Evolutionary guided engineering to improve C4 photosynthesis - AfS, ENWW

Lead Research Organisation: University of Oxford
Department Name: Interdisciplinary Bioscience DTP

Abstract

There are three different types of photosynthesis (C3, C4, and CAM) that plants use to capture energy form sunlight and store it in carbohydrates. Both C4 and CAM photosynthesis are evolutionary adaptations of C3 photosynthesis. C4 plants are on average more efficient than their C3 ancestors at converting solar energy into biomass. Interestingly, the C4 pathway evolved at least 62 times independently from a C3 ancestor plant. Thus, it is one of the most frequently occurring examples of convergent evolution in eukaryotic biology. Although we have a detailed understanding of the biochemistry of C4 photosynthesis, we know little about the molecular evolution that has enabled and optimised the C4 pathway. This first aim of this project is to address this knowledge gap and identify the key molecular sequence changes that modulate the efficiency of C4 photosynthesis. This aim will be achieved by analysing a large transcriptomic dataset that contains 18 independent origins of C4 photosynthesis to identify genes and sites within genes that show evidence of selection. Given that C4 photosynthesis has evolved at least 62 times in a relatively short period of time, it is likely that in certain C4 lineages individual gene products will have better characteristics or efficiencies than the orthologous counterpart other lineages. Thus the second aim of this project is to utilise this dataset to improve the efficiency of C4 photosynthesis in the model plant Setaria viridis. This aim will be achieved by characterising variants of gene products that were identified in the first part of the project through in vitro and in planta experimentation. Thus in summary this project will identify the protein sequence changes that occur when plants evolve C4 photosynthesis, identify those changes that best adapt the protein for function in C4 photosynthesis, and determine the impact that engineering the best performing variants has on photosynthesis and yield in the C4 model plant Setaria viridis. If successful, this evolutionarily guided approach could provide a paradigm for improving photosynthesis in the world's most important C4 crops.

BBSRC priority areas
1) Food, nutrition and health 2) Bioenergy: generating new replacement fuels for a greener and sustainable future. 3) Data driven biology 4) Sustainable enhancing agricultural production 5) Systems approaches to the biosciences 6) New strategic approaches to industrial biotechnology

Publications

10 25 50

Studentship Projects

Project Reference Relationship Related To Start End Student Name
BB/M011224/1 01/10/2015 31/03/2024
1807343 Studentship BB/M011224/1 01/10/2015 30/09/2019
 
Description I developed an algorithm that allows me to identify molecular sequence changes in protein-coding genes. I applied that algorithm to a large dataset of various plant species to find engineering targets to improve the efficiency of photosynthesis. These findings will contribute to our understanding where the limitations of photosynthesis are and subsequently improve the efficiency to create more yield in crop plants.
Exploitation Route These findings are part of bioinformatics analysis pipeline. The next goal is to evaluate these sites in the lab to confirm that these targets do have an impact on photosynthetic efficiency.
Sectors Agriculture, Food and Drink,Environment,Manufacturing, including Industrial Biotechology

 
Description Plant Science Masterclass Series 
Form Of Engagement Activity Participation in an open day or visit at my research institution
Part Of Official Scheme? No
Geographic Reach Regional
Primary Audience Schools
Results and Impact Plant Science Masterclasses for Schools

University of Oxford Botanic Garden runs a popular programme of science activities for secondary science students in conjunction with Oxford University Museum of Natural History.

In the last academic year 1548 A level students attended 26 events facilitated by 57 research scientists at various stages of their career.

There are however, two issues we would like to address:
• Plant science is underrepresented in the overall balance of programming for schools.
• Current provision also is based largely on 'one off' events. Some pupils attend more than one event but there is little sustained contact with pupils that have a particular interest in biology.

For these reasons University of Oxford Botanic Garden would like to offer a series of talks and discussions as opposed to one off events. With school students attending all sessions in the masterclass series it is possible to have more ambitious aims.
• Students would experience high quality university teaching in an engaging and accessible format.
• Students would have the opportunity to develop their understanding and express their opinions
• Students would have the opportunity to explore the links between plant sciences and major global issues.
• Students would be encouraged to apply for higher education courses with a significant amount of plant science content.
Year(s) Of Engagement Activity 2017