Genome-wide analysis of small heat shock protein function in ageing

Lead Research Organisation: University of Liverpool
Department Name: Institute of Translational Medicine

Abstract

Maintaining protein homeostasis is critical for healthy ageing. Indeed, misfolding of proteins and their consequent aggregation causes many common diseases, notably neurodegenerative disorders such as Alzheimer's. Small heat shock proteins (sHSPs) play an important role in proteostasis by binding to misfolded proteins and preventing their aggregation. Studies in yeast, Drosophila and C. elegans have shown that inactivation of sHSPs shortens lifespan, whereas increased sHSP gene expression extends lifespan. Clearly, sHSPs are important and evolutionarily conserved determinants of healthy ageing. However, the functionally relevant client proteins that sHSPs protect and the cellular processes they help to maintain remain unknown. We propose to address this key question by initially performing genome-wide functional screens in yeast, and subsequently testing for conserved relevance in an animal model. Yeast are ideal for this approach as combinations of deletion mutations covering the entire genome can be engineered into individual strains using robotic procedures and the phenotypes of the resulting double/triple mutants can be quantified by automated imaging and computational analysis. Lydall brings considerable expertise in this approach and pioneered the development of Quantitative Fitness Analysis (QFA) to provide rigorous automated quantification of yeast growth rates. Morgan works on yeast ageing and provided the first evidence for a role of sHSPs in yeast lifespan determination. In this project, libraries of mutants with sHSP genes deleted will be generated to enable functional mapping of sHSP genetic interactions on a genome-wide scale. QFA findings will be reconfirmed experimentally and all validated genes subjected to bioinformatic analyses to identify functionally relevant cellular pathways and processes. Significantly enriched functional groups will then be tested for effects on ageing and protein aggregation in yeast by mutating appropriate genes. Any such identified genes with orthologues in higher organisms will then be tested for conserved effects on lifespan and protein homeostasis in nematodes, capitalising on the expertise of Barclay in the use of C. elegans. Altogether, this project will provide training in modern genetic and genomic techniques using two key model organisms and will provide systems-level insights into the conserved functions of sHSPs in healthy ageing.

Publications

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Studentship Projects

Project Reference Relationship Related To Start End Student Name
BB/M011186/1 01/10/2015 31/03/2024
1797145 Studentship BB/M011186/1 01/10/2016 31/03/2021 Richard Campion
 
Description Possible pathways and genes assoicated with the sHSPs and ageing have been identified through the SGA process and have been replicated.
Exploitation Route Further research into how these pathways directly influene the ageing process and the exact mechanisms to how they interact with the sHSPs could take place.
Sectors Healthcare

 
Description Claire Eyers - Liverpool - Mass Spec 
Organisation University of Liverpool
Department Institute of Integrative Biology
Country United Kingdom 
Sector Academic/University 
PI Contribution My contributions included sample preperation.
Collaborator Contribution Partner contributions included use of mass spec and data analysis
Impact -
Start Year 2018
 
Description Gourlay Campbell - Kent - Respirometry 
Organisation University of Kent
Country United Kingdom 
Sector Academic/University 
PI Contribution My contributions included handing over yeast samples, and the data from the initial run of the respirometry.
Collaborator Contribution Partner contributions included time, use of mahines, sample prep, data analysis and more runs from my samples.
Impact -
Start Year 2019