Engineering polysaccharides in plants
Lead Research Organisation:
University of Cambridge
Department Name: Biochemistry
Abstract
Both historically and contemporarily, plant cell walls have contributed a wealth of natural resources to humankind, and, largely speaking, this utility is indebted to their complement of diverse carbohydrate polymers, the polysaccharides. Our research is concerned with a particularly interesting and abundant polysaccharide called xylan that is thought to have roles in wall strength and digestibility in plants, as well as in human health following consumption of vegetable foods. Xylan possesses a linear backbone of polymerised xylose monomers, but its properties are influenced by length and augmented by an assortment of short branches that 'decorate' the backbone and differ in structure and spacing. We are therefore interested in engineering the backbone length and the nature of this decoration as a means to producing novel materials and products from cell wall material.
However, we currently have very little understanding of how the backbone polymer of xylan is made. This represents an obstacle to xylan engineering because we cannot currently explain how the backbone comes to be decorated in a precise pattern, which may require co-ordination between backbone synthesis and decoration. It is currently thought that three enzymes (putatively forming a 'xylan synthase complex'), rather than one, are needed for backbone synthesis alone, and understanding why such co-operation is necessary will help us determine whether it is linked to regulation of decoration. We would also like to know why separate sets of enzymes have evolved for backbone synthesis of xylan in the growing primary and the thickened secondary plant cell walls, and whether this is significant in determining xylan properties.
In this project, we aim to determine the structure and mechanism of the xylan synthase protein complex. Using synthetic biology tools, we will employ systematic gene cloning and protein expression approaches in producing the enzymes of interest. Use of this engineering approach will facilitate screening of activities of enzymes and enzyme mutants. Ultimately we aim to resolve the atomic structure of the xylan synthase complex by cryo-electron microscopy. The information will conceivably permit modulation of xylan decoration and backbone length and thus allow directed engineering of the plant cell wall.
However, we currently have very little understanding of how the backbone polymer of xylan is made. This represents an obstacle to xylan engineering because we cannot currently explain how the backbone comes to be decorated in a precise pattern, which may require co-ordination between backbone synthesis and decoration. It is currently thought that three enzymes (putatively forming a 'xylan synthase complex'), rather than one, are needed for backbone synthesis alone, and understanding why such co-operation is necessary will help us determine whether it is linked to regulation of decoration. We would also like to know why separate sets of enzymes have evolved for backbone synthesis of xylan in the growing primary and the thickened secondary plant cell walls, and whether this is significant in determining xylan properties.
In this project, we aim to determine the structure and mechanism of the xylan synthase protein complex. Using synthetic biology tools, we will employ systematic gene cloning and protein expression approaches in producing the enzymes of interest. Use of this engineering approach will facilitate screening of activities of enzymes and enzyme mutants. Ultimately we aim to resolve the atomic structure of the xylan synthase complex by cryo-electron microscopy. The information will conceivably permit modulation of xylan decoration and backbone length and thus allow directed engineering of the plant cell wall.
People |
ORCID iD |
Paul Dupree (Primary Supervisor) | |
Louis Wilson (Student) |
Studentship Projects
Project Reference | Relationship | Related To | Start | End | Student Name |
---|---|---|---|---|---|
EP/N509620/1 | 01/10/2016 | 30/09/2022 | |||
1796471 | Studentship | EP/N509620/1 | 01/10/2016 | 30/09/2020 | Louis Wilson |
Description | We have increased our understanding of the curious physical interactions required between enzymes in order to make xylan, an important plant cell wall polysaccharide. We are currently investigating why these interactions are required; however, these findings provide hints at how enzymes are localised to and within the Golgi apparatus. We have revealed the atomic structure of a human enzyme that is related to the enzymes involved in xylan synthesis. This will likely have some breakthrough impact in the field, as there is no structure previously reported for this family of enzymes. The structure, which is essentially two enzymes combined into one protein, sheds insight on the synthesis of heparan sulfate and heparin, cell surface molecules that play important roles in cancer and infections. We have also been able to develop a method for monitoring the synthesis of heparan sulfate/heparin. We have subsequently used this structure to predict and identify novel enzyme activities for the modification of xyloglucan, an important plant cell wall polysaccharide. We are now able to produce novel xyloglucan poly- and oligosaccharides, and have developed new methods to better characterise xyloglucan structures. As a result, we now have a better picture of the structures of some dietary fibres from foods, and understand better how they are digested in the intestines. |
Exploitation Route | The enzyme structure will permit new research questions and will useful to researchers investigating rare genetic disorders in humans involving defective heparan synthesis. The techniques for determining xyloglucan structure will facilitate the work of others in this field. Our method for making novel oligosaccharides could be used to produce commercial compounds for research purposes. Our work will hopefully encourage others to further examine the full diversity in structure of plant fibres, which will lead to progress in our understanding of gut health. |
Sectors | Agriculture, Food and Drink,Pharmaceuticals and Medical Biotechnology |
Description | Glycosyltransferase structural biology |
Organisation | Lund University |
Department | Department of Experimental Medical Science |
Country | Sweden |
Sector | Academic/University |
PI Contribution | Protein purification, cryo-electron microscopy techniques, enzymatic assays |
Collaborator Contribution | Protein expression, enzymatic assays |
Impact | Upcoming high-impact structural biology paper |
Start Year | 2018 |
Description | Nicotiana benthamiana transient expression systems |
Organisation | Leaf Expression Systems |
Country | United Kingdom |
Sector | Private |
PI Contribution | We have provided feedback about expression vectors. |
Collaborator Contribution | Leaf Expression Systems have helped us to optimise our protein expressions in tobacco |
Impact | New protocols for protein expression |
Start Year | 2018 |