this work "Urban trees are a very important resource for all those who live in, visit or work in towns and cities, for they provide us with a plethora of health and well-being benefits, and they keep these places cleaner and more attractive. Canopy cover values released last year show that for some areas the abundance of trees is also higher than in the countryside (averaging: 16% (towns) and 10% (pan-England in 2016)). This means we should expect our urban trees to also be providing us will an important carbon sink, helping to combat the global trend of increasing carbon dioxide in the atmosphere. This new work by UCL is a welcome development in advancing this understanding, and I look forward to hearing how the work continues to develop." Councillor Adam Harrison, Cabinet Member for Improving Camden's Environment said of the work: "Camden is really pleased to partner with UCL, based in the borough, in order to unlock the benefits of trees not just for our own residents but for people's benefit round the world." |
Description | Influence on urban forest planning and management leaders and professionals: Sir Harry Studholme, Chair of the Forestry Commission said of this work: "The trees in our cities are important. They matter because they are close to people and are a key component of our urban environment providing beauty, shade and homes for myriad species as well as absorbing carbon and pollutants. The work being carried out at UCL is adding colour and detail to this understanding" |
Geographic Reach | National |
Policy Influence Type | Implementation circular/rapid advice/letter to e.g. Ministry of Health |
Description | Providing input to Friends of the Earth campaign to double tree cover in the UK (see https://friendsoftheearth.uk/trees/dan-snow-investigates) |
Geographic Reach | National |
Policy Influence Type | Influenced training of practitioners or researchers |
URL | https://friendsoftheearth.uk/trees/tree-just-tree-or-it |
Description | A 3D perspective on the effects of topography and wind on forest height and dynamics |
Amount | £651,489 (GBP) |
Funding ID | NE/S010750/1 |
Organisation | Natural Environment Research Council |
Sector | Public |
Country | United Kingdom |
Start | 03/2019 |
End | 08/2024 |
Description | ESA ForestScan: New technology for characterising forest structure and biomass at 'Super Sites' for EO cal/val across the tropics |
Amount | € 500,000 (EUR) |
Organisation | European Space Agency |
Sector | Public |
Country | France |
Start | 02/2021 |
End | 01/2023 |
Description | EU Horizon 20:20 |
Amount | € 1,900,000 (EUR) |
Funding ID | 757526 |
Organisation | European Commission |
Department | Horizon 2020 |
Sector | Public |
Country | European Union (EU) |
Start | 01/2018 |
End | 12/2021 |
Description | NCEO capital funding award |
Amount | £25,000 (GBP) |
Organisation | National Centre for Earth Observation |
Sector | Academic/University |
Country | United Kingdom |
Start | 05/2017 |
End | 09/2017 |
Description | TOMOSENSE: Forest measurements in support of ESA airborne cal/val for BIOMASS |
Amount | € 20,000 (EUR) |
Organisation | European Space Agency |
Sector | Public |
Country | France |
Start | 03/2021 |
End | 03/2022 |
Title | 3D lidar tree point clouds and models |
Description | A collection of 3D trees as used in the p |
Type Of Material | Database/Collection of data |
Year Produced | 2018 |
Provided To Others? | Yes |
Impact | None as yet. |
Description | NASA GEDI |
Organisation | National Aeronautics and Space Administration (NASA) |
Country | United States |
Sector | Public |
PI Contribution | Calibration & validation work with the NASA GEDI team. |
Collaborator Contribution | Providing funding for fieldwork in US and Gabon. |
Impact | Generation of datasets and modelling tools for NASA GEDI team, and wider community of biomass research. Collaboration is multi-disciplinary as has science focus, but for policy delivery (via feeding into REDD+ MRV schemes). |
Start Year | 2017 |
Title | TLS2Trees: a scalable tree segmentation pipeline for TLS data |
Description | Enables large-scale extraction of individual trees from larger point clouds collected using terrestrial laser scanner data. |
Type Of Technology | Software |
Year Produced | 2022 |
Open Source License? | Yes |
Impact | Already being used by a number of research groups. |
Description | BBC documentary: Judi Dench: My Passion for Trees |
Form Of Engagement Activity | A broadcast e.g. TV/radio/film/podcast (other than news/press) |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Invited to participate in a flagship documentary exploring the trees in Dame Judi Dench's garden, as part of an exploration of her love of trees. Scanned an oak tree in her garden, and then presented the results to her during various interviews and pieces to camera. Featured in premiere screening at Kew introduced by the director of Kew Gardens, and then featured in many places in the national press. Broadcast at Xmas prime time (BBC1 20/12/2017) reaching an audience over 4 million people. Tree data featured in BBC Arts Facebook page, viewed by > 45k people as of Feb 2018: https://www.facebook.com/BBCArtsOnline/videos/2403675943190879/ |
Year(s) Of Engagement Activity | 2017 |
URL | http://disneytls.blogspot.co.uk/2017/10/bbc-docs-featuring-our-work.html |
Description | CEOS biomass protocol |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Invited to co-lead the CEOS Working Group on Calibration and Validation (WGCV) for above ground biomass. The CEOS WGCV groups develop consensus protocols on international standards for earth observation products. My work on lidar measurement of biomass, particularly in tropical forests, has led to this invitation. The role involves leading the development of a protocol to allow new satellite observations of biomass to be calibrated and validated in such a way that they are as widely-used as possible by researchers and policy-makers alike. |
Year(s) Of Engagement Activity | 2017 |
URL | https://lpvs.gsfc.nasa.gov/Biomass/AGB_home.html |
Description | GEO BON Ecosystem Function Group |
Form Of Engagement Activity | A formal working group, expert panel or dialogue |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Professional Practitioners |
Results and Impact | Invited to sit on GEO BON Ecosystem Function Working Group. The aim of the Working groups (WGs) centred on Essential Biodiversity Variables (EBVs) are expected to deliver on four fronts over the coming three years: (1) identify research opportunities (relevant to ecosystem functions) supporting the identification/implementation of EBVs; (2) derive/identify potential datasets; (3) articulate the links between these EBVs and global indicators; and (4) provide guidance to national biodiversity networks in terms of in situ monitoring of these EBVs (through, eg, the production of reports/guidelines). |
Year(s) Of Engagement Activity | 2017,2018 |
URL | http://geobon.org/working-groups/ecosystem-function/ |
Description | Interviews for national news (multiple) |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | press release around paper on urban biomass, picked up by multiple print and online media sources, live interviews (BBC TV, radio, Sky News). |
Year(s) Of Engagement Activity | 2018 |
Description | Press activities around new papers on Weighing Trees with Lasers |
Form Of Engagement Activity | A press release, press conference or response to a media enquiry/interview |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Media (as a channel to the public) |
Results and Impact | Press release around release of new papers on laser measurements of forests, featuring in a series of papers in the Royal Society Interface journal, coming out of our themed meeting in February 2017. My work featured on the cover of the journal and an accompanying press release by UCL was picked up widely by the print and broadcast media, including: BBC and Sky radio, Sky News, Independent, Mail Online, BT news etc., leading to various radio and print interviews. |
Year(s) Of Engagement Activity | 2018 |
URL | http://disneytls.blogspot.co.uk/2018/02/royal-society-super-special-issue-on-tls.html |
Description | Royal Society Workshop |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Other audiences |
Results and Impact | A Royal Society-funded workshop on 'The terrestrial laser scanning revolution in forest ecology'. Co-organised the meeting, secured funding from the Royal Society, and then acted as joint associate editor for the resulting special issue of the Royal Society journal. Aimed to showcase widely the new opportunities for TLS measurements in ecology. |
Year(s) Of Engagement Activity | 2017 |
URL | https://royalsociety.org/science-events-and-lectures/2017/02/forest-ecology/ |
Description | The Conversation piece on paper on Urban Forests |
Form Of Engagement Activity | Engagement focused website, blog or social media channel |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | An invited piece based on the press release on our work on urban forests. 80K reads so far since publication. |
Year(s) Of Engagement Activity | 2018 |
URL | http://theconversation.com/urban-forests-can-store-almost-as-much-carbon-as-tropical-rainforests-988... |
Description | Victoria and Albert Museum exibition |
Form Of Engagement Activity | Participation in an activity, workshop or similar |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Public/other audiences |
Results and Impact | My work features in an ongoing major V & A exhibition: The Future Starts Here. This includes a video installation showing lidar data collected in tropical rainforests and shown with a caption. |
Year(s) Of Engagement Activity | 2018 |