Dissecting inositol pyrophosphates signalling
Lead Research Organisation:
University College London
Department Name: UNLISTED
Abstract
My research is focused on the study of inositol phosphates, a large family of small molecules that regulate many essential and basic functions in all living organisms, including heart muscle contraction, the release of neurotransmitters in the brain, mammalian cell survival and the migration of cells of the immune system. Two new members of this family (called IP7 and IP8) have the exceptionally unusual property of containing high energy Pyro-phosphate bonds. This is similar to the high energy phosphate bond found in ATP, the main energy storage molecule found in all cells. Like ATP, IP7 and IP8 are also found in all cells analyzed so far, ranging from fungi to humans, but very little is known about their physiological functions. The release of energy from their high energy bonds could, potentially, drive a variety of fundamental biochemical processes and the goal of my research is to identify the physiological role of this novel and exciting class of high-energy molecules.
Technical Summary
Inositol phosphates (IP) occur ubiquitously in biological tissues. The most widely studied IP is inositol 1,4,5-trisphosphate (IP3), the second messenger that triggers calcium release from intracellular stores. Interestingly, the six carbons that comprise the fully phosphorylated inositol ring of IP6 (Inositol hexakisphosphate, also known as phytic acid) can be further phosphorylated, creating more polar inositol polyphosphates. These higher inositol phosphates contain one, two or more high-energy Pyro-phosphate bonds, similar to the high-energy bonds present in ATP. The best-characterized inositol pyrophosphates are the diphosphoinositol pentakisphosphate (IP7) and the bis-diphosphoinositol tetrakisphosphate (IP8). In cells the IP6 concentration is very stable, while IP7 and IP8 are metabolized at a very high rate. Every hour, 20 to 50% of the large IP6 reservoir cycles through inositol pyrophosphates, and it has been suggested that this cycle represent a molecular switch activity that regulates intracellular signalling.||Our ability to produce radiolabeled IP7 with high specific activity has allowed us to detect the direct transfer of the radiolabel beta phosphate from IP7 to proteins. This phosphorylation mechanism defines a yet new kind of protein post-translational modification. A recent study has shown that inositol pyrophosphates donate the phosphate group to pre-phosphorylated serines, thus generating a pyro-phosphorylated protein. Although we are able to reproducibly transfer phosphate moieties from IP7 to pre-phosphorylated serine of proteins in vitro and have indirect evidence that IP7 can directly mediate phosphorylation in vivo, the molecular mechanisms underlying IP7-dependent protein pyro-phosphorylation in vivo and the physiological consequence of such, are not fully elucidated yet. The main objective of my laboratory is to identify the physiological functions of inositol pyro-phosphates. We are employing several experimental models from yeast Saccharomyces cerevisiae, a simple but powerful genetic model, to mouse knockout to mimic human physiology. We are routinely using several biochemical, molecular biology and cell biology techniques.||It has become increasingly clear that inositol pyrophosphates have a very basic signalling function inside all eukaryotic cells. It is likely that the inositol pyro-phosphates have evolved dedicated roles due to their unique biochemistry. The potential therapeutic potential of such research is supported by the recent identification of the critical role inositol pyrophosphates in the regulation of insulin secretion and oncogenic processes. We have substantially contributed to both studies.
Organisations
- University College London (Lead Research Organisation)
- Eberhard Karls University of Tübingen (Collaboration)
- HARVARD UNIVERSITY (Collaboration)
- University College London (Collaboration)
- University of Zurich (Collaboration)
- University of Pennsylvania (Collaboration)
- University of Georgia (Collaboration)
- Heinrich Heine University Düsseldorf (Collaboration)
- Medical Research Council (MRC) (Collaboration)
- UNIVERSITY OF SYDNEY (Collaboration)
Publications
Azevedo C
(2015)
Protein polyphosphorylation of lysine residues by inorganic polyphosphate.
in Molecular cell
Azevedo C
(2014)
Functions of inorganic polyphosphates in eukaryotic cells: a coat of many colours.
in Biochemical Society transactions
Azevedo C
(2016)
The new world of inorganic polyphosphates.
in Biochemical Society transactions
Azevedo C
(2017)
Eukaryotic Phosphate Homeostasis: The Inositol Pyrophosphate Perspective.
in Trends in biochemical sciences
Azevedo C
(2018)
Screening a Protein Array with Synthetic Biotinylated Inorganic Polyphosphate To Define the Human PolyP-ome
in ACS Chemical Biology
Azevedo C
(2016)
Why always lysine? The ongoing tale of one of the most modified amino acids.
in Advances in biological regulation
Azevedo C
(2020)
Development of a yeast model to study the contribution of vacuolar polyphosphate metabolism to lysine polyphosphorylation.
in The Journal of biological chemistry
Burton A
(2013)
Inositol pyrophosphates regulate JMJD2C-dependent histone demethylation.
in Proceedings of the National Academy of Sciences of the United States of America
Cordeiro CD
(2017)
The inositol pyrophosphate synthesis pathway in Trypanosoma brucei is linked to polyphosphate synthesis in acidocalcisomes.
in Molecular microbiology
Crocco P
(2016)
Contribution of polymorphic variation of inositol hexakisphosphate kinase 3 (IP6K3) gene promoter to the susceptibility to late onset Alzheimer's disease.
in Biochimica et biophysica acta
Related Projects
Project Reference | Relationship | Related To | Start | End | Award Value |
---|---|---|---|---|---|
MC_UU_12018/1 | 31/07/2013 | 30/03/2017 | £1,079,000 | ||
MC_UU_12018/2 | Transfer | MC_UU_12018/1 | 31/07/2013 | 30/03/2017 | £989,000 |
MC_UU_12018/3 | Transfer | MC_UU_12018/2 | 31/07/2013 | 30/03/2017 | £925,000 |
MC_UU_12018/4 | Transfer | MC_UU_12018/3 | 31/07/2013 | 30/03/2017 | £908,000 |
MC_UU_12018/5 | Transfer | MC_UU_12018/4 | 31/07/2013 | 30/03/2017 | £1,560,000 |
MC_UU_12018/6 | Transfer | MC_UU_12018/5 | 31/07/2013 | 30/03/2017 | £1,234,000 |
MC_UU_12018/7 | Transfer | MC_UU_12018/6 | 31/07/2013 | 30/03/2017 | £1,070,000 |
Title | LMCB Recruitment Poster |
Description | A postdoc in my laboratory, Miranda Wilson, designed a poster that was chosen to advertise the LMCB's PhD programme. This poster will be sent to institutions around Europe for display. |
Type Of Art | Artwork |
Year Produced | 2014 |
Impact | Our institute will now be more competitive in attracting high quality students from UK and abroad. |
Description | Functional characterization of a new, evolutionarily conserved myo-inositol-hexakis-phosphate kinase in mammalian cells (Funktionelle Charakterisierung einer neuen, evolutiv konservierten myo -Inositol-Hexakis-Phosphat Kinase in Säugerzellen) |
Amount | € 170,000 (EUR) |
Organisation | German Research Foundation |
Sector | Charity/Non Profit |
Country | Germany |
Start | 06/2019 |
End | 06/2021 |
Description | Marie Curie Intra-European Fellowships |
Amount | € 195,454 (EUR) |
Funding ID | EU project 752903 - PHEMDD - GAP-752903 |
Organisation | Marie Sklodowska-Curie Actions |
Sector | Charity/Non Profit |
Country | Global |
Start | 06/2017 |
End | 07/2019 |
Title | Fluorescence analysis of inositol phosphate kinase activity |
Description | We discovered the ability of InsP5 and InsP6 to induce a DAPI excitation shift at 420 nm and fluorescence emission at 550 nm. Lower phosphorylated forms of inositol, such as IP3 and IP4, are not able to induce DAPI fluorescence. This difference open the opportunity to monitor the inter conversion between lower and higher phosphorylate inositol phosphate by simple fluorescence, without the need of sophisticated chromatography and radioactive tracers. |
Type Of Material | Technology assay or reagent |
Year Produced | 2014 |
Provided To Others? | Yes |
Impact | We have performed high throughput small molecules inhibitors screening for several inositol phosphates kinase. |
Title | Ti02 purification of inositol phosphates |
Description | New purification procedure to extract inositol phosphate from cells |
Type Of Material | Technology assay or reagent |
Year Produced | 2014 |
Provided To Others? | Yes |
Impact | One published paper describing this new technology A novel method for the purification of inositol phosphates from biological samples reveals that no phytate is present in human plasma or urine. Wilson MS, Bulley SJ, Pisani F, Irvine RF, Saiardi A. Open Biol. 2015 Mar;5(3):150014. Many paper are coming out using this methods that have helped to develop new chemical tools, such: Prometabolites of 5-Diphospho-myo-inositol Pentakisphosphate. Pavlovic I, Thakor DT, Bigler L, Wilson MS, Laha D, Schaaf G, Saiardi A, Jessen HJ. Angew Chem Int Ed Engl. 2015 Aug 10;54(33):9622-6. |
Description | ACR : IPMK Functional studies |
Organisation | University of Pennsylvania |
Department | Perelman School of Medicine |
Country | United States |
Sector | Academic/University |
PI Contribution | Reagents and discussion |
Collaborator Contribution | Reagents and discussion and ideas |
Impact | WE publish two reviews, one on PubMed 17981594, the second is an important book chapter in Wiley Encyclopedia of Chemical Biology. this year we publish a basic science manuscript PubMed 21220345. |
Start Year | 2006 |
Description | AR : Analysis of inositol phosphates signaling in neuronal cells. |
Organisation | Medical Research Council (MRC) |
Department | MRC Laboratory of Molecular Biology (LMB) |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We provided the technical and theoretical expertise to analyze inositol phosphates. |
Collaborator Contribution | They have allowed me to study signaling by inositol phosphates in neuronal cell. Neurons are an excellent experimental system to study signaling mechanism that due to technical difficulty is to often misuse or not use. Thanks to this collaboration I now using neuronal cell as experimental model. |
Impact | This has been a very productive collaboration that generated high profile publication (Nature Neuroscience) PubMed 20118926 and (Molecular Biology of the Cell) PMID:23864704 |
Start Year | 2006 |
Description | CL : Inositides distribution and quantification using Multi-isotope Imaging Mass Spectrometry. |
Organisation | Harvard University |
Department | Harvard Medical School |
Country | United States |
Sector | Academic/University |
PI Contribution | To this project I supply reagents, yeast strains and inositol signaling expertise. |
Collaborator Contribution | This partnership opens the unique possibility to direct analyze-imagining inositol inside cells. Claude with his expertise and technology will allow unique investigation. |
Impact | This collaboration has allowed me to win a very prestigious HFSP grant thus enhancing (economically and scientifically) the profile of the lab. At the moment the only outputs this collaboration generated is extra money and higher scientific profile for the lab. We generate one publication as reported in my papers output |
Start Year | 2009 |
Description | Developing inositol phosphate chemical tools |
Organisation | University of Zurich |
Country | Switzerland |
Sector | Academic/University |
PI Contribution | Developing inositol phosphate chemical tools |
Collaborator Contribution | organic synthesis |
Impact | One publication Pavlovic I, Thakor DT, Bigler L, Wilson MS, Laha D, Schaaf G, Saiardi A, Jessen HJ. Prometabolites of 5-Diphospho-myo-inositol Pentakisphosphate. Angew Chem Int Ed Engl. 2015 Aug 10;54(33):9622-6. PMID: 26014370. |
Start Year | 2013 |
Description | Inositol phosphate and phosphate homeostasis in Dictyostelium discoideum |
Organisation | University College London |
Department | MRC Laboratory for Molecular Cell Biology |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | We developed Dictyostelium discoideum as a model to study inositol phosphate metabolism and the inorganic polyphosphate (polyP) role in biology. Our experience in inositol polyphosphate and polyP analysis have rapidly facilitated the development of this model thanks to the help of our collaborator. We are now using amoeba to understand the role of the cited molecules to control cellular phosphate homeostasis. |
Collaborator Contribution | He transferred his know-how on Amoeba biology to my laboratory personnel, furthermore, he has given us tools and reagents essential to initiate to perform Dictyostelium discoideum research. |
Impact | This collaboration generated two scientific publications: 1: Livermore TM, Chubb JR, Saiardi A. Developmental accumulation of inorganic polyphosphate affects germination and energetic metabolism in Dictyostelium discoideum. Proc Natl Acad Sci U S A. 2016 Jan 26;113(4):996-1001. 2: Pisani F, Livermore T, Rose G, Chubb JR, Gaspari M, Saiardi A. Analysis of Dictyostelium discoideum inositol pyrophosphate metabolism by gel electrophoresis. PLoS One. 2014 Jan 9;9(1):e85533. More importantly a postdoc of the laboratory proposing a project based on this collaboration was awarded a Marie Curie Fellowship (EU project 752903 - PHEMDD - GAP-752903) |
Start Year | 2013 |
Description | Inositol pyrophosphate signaling in the yeast S. pombe |
Organisation | Heinrich Heine University Düsseldorf |
Country | Germany |
Sector | Academic/University |
PI Contribution | Transfer of my inositol pyrophosphate and inorganic polyphosphate (polyP) theoretical and practical know-how. Biochemical analysis of Schizosaccharomyces pombe inositol kinases mutant strains. |
Collaborator Contribution | Initiated the project identifying by genetic studies key roles for inositol phosphate kinases of Schizosaccharomyces pombe, Is providing stains, expertise, tools and genetic analyses. |
Impact | This collaboration is just started, thus there are not output to be listed. However, a important publication has been just been accepted (Mol Cell Biol. 2018 Feb 12. pii: MCB.00047-18. doi: 10.1128/MCB.00047-18.) in wich we describe the importance of the phosphatase domain of PP-IP5K to regulate the level of inositol pyrophosphates. This collaboration is multidisciplinary, involving a yeast geneticist and a biochemist. |
Start Year | 2017 |
Description | Roles of Inositol Phosphates in Viral Biology |
Organisation | Medical Research Council (MRC) |
Department | MRC Laboratory of Molecular Biology (LMB) |
Country | United Kingdom |
Sector | Academic/University |
PI Contribution | Our inositol phosphate analysis technologies allow us to analyse the inositol phosphate levels in HIV virion. We are also theoretically contributing to this collaborative project by transferring our unique inositol metabolic pathways know-own. |
Collaborator Contribution | The partner is a HIV structural biologist and bring in this collaboration the HIV biology expertise |
Impact | This collaboration is multidisciplinary, involving a structural biologist/ immunologist and a biochemist. This collaboration generated a published paper and a second manuscript just submitted. IP6 is an HIV pocket factor that prevents capsid collapse and promotes DNA synthesis. Mallery DL, et al. Elife. 2018 May 31;7. pii: e35335. |
Start Year | 2017 |
Description | Studying inositol phosphate signalling in Cryptococcus neoformans |
Organisation | University of Sydney |
Country | Australia |
Sector | Academic/University |
PI Contribution | I will analyse the inositol polyphosphate signal of Cryptococcus neoformans mutant generated in Dr. Julienne Djordjevic laboratory |
Collaborator Contribution | Dr J. Djordjevic is currently generating and characterising Cryptococcus neoformans mutant strains defective in inositol phosphate kinases |
Impact | This collaboration has been awarded a NHMRC research grant and I was CO-PI of Dr J. Djordjevic application. |
Start Year | 2013 |
Description | Studying inositol phosphate signalling in Trypanosome |
Organisation | University of Georgia |
Country | United States |
Sector | Academic/University |
PI Contribution | We analyse the biochemistry of Trypanosome mutant in the enzymes responsible for inositol pyrophosphate synthesis |
Collaborator Contribution | Generate the mutants and study the in vivo phenotype of altered inositides signalling |
Impact | We are co-organising a 2015 meeting sponsored by the Biochemical Society |
Start Year | 2013 |
Description | plant inositol pyrophosphate |
Organisation | Eberhard Karls University of Tübingen |
Country | Germany |
Sector | Academic/University |
PI Contribution | analysis of inositol phosphate levels excenge of reagent and tecnologies |
Collaborator Contribution | developing the research line and generating plant mutant lines |
Impact | One publication VIH2 Regulates the Synthesis of Inositol Pyrophosphate InsP8 and Jasmonate-Dependent Defenses in Arabidopsis. Laha D, Johnen P, Azevedo C, Dynowski M, Weiß M, Capolicchio S, Mao H, Iven T, Steenbergen M, Freyer M, Gaugler P, de Campos MK, Zheng N, Feussner I, Jessen HJ, Van Wees SC, Saiardi A, Schaaf G. Plant Cell. 2015 Apr;27(4):1082-97. |
Start Year | 2013 |
Description | 2013 MRC Open Day |
Form Of Engagement Activity | Participation in an open day or visit at my research institution |
Part Of Official Scheme? | Yes |
Type Of Presentation | Workshop Facilitator |
Geographic Reach | Local |
Primary Audience | Public/other audiences |
Results and Impact | We have divulgate our science to the general public on the MRC open day (29 June 2013) about ~200 peoples (general public) maily family with cildren visited our stand It was rewording for us and instructive and fun for the audience. Likely this type of event will be yearly repeated. |
Year(s) Of Engagement Activity | 2013 |
Description | Interview for national news on immortality |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | National |
Primary Audience | Media (as a channel to the public) |
Results and Impact | The radio programme discussed life after death. Dr. Miranda Wilson (Postdoc of the laboratory) was interviewed for a section on HeLa and other cell lines being a form of immortality. |
Year(s) Of Engagement Activity | 2017 |
URL | http://www.bbc.co.uk/programmes/w3csv3f3 |
Description | TEDx theme Brain Drain (23 February 2017, Cosenza, Italy) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Public/other audiences |
Results and Impact | The different presentation focused on the Brain Drain that Italy is witnessing in recent years. I presented my experience and outline the difference approach to science and to scientist that exist in different part of the world. I also discuss the concept that "Science is not a democracy" something that the general public found difficult to accept. |
Year(s) Of Engagement Activity | 2017 |
URL | https://www.ted.com/tedx/events/19418 |
Description | UNISTEM Day (U.Calabria, Italy) |
Form Of Engagement Activity | A talk or presentation |
Part Of Official Scheme? | No |
Geographic Reach | International |
Primary Audience | Schools |
Results and Impact | Speaker to the 2014 Unistem Day, A stem cell event dedicated to high school students University of Calabria (Italy) 15 March 2014 |
Year(s) Of Engagement Activity | 2014 |
URL | http://users2.unimi.it/unistem/index.php/archive-unistemday/?lang=en |